Contacts of the helix formed by residues 591 - 605 (chain C) in PDB entry 2O2C
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 591 (chain C).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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75B PHE* 3.8 17.2 - - + -
105B LYS* 4.1 0.2 - - - -
485B GLU* 3.9 11.8 + - - +
488B MET* 3.3 31.9 - - + +
489B ILE* 4.7 4.0 - - + +
590C HIS* 1.3 79.5 - - - +
592C SER* 1.3 59.1 + - - +
593C SER* 3.0 18.9 + - - -
594C THR* 2.8 39.8 + - - -
595C ASN* 2.9 25.7 + - - -
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Residues in contact with SER 592 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B PHE* 3.4 15.9 - - - -
78B ASP 4.6 1.6 + - - -
79B SER* 3.8 21.0 + - - -
80B GLU 5.0 0.4 - - - -
81B ARG* 3.8 4.7 + - - +
82B GLY* 2.9 33.5 + - - -
83B GLN* 5.6 1.1 - - - -
590C HIS 4.0 0.2 + - - -
591C ASP* 1.3 72.3 - - - +
593C SER* 1.3 56.8 + - - +
595C ASN* 3.9 10.5 - - - +
596C GLY* 3.1 23.2 + - - -
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Residues in contact with SER 593 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75B PHE* 3.7 8.9 - - - -
82B GLY* 4.2 5.8 - - - -
102B ASP* 2.7 24.3 + - - +
104B SER* 3.1 23.4 + - - -
105B LYS* 2.8 26.1 + - - +
591C ASP* 3.0 11.0 + - - -
592C SER* 1.3 76.8 + - - +
594C THR* 1.3 61.7 + - - +
596C GLY* 3.2 2.8 + - - -
597C LEU* 3.0 32.2 + - - +
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Residues in contact with THR 594 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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105B LYS* 3.7 13.7 + - - -
481B PHE* 4.4 12.0 + - + +
485B GLU* 3.7 20.6 - - - +
577C ILE* 4.2 6.3 - - + -
590C HIS* 3.8 20.0 - - + +
591C ASP* 2.8 29.0 + - - -
593C SER* 1.3 75.0 - - - +
595C ASN* 1.3 62.0 + - - +
597C LEU* 3.4 8.7 + - - +
598C ILE* 3.0 51.2 + - + +
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Residues in contact with ASN 595 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
587C VAL* 3.5 19.6 - - - +
588C ASN* 3.4 25.9 + - - +
590C HIS* 2.9 49.2 + - - +
591C ASP 2.9 17.4 + - - +
592C SER* 3.9 8.9 - - - +
594C THR* 1.3 76.0 - - - +
596C GLY* 1.3 56.7 + - - +
598C ILE* 3.3 1.0 + - - +
599C ASN* 2.9 38.7 + - - +
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Residues in contact with GLY 596 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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82B GLY 6.5 0.2 - - - -
100B PHE* 5.6 3.4 - - - -
592C SER 3.1 13.9 + - - -
593C SER 3.2 3.6 + - - -
595C ASN* 1.3 77.9 - - - +
597C LEU* 1.3 57.4 + - - +
599C ASN* 3.5 8.5 + - - +
600C MET* 3.0 34.5 + - - +
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Residues in contact with LEU 597 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100B PHE* 3.7 27.6 - - + -
102B ASP* 3.8 15.5 - - - +
105B LYS* 3.9 12.6 - - - +
481B PHE* 3.7 26.3 - - + -
484B THR* 5.0 2.5 - - - +
528B THR* 3.7 35.9 - - + +
530B LEU* 4.0 17.3 - - + +
593C SER* 3.0 27.8 + - - +
594C THR* 3.8 5.4 - - - +
596C GLY* 1.3 75.0 - - - +
598C ILE* 1.3 59.0 + - - +
600C MET* 3.5 5.0 + - - +
601C PHE* 3.1 27.7 + - - +
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Residues in contact with ILE 598 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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481B PHE* 4.1 24.0 - - + -
577C ILE* 3.9 21.8 - - + -
580C GLN* 4.2 6.5 - - + +
581C LEU* 3.9 12.1 - - + -
587C VAL* 4.1 20.6 - - + -
590C HIS* 3.9 20.6 - - + +
594C THR* 3.0 38.1 + - + +
595C ASN 3.8 2.9 - - - +
597C LEU* 1.3 74.9 - - - +
599C ASN* 1.3 58.0 + - - +
601C PHE* 3.3 7.1 + - - +
602C ASN* 3.0 45.6 + - - +
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Residues in contact with ASN 599 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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585C MET 4.1 4.6 - - - +
586C ARG* 3.3 41.9 + - - +
587C VAL* 2.8 42.7 + - - +
595C ASN* 2.9 28.0 + - - +
596C GLY* 3.7 8.5 - - - +
597C LEU 3.3 0.2 - - - -
598C ILE* 1.3 77.3 - - - +
600C MET* 1.3 56.0 + - - +
602C ASN* 3.5 2.6 + - - +
603C GLU* 3.1 27.4 + - - +
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Residues in contact with MET 600 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88B LYS* 4.4 15.7 - - + +
98B PHE* 3.7 31.4 - - + -
100B PHE* 3.7 48.5 - - + -
463B ILE* 3.8 17.1 - - + +
530B LEU* 3.9 9.2 - - + -
596C GLY 3.0 18.3 + - - +
597C LEU* 3.8 5.6 - - - +
598C ILE 3.3 0.2 - - - -
599C ASN* 1.3 72.8 - - - +
601C PHE* 1.3 65.8 + - - +
603C GLU* 3.4 22.7 + - - +
604C LEU* 3.4 14.0 + - + +
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Residues in contact with PHE 601 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463B ILE* 3.4 49.3 - - + +
473B HIS* 4.1 7.6 - - - -
474B LYS* 4.6 11.7 - - + -
477B MET* 3.7 33.9 - - + -
481B PHE* 3.7 22.0 - + + -
530B LEU* 4.9 0.4 - - + +
581C LEU* 3.9 30.3 - - + -
597C LEU 3.1 15.0 + - - +
598C ILE 3.3 8.0 + - - +
600C MET* 1.3 77.2 - - - +
602C ASN* 1.3 70.2 + - - +
603C GLU 3.3 0.3 + - - -
604C LEU 3.3 1.0 + - - -
605C SER* 2.9 48.5 + - - -
606C HIS* 6.1 1.6 - + - -
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Residues in contact with ASN 602 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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580C GLN 3.0 22.0 + - - -
581C LEU* 3.4 9.4 - - - +
582C ARG 3.2 30.1 + - - +
583C PRO* 3.6 5.7 - - - +
584C GLY* 2.8 23.0 + - - -
585C MET* 3.0 32.7 + - - +
587C VAL* 4.9 0.2 - - - +
598C ILE* 3.0 29.3 + - - +
599C ASN 3.9 2.5 - - - +
600C MET 3.4 0.4 - - - -
601C PHE* 1.3 83.9 - - - +
603C GLU* 1.3 63.4 + - - +
604C LEU 3.6 0.2 + - - -
605C SER* 3.8 8.9 + - - -
606C HIS 5.5 0.2 + - - -
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Residues in contact with GLU 603 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88B LYS* 5.5 6.3 + - - -
584C GLY* 4.9 5.2 - - - +
586C ARG* 3.2 23.8 + - - +
599C ASN 3.1 14.9 + - - +
600C MET* 3.5 17.8 - - - +
601C PHE 3.2 0.6 - - - -
602C ASN* 1.3 78.6 - - - +
604C LEU* 1.3 76.8 + - + +
605C SER 3.8 0.2 - - - -
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Residues in contact with LEU 604 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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88B LYS* 5.1 3.4 - - - +
96B GLU* 5.9 2.5 - - - +
98B PHE* 3.5 38.1 - - + -
463B ILE* 3.7 18.8 - - + -
464B GLN* 2.9 27.9 + - - +
532B LYS* 4.4 25.1 - - + +
600C MET* 3.4 11.4 + - + +
601C PHE 3.3 3.7 + - - -
603C GLU* 1.3 102.5 - - + +
605C SER* 1.3 58.2 + - - +
606C HIS* 3.5 5.3 + - - -
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Residues in contact with SER 605 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463B ILE* 3.8 12.2 - - - +
464B GLN* 4.0 13.5 + - - +
582C ARG 5.0 0.2 - - - -
583C PRO* 4.0 10.9 - - - +
601C PHE* 2.9 41.6 + - - -
602C ASN* 3.8 13.0 + - - -
603C GLU 3.8 1.2 - - - -
604C LEU* 1.3 78.0 - - - +
606C HIS* 1.3 85.3 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il