Contacts of the helix formed by residues 809 - 846 (chain A) in PDB entry 2NVX
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 809 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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802A ASN* 4.3 9.9 - - - +
808A LEU* 1.3 75.5 - - - +
810A PRO* 1.4 70.8 - - + +
811A GLN* 4.2 8.5 + - - +
812A GLU* 2.8 45.3 + - - +
813A PHE* 2.6 38.3 + - - +
728B ARG* 4.1 14.8 - - - +
729B ILE 4.3 0.4 - - - +
730B ARG* 4.1 32.3 - - + +
731B VAL* 5.7 3.4 - - + +
1047B PHE* 3.3 4.5 - - - -
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Residues in contact with PRO 810 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809A THR* 1.4 91.9 - - + +
811A GLN* 1.3 68.5 + - - +
813A PHE* 3.3 8.0 + - - +
814A PHE 3.5 6.6 + - - -
519B TRP* 3.5 15.4 - - + -
705B MET* 3.6 39.0 - - + -
730B ARG* 4.3 16.8 - - + +
745B PRO* 4.1 12.6 - - + -
748B ILE* 4.6 0.7 - - - +
1047B PHE* 2.4 40.3 - - + -
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Residues in contact with GLN 811 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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784A LEU* 4.1 14.4 - - + -
786A HIS* 4.8 7.3 - - + +
787A PHE* 3.6 35.9 - - + -
795A GLU 5.5 0.7 - - - +
809A THR* 3.4 6.9 + - - +
810A PRO* 1.3 78.6 - - - +
812A GLU* 1.4 57.5 + - + +
814A PHE* 2.6 31.2 + - - +
815A PHE* 3.0 30.7 + - + -
519B TRP* 4.3 3.1 - - - -
705B MET* 3.5 39.3 - - - +
730B ARG* 6.0 3.0 - - - +
731B VAL* 3.9 19.9 - - - +
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Residues in contact with GLU 812 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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795A GLU* 5.8 4.6 - - + +
798A GLY 6.3 0.2 - - - -
799A PHE 3.6 8.5 - - - +
800A VAL* 3.4 40.0 - - + +
801A GLU* 3.0 27.8 + - - +
802A ASN* 3.7 10.3 + - - -
808A LEU* 3.9 4.0 - - + -
809A THR* 2.8 49.5 + - - +
811A GLN* 1.4 77.2 - - + +
813A PHE* 1.3 53.7 + - - +
815A PHE* 3.0 15.8 + - + +
816A HIS* 2.7 37.4 + - - +
729B ILE 4.7 2.4 - - - +
731B VAL* 5.8 4.7 - - - +
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Residues in contact with PHE 813 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808A LEU* 4.3 19.9 - - + +
809A THR 2.6 21.0 + - - +
810A PRO 3.5 4.9 - - - +
812A GLU* 1.3 72.8 - - - +
814A PHE* 1.3 56.1 + - - +
816A HIS* 4.5 2.9 - - - -
817A ALA* 3.0 24.6 + - + +
524B PRO* 4.7 10.1 - - + -
525B ALA* 5.3 4.0 - - + -
748B ILE* 4.4 11.0 - - + -
749B LEU* 4.1 31.6 - - + -
759B PRO* 3.9 16.6 - - + -
760B ASP* 4.6 9.9 - - + -
762B ASN 4.9 2.7 - - - -
764B SER* 3.5 22.0 - - - -
767B ASN* 3.6 29.6 - - + -
1047B PHE* 4.2 22.0 - + + -
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Residues in contact with PHE 814 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784A LEU* 4.1 15.5 - - + -
810A PRO 3.5 1.2 + - - -
811A GLN 2.6 16.3 + - - +
813A PHE* 1.3 73.4 - - - +
815A PHE* 1.3 61.6 + + - +
817A ALA* 3.1 6.4 - - - +
818A MET* 2.9 59.2 + - + +
514B LEU* 3.2 33.2 - - + -
515B HIS 3.7 13.0 - - - -
516B ASN* 4.0 17.7 - - - -
518B HIS* 4.1 3.6 - - + -
519B TRP* 3.6 57.6 - + + -
522B VAL 5.1 2.0 - - - -
524B PRO* 4.2 17.3 - - + -
748B ILE* 4.9 3.6 - - + -
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Residues in contact with PHE 815 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768A GLN* 4.5 5.3 - - + +
775A ILE* 3.7 39.3 - - + +
783A THR* 3.2 32.8 - - + -
784A LEU* 3.8 20.2 - - + -
787A PHE* 4.5 4.5 - + - -
795A GLU 4.1 14.6 - - - -
796A SER 4.0 13.2 - - - -
798A GLY* 3.9 17.3 - - - +
800A VAL* 5.4 1.8 - - + -
811A GLN* 3.0 47.9 + - + -
812A GLU* 3.1 13.5 - - + +
814A PHE* 1.3 76.0 - + - +
816A HIS* 1.4 55.6 + - - +
818A MET* 2.7 35.5 + - - +
819A GLY* 3.2 5.4 + - - -
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Residues in contact with HIS 816 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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760A GLN* 5.8 0.2 - - - -
765A VAL* 5.5 2.0 - - + -
768A GLN* 3.2 36.9 + - + +
800A VAL* 5.0 2.5 - - + -
804A TYR* 3.0 26.1 + - - -
808A LEU* 3.3 32.5 - - + -
812A GLU 2.7 18.3 + - - +
813A PHE* 3.9 5.2 - + - +
815A PHE* 1.4 72.4 - - - +
817A ALA* 1.3 56.9 + - - +
819A GLY* 3.2 2.4 + - - -
820A GLY* 3.0 26.1 + - - -
762B ASN 4.1 6.3 - - - -
763B GLN* 3.5 6.9 - - + -
764B SER* 3.0 43.9 + - - -
765B PRO* 4.9 2.2 - - + -
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Residues in contact with ALA 817 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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813A PHE* 3.0 21.2 + - + +
814A PHE* 3.1 12.1 - - - +
816A HIS* 1.3 75.7 - - - +
818A MET* 1.3 57.9 + - - +
820A GLY* 3.9 0.3 - - - -
821A ARG* 3.0 30.3 + - - +
514B LEU* 3.9 5.5 - - + +
524B PRO* 3.8 34.0 - - + +
525B ALA* 6.3 0.2 - - + -
764B SER* 3.4 14.0 + - - +
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Residues in contact with MET 818 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
770A VAL* 3.4 33.0 - - + +
775A ILE* 3.8 32.5 - - + -
776A ALA 5.3 1.6 - - - +
783A THR* 5.6 0.4 - - - -
814A PHE* 2.9 43.7 + - + +
815A PHE* 2.7 15.3 + - - +
817A ALA* 1.3 77.3 - - - +
819A GLY* 1.3 58.7 + - - +
821A ARG* 3.8 3.5 + - - +
822A GLU* 3.5 13.0 + - - +
513B GLN* 5.0 4.2 - - - +
514B LEU* 3.3 34.4 + - + +
515B HIS* 5.3 0.2 - - - -
516B ASN* 3.9 21.3 - - - +
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Residues in contact with GLY 819 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768A GLN* 4.1 16.6 - - - -
769A SER 4.2 19.0 - - - +
770A VAL* 4.2 2.0 - - - +
775A ILE* 5.7 0.2 - - - +
815A PHE 3.2 7.6 + - - -
816A HIS 3.2 3.3 + - - -
818A MET* 1.3 76.6 - - - +
820A GLY* 1.3 64.9 + - - +
821A ARG 3.1 1.3 - - - -
822A GLU* 2.9 17.2 + - - +
823A GLY* 3.2 9.0 + - - -
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Residues in contact with GLY 820 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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768A GLN* 4.6 2.0 - - - +
816A HIS* 3.0 16.9 + - - -
817A ALA 4.0 1.6 - - - -
819A GLY* 1.3 74.1 - - - +
821A ARG* 1.3 61.8 - - - +
823A GLY* 3.2 11.7 + - - -
824A LEU* 3.2 20.8 + - - +
764B SER* 4.3 3.1 - - - -
765B PRO* 3.8 30.2 - - - +
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Residues in contact with ARG 821 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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817A ALA 3.0 18.7 + - - +
818A MET 3.9 5.6 - - - +
819A GLY 3.1 0.4 - - - -
820A GLY* 1.3 76.4 - - - +
822A GLU* 1.3 58.5 + - - +
824A LEU* 3.2 16.2 + - - +
825A ILE* 2.9 42.7 + - + +
512B ARG 3.5 22.3 + - - +
513B GLN* 4.5 1.1 - - - -
514B LEU* 3.0 48.7 - - + +
522B VAL* 5.3 0.6 - - - +
523B CYS 4.6 3.2 + - - -
524B PRO 2.9 28.1 + - - +
526B GLU 5.6 0.6 + - - -
527B THR* 4.1 25.1 - - - +
533B CYS* 5.0 1.6 - - - -
534B GLY* 3.6 26.6 + - - -
537B LYS* 3.9 18.6 - - - +
768B THR* 6.0 0.4 - - - -
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Residues in contact with GLU 822 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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769A SER 4.9 3.3 - - - +
770A VAL* 3.2 23.0 - - + +
771A GLU* 3.0 39.1 + - - +
772A GLY 5.0 0.2 + - - -
818A MET 3.5 9.0 + - - +
819A GLY 2.9 10.3 + - - +
821A ARG* 1.3 78.2 - - - +
823A GLY* 1.3 53.7 + - - +
825A ILE* 3.1 1.9 + - - +
826A ASP* 2.8 50.7 + - + +
513B GLN* 3.3 32.2 + - + +
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Residues in contact with GLY 823 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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819A GLY 3.2 5.7 + - - -
820A GLY* 3.2 7.9 + - - -
821A ARG 3.2 0.6 - - - -
822A GLU* 1.3 75.5 - - - +
824A LEU* 1.3 65.0 + - - +
826A ASP* 2.9 24.4 - - - +
827A THR* 3.1 16.2 + - - -
1080A THR* 5.6 5.2 - - - -
1081A LEU 6.0 3.8 - - - -
765B PRO* 6.1 1.1 - - - -
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Residues in contact with LEU 824 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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820A GLY 3.2 15.5 + - - +
821A ARG* 3.5 19.3 - - - +
823A GLY* 1.3 75.0 - - - +
825A ILE* 1.3 63.0 + - - +
827A THR* 3.7 6.4 + - - +
828A ALA* 3.3 23.4 + - - +
527B THR* 5.6 0.2 - - + -
529B GLU* 3.7 20.6 - - + +
533B CYS* 4.2 18.3 - - - -
765B PRO* 4.3 18.8 - - + +
768B THR* 3.9 35.2 - - + +
769B TYR* 3.5 31.2 - - + +
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Residues in contact with ILE 825 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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821A ARG* 2.9 40.4 + - + +
822A GLU* 3.1 9.2 + - - +
824A LEU* 1.3 80.3 - - - +
826A ASP* 1.3 65.5 + - + +
828A ALA* 3.4 4.4 + - - +
829A VAL* 3.4 25.1 + - + +
512B ARG* 3.7 35.3 + - + +
513B GLN* 4.0 19.5 - - - +
533B CYS* 3.5 45.8 - - + +
534B GLY 4.4 0.7 - - - +
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Residues in contact with ASP 826 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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822A GLU* 2.8 37.5 + - + +
823A GLY* 2.9 12.6 - - - +
825A ILE* 1.3 73.9 - - + +
827A THR* 1.3 72.3 + - - +
829A VAL* 2.9 9.1 + - + +
830A LYS* 2.4 74.7 + - + +
1080A THR* 4.3 1.4 - - - +
1081A LEU* 5.0 8.3 - - - +
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Residues in contact with THR 827 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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823A GLY 3.1 15.8 + - - -
824A LEU* 3.7 7.6 - - - +
826A ASP* 1.3 81.1 + - - +
828A ALA* 1.3 59.9 + - + +
829A VAL 3.0 9.0 + - - -
830A LYS* 3.8 8.0 - - - +
831A THR* 3.2 31.9 + - - +
1080A THR* 4.0 18.2 + - - +
529B GLU* 4.7 12.8 - - + +
1308B DUT 6.0 2.0 - - - +
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Residues in contact with ALA 828 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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824A LEU 3.3 14.7 + - - +
825A ILE 3.8 4.9 - - - +
826A ASP 3.4 0.2 - - - -
827A THR* 1.3 79.2 - - + +
829A VAL* 1.3 63.2 + - + +
831A THR* 5.6 1.3 - - - -
832A ALA* 3.8 14.5 - - - +
512B ARG* 5.7 3.1 - - - +
529B GLU* 5.5 1.8 - - + -
530B GLY* 3.6 36.6 - - - +
533B CYS* 5.0 3.6 - - + -
18T A 5.3 13.1 - - - +
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Residues in contact with VAL 829 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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825A ILE* 3.4 20.8 + - + +
826A ASP* 2.9 10.6 + - + +
828A ALA* 1.3 82.1 - - + +
830A LYS* 1.3 62.0 + - + +
831A THR 3.6 0.4 - - - -
832A ALA* 3.6 8.2 - - + +
833A GLU* 3.0 43.7 + - + +
512B ARG* 5.2 14.8 - - - +
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Residues in contact with LYS 830 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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826A ASP* 2.4 60.3 + - + +
827A THR* 3.8 6.1 - - - +
829A VAL* 1.3 65.8 - - - +
831A THR* 1.3 54.2 + - - +
832A ALA 2.9 1.3 - - - -
833A GLU* 2.7 12.2 + - - +
834A THR* 2.6 41.6 + - - +
1076A ALA 6.1 0.2 - - - +
1077A THR 5.7 3.6 - - - +
1079A MET 2.9 22.7 - - - +
1080A THR* 2.6 49.6 + - - +
1081A LEU* 2.9 12.0 - - - +
1098A VAL* 4.8 15.6 - - + +
1099A PRO* 6.5 0.2 - - + -
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Residues in contact with THR 831 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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448A PRO* 6.2 1.8 - - + -
827A THR* 3.2 19.2 + - - +
828A ALA* 5.6 0.9 - - - -
830A LYS* 1.3 78.0 - - - +
832A ALA* 1.3 57.4 + - - +
834A THR* 3.7 9.0 - - + -
835A GLY* 2.9 24.6 + - - +
1077A THR* 4.4 24.0 + - + +
18T A 3.2 51.9 + - + +
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Residues in contact with ALA 832 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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828A ALA 3.8 18.4 + - - +
829A VAL* 3.6 13.6 - - + +
830A LYS 2.9 0.2 - - - -
831A THR* 1.3 82.1 - - - +
833A GLU* 1.3 61.8 + - + +
836A TYR* 3.5 17.3 + - - +
17T G 4.0 10.5 - - + +
18T A 3.5 35.5 - - + +
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Residues in contact with GLU 833 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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829A VAL* 3.0 32.2 + - + +
830A LYS* 2.7 11.6 + - - +
832A ALA* 1.3 74.2 - - + +
834A THR* 1.3 55.8 + - - +
836A TYR* 3.4 8.3 + - + +
837A ILE* 3.1 31.9 + - - +
1098A VAL* 4.4 19.0 - - + +
1099A PRO* 5.0 7.3 - - - +
1102A LYS* 3.8 37.7 - - + +
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Residues in contact with THR 834 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450A LEU* 5.7 0.7 - - + -
830A LYS* 2.6 24.9 + - - +
831A THR* 3.8 9.1 - - + -
833A GLU* 1.3 67.7 - - - +
835A GLY* 1.3 59.2 + - - +
836A TYR 3.0 4.3 - - - -
837A ILE* 3.0 8.8 + - - +
838A GLN* 2.7 30.4 + - + +
1073A GLY* 3.9 8.7 - - - +
1076A ALA* 3.6 21.3 + - + +
1077A THR* 3.2 40.8 - - + +
1098A VAL* 4.2 11.7 - - - +
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Residues in contact with GLY 835 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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450A LEU* 6.4 0.7 - - - -
831A THR* 2.9 21.2 + - - +
832A ALA 3.6 0.2 + - - -
834A THR* 1.3 75.0 - - - +
836A TYR* 1.3 55.2 + - - +
838A GLN* 4.1 9.0 - - - -
839A ARG* 3.4 26.7 + - - +
1133B MET* 5.1 10.3 - - - +
18T A 3.8 27.4 - - - +
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Residues in contact with TYR 836 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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832A ALA 3.5 10.8 + - - +
833A GLU* 3.4 12.3 + - + +
834A THR 3.0 0.6 - - - -
835A GLY* 1.3 78.4 - - - +
837A ILE* 1.3 66.8 + - + +
839A ARG* 4.4 14.5 - - - +
840A ARG* 2.9 66.6 + - + +
1102A LYS* 5.7 10.5 - - + -
1385A THR* 5.2 5.6 - - + +
1386A ARG* 5.6 0.9 + - - -
1403A GLU* 3.1 36.7 + - - -
16T C 4.1 21.5 + - - -
17T G 4.4 32.5 - - + +
18T A 4.9 0.9 - - - -
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Residues in contact with ILE 837 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833A GLU* 3.1 18.5 + - + +
834A THR* 3.0 10.5 + - - +
836A TYR* 1.3 74.9 - - + +
838A GLN* 1.3 58.3 + - - +
840A ARG* 2.7 50.3 + - - +
841A LEU* 2.9 34.7 + - + +
1073A GLY* 5.2 1.8 - - - -
1076A ALA* 4.9 9.2 - - + -
1098A VAL* 4.6 12.8 - - + -
1101A LEU* 4.2 16.2 - - + +
1102A LYS* 4.6 25.6 - - + -
1105A LEU* 4.1 22.7 - - + -
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Residues in contact with GLN 838 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A SER 4.7 2.8 + - - -
450A LEU* 3.4 39.9 - - + +
834A THR* 2.7 19.8 + - + +
835A GLY* 4.3 7.6 - - - -
837A ILE* 1.3 74.7 - - - +
839A ARG* 1.3 59.7 + - - +
841A LEU* 3.4 6.2 + - - +
842A VAL* 2.9 52.7 + - - +
1069A ALA 5.3 1.6 - - - +
1070A GLN* 4.2 23.2 + - - +
1073A GLY* 3.9 27.3 - - - +
1074A GLU 5.6 0.2 - - - +
1133B MET* 4.2 18.1 - - + +
1136B ASP* 5.5 1.0 - - - +
----------------------------------------------------------
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Residues in contact with ARG 839 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A LYS* 5.5 4.2 - - - +
337A ARG* 2.8 40.4 - - - +
835A GLY 3.4 20.1 + - - +
836A TYR* 4.4 15.8 - - + +
837A ILE 3.0 1.0 + - - -
838A GLN* 1.3 83.1 + - - +
840A ARG* 1.3 58.8 + - + +
842A VAL* 3.5 4.9 + - + +
843A LYS* 3.0 34.9 + - + +
1402A PHE* 5.3 2.2 - - + -
1403A GLU* 5.9 0.6 + - - -
1132B GLU* 4.4 12.7 + - - +
1133B MET* 5.9 5.8 - - + -
1136B ASP* 6.1 1.1 - - - +
17T G 2.6 51.2 + - - -
18T A 4.0 6.6 + - - -
19T T 2.8 29.9 + - - -
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Residues in contact with ARG 840 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
836A TYR* 2.9 77.6 + - + +
837A ILE* 2.7 32.4 + - - +
839A ARG* 1.3 72.2 - - + +
841A LEU* 1.3 66.8 + - + +
843A LYS* 2.9 4.0 + - - +
844A ALA* 2.7 24.1 + - - +
1105A LEU* 3.5 13.1 + - - +
1106A ASN* 3.2 29.7 - - - +
1384A VAL* 2.7 32.2 + - + +
1385A THR* 3.3 18.9 - - - +
1389A PHE* 4.0 1.7 - - + -
1402A PHE* 3.5 27.4 - - + -
1403A GLU* 3.7 2.9 - - - +
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Residues in contact with LEU 841 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
837A ILE* 2.9 33.2 + - + +
838A GLN* 3.6 7.4 - - - +
840A ARG* 1.3 78.2 - - + +
842A VAL* 1.3 63.5 + - - +
844A ALA* 2.9 9.7 + - - +
845A LEU* 3.1 19.4 + - + +
1069A ALA* 3.8 19.5 - - + +
1072A ILE* 4.2 29.8 - - + -
1073A GLY* 4.5 8.3 - - - +
1105A LEU* 3.6 35.2 - - + -
1371A LEU* 3.9 18.2 - - + -
1384A VAL* 3.8 15.0 - - + -
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Residues in contact with VAL 842 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
838A GLN* 2.9 44.9 + - - +
839A ARG* 3.8 6.5 - - + +
840A ARG 3.2 0.2 - - - -
841A LEU* 1.3 75.3 - - - +
843A LYS* 1.3 62.2 + - + +
846A GLU* 3.1 32.1 + - + +
1066A VAL* 4.7 12.0 - - + +
1069A ALA* 3.7 20.2 - - + +
1070A GLN* 4.9 8.3 - - + -
1135B ARG* 5.4 1.8 - - - +
1136B ASP* 3.0 40.4 - - + +
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Residues in contact with LYS 843 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337A ARG* 5.4 0.4 - - - +
341A MET* 3.4 17.1 - - - +
839A ARG* 3.0 22.7 + - + +
840A ARG 2.9 4.5 + - - +
842A VAL* 1.3 81.1 - - + +
844A ALA* 1.3 61.7 + - - +
846A GLU* 3.2 27.1 + - - +
1389A PHE* 3.7 10.9 - - + -
1398A MET* 4.0 6.5 + - + +
1401A SER* 3.1 35.9 + - - +
1402A PHE* 3.8 29.8 - - + -
1425A SER* 2.6 30.3 + - - -
1132B GLU* 3.6 11.4 - - - +
1135B ARG* 3.9 6.5 - - - +
1136B ASP* 6.0 0.4 - - - +
----------------------------------------------------------
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Residues in contact with ALA 844 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
840A ARG 2.7 14.6 + - - +
841A LEU* 2.9 4.5 + - - +
843A LYS* 1.3 79.8 - - - +
845A LEU* 1.3 71.9 + - + +
847A ASP* 5.1 2.0 - - - +
848A ILE* 5.3 1.0 - - - +
1374A VAL* 4.1 14.5 - - + +
1384A VAL* 3.6 24.5 - - + -
1389A PHE* 3.7 28.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU 845 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
841A LEU* 3.1 11.6 + - + +
842A VAL 4.7 0.2 - - - +
844A ALA* 1.3 87.9 - - + +
846A GLU* 1.3 73.1 + - - +
847A ASP* 2.6 8.4 + - - +
848A ILE* 2.8 25.1 + - + +
1065A GLY* 3.3 28.9 - - - +
1068A ALA* 4.1 10.3 - - + -
1069A ALA* 3.6 26.7 - - + +
1072A ILE* 5.6 0.2 - - + -
1370A LEU* 5.0 2.0 - - + -
1371A LEU* 3.9 35.9 - - + +
1374A VAL* 3.7 29.2 - - + -
----------------------------------------------------------
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Residues in contact with GLU 846 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
842A VAL* 3.1 19.9 + - + +
843A LYS* 3.2 42.6 + - - +
845A LEU* 1.3 73.9 - - - +
847A ASP* 1.3 58.4 + - - +
848A ILE 2.5 13.7 + - - -
1063A MET* 3.4 15.3 - - - +
1065A GLY* 3.3 17.4 - - - -
1066A VAL* 3.9 14.6 + - + +
1398A MET* 4.0 14.0 - - - +
1424A VAL* 3.2 30.5 - - + +
1425A SER* 2.7 25.8 + - - -
1135B ARG* 4.1 7.9 + - - +
1136B ASP* 5.8 0.4 - - - +
1139B ILE* 5.4 1.6 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il