Contacts of the helix formed by residues 588 - 615 (chain A) in PDB entry 2O8B


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with TYR 588 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    407A  LEU*     6.2     0.7    -      -       +      -
    446A  ASP      3.2    26.6    +      -       -      -
    447A  PHE*     3.7    24.6    -      +       +      -
    449A  LYS*     3.4    30.8    -      -       -      +
    450A  PHE*     3.6    28.2    +      +       +      -
    584A  ILE*     3.4    35.9    -      -       +      -
    585A  SER*     3.1    18.4    +      -       -      +
    587A  GLY*     1.3    81.6    -      -       -      +
    589A  VAL*     1.3    58.9    +      -       -      +
    591A  PRO*     3.3    24.3    -      -       +      +
    592A  MET*     2.8    22.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 589 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    171A  ARG*     5.6     5.4    -      -       -      +
    288A  GLN*     5.5     7.0    -      -       -      +
    391A  ALA*     4.3    20.6    -      -       +      +
    394A  PHE*     4.3    15.5    -      -       +      -
    395A  GLN*     4.8    21.1    -      -       +      +
    585A  SER      5.0     0.2    -      -       -      +
    586A  SER*     3.1    31.4    -      -       -      +
    587A  GLY      3.3     3.6    +      -       -      -
    588A  TYR*     1.3    74.9    -      -       -      +
    590A  GLU*     1.3    69.8    +      -       +      +
    592A  MET*     3.1    24.6    +      -       +      +
    593A  GLN*     3.6    15.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 590 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    171A  ARG*     5.4     9.9    -      -       -      +
    587A  GLY      5.2     0.4    +      -       -      -
    589A  VAL*     1.3    81.3    -      -       +      +
    591A  PRO*     1.4    68.5    -      -       +      +
    592A  MET      3.2     1.4    +      -       -      -
    593A  GLN*     3.4    14.4    +      -       -      +
    594A  THR*     3.4    20.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 591 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    443A  LEU*     4.3    10.6    -      -       +      +
    446A  ASP*     4.9     8.7    -      -       +      +
    447A  PHE*     3.5    26.7    -      -       +      -
    587A  GLY      5.0     2.2    -      -       -      +
    588A  TYR*     3.3    33.9    -      -       +      +
    590A  GLU*     1.4    92.4    -      -       +      +
    592A  MET*     1.3    61.1    +      -       -      -
    594A  THR*     3.2    22.2    +      -       +      +
    595A  LEU*     3.2    16.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 592 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    387A  LEU*     3.6    21.6    -      -       +      +
    390A  LEU*     3.7    31.6    -      -       +      -
    391A  ALA*     4.1    18.4    -      -       +      +
    394A  PHE*     4.8     6.1    -      -       +      -
    407A  LEU*     3.7    42.2    -      -       +      -
    447A  PHE*     4.3    11.0    -      -       -      -
    585A  SER      5.3     3.6    -      -       -      +
    588A  TYR*     2.8    27.7    +      -       -      +
    589A  VAL*     3.1    18.3    +      -       +      +
    591A  PRO*     1.3    77.0    -      -       -      +
    593A  GLN*     1.3    58.5    +      -       -      +
    595A  LEU*     3.3     6.1    +      -       -      +
    596A  ASN*     2.8    27.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 593 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    169A  ILE      4.7     6.7    +      -       -      -
    170A  GLN*     5.3     4.0    -      -       -      +
    171A  ARG*     2.8    58.3    +      -       -      +
    388A  ASN*     3.5    20.5    +      -       -      +
    391A  ALA*     4.2    19.9    -      -       +      +
    392A  LYS*     6.0     3.0    -      -       -      +
    589A  VAL*     3.6    13.0    +      -       -      +
    590A  GLU*     3.4     9.1    +      -       -      +
    592A  MET*     1.3    78.2    -      -       -      +
    594A  THR*     1.3    60.8    +      -       +      +
    596A  ASN*     3.4     8.5    -      -       -      +
    597A  ASP*     2.9    40.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 594 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    443A  LEU*     3.6    18.3    -      -       -      +
    590A  GLU*     3.4    16.7    +      -       +      +
    591A  PRO*     3.2    17.8    +      -       +      +
    593A  GLN*     1.3    75.6    -      -       +      +
    595A  LEU*     1.3    63.3    +      -       -      +
    597A  ASP*     3.5     6.0    +      -       -      +
    598A  VAL*     3.1    35.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 595 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    384A  PHE*     6.0     1.8    -      -       +      -
    387A  LEU*     3.6    20.6    -      -       +      -
    407A  LEU*     5.8     0.7    -      -       +      -
    410A  GLY      6.2     1.1    -      -       -      -
    411A  ILE*     4.8    12.3    -      -       +      -
    414A  LEU*     4.0    20.0    -      -       +      -
    440A  LEU*     3.8    28.0    -      -       +      -
    443A  LEU*     3.8    19.3    -      -       +      -
    447A  PHE*     4.1    23.3    -      -       +      -
    591A  PRO      3.2    14.6    +      -       -      +
    592A  MET*     3.6     4.3    -      -       -      +
    594A  THR*     1.3    78.9    +      -       -      +
    596A  ASN*     1.3    66.7    +      -       -      +
    598A  VAL*     4.6     0.9    -      -       -      -
    599A  LEU*     3.0    44.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 596 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    170A  GLN*     5.0     2.4    -      -       -      +
    337A  GLN*     3.0    38.1    +      -       -      +
    340A  ARG*     4.5     4.0    -      -       -      +
    386A  ASP*     3.8     0.2    -      -       -      +
    387A  LEU*     3.2    32.0    +      -       +      +
    388A  ASN*     3.3    33.9    +      -       -      +
    592A  MET      2.8    16.8    +      -       -      +
    593A  GLN*     3.4    11.9    -      -       -      +
    594A  THR      3.2     0.2    -      -       -      -
    595A  LEU*     1.3    78.4    -      -       -      +
    597A  ASP*     1.3    64.3    +      -       -      +
    600A  ALA*     3.0    32.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 597 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    170A  GLN*     3.4    28.4    +      -       -      +
    341A  LEU*     4.5     0.9    -      -       -      +
    388A  ASN*     5.1     1.0    +      -       -      +
    593A  GLN*     2.9    25.7    +      -       -      +
    594A  THR*     4.0     6.4    -      -       -      +
    596A  ASN*     1.3    87.7    +      -       -      +
    598A  VAL*     1.3    60.3    +      -       +      +
    600A  ALA*     3.7     6.5    +      -       -      +
    601A  GLN*     3.1    38.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 598 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    435A  VAL      4.9     8.7    -      -       -      +
    436A  PHE*     4.2    15.6    -      -       +      -
    439A  PRO*     4.7    17.5    -      -       +      -
    440A  LEU*     3.8    31.0    -      -       +      -
    443A  LEU*     4.9     5.2    -      -       +      -
    594A  THR*     3.1    20.5    +      -       -      +
    595A  LEU*     4.0     4.5    -      -       -      +
    597A  ASP*     1.3    73.9    -      -       +      +
    599A  LEU*     1.3    67.4    +      -       -      +
    601A  GLN*     2.9    25.3    +      -       -      +
    602A  LEU*     3.0    12.9    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 599 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    335A  THR*     5.4     3.4    -      -       +      +
    337A  GLN*     3.8    11.9    -      -       -      +
    381A  LEU*     5.0     9.7    -      -       +      +
    384A  PHE*     3.7    54.7    -      -       +      -
    387A  LEU*     3.9    13.7    -      -       +      -
    414A  LEU*     4.8     2.0    -      -       +      -
    417A  VAL*     6.0     2.2    -      -       +      -
    440A  LEU*     4.4    21.8    -      -       +      -
    595A  LEU*     3.0    42.6    +      -       +      +
    598A  VAL*     1.3    77.2    -      -       +      +
    600A  ALA*     1.3    52.8    +      -       -      +
    602A  LEU*     3.7     9.2    -      -       +      +
    603A  ASP*     2.8    35.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 600 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    335A  THR*     4.9     0.2    -      -       -      -
    337A  GLN*     3.5    32.2    -      -       +      +
    338A  GLY*     3.8    13.6    -      -       -      +
    341A  LEU*     3.5    16.5    -      -       +      +
    596A  ASN*     3.0    22.0    +      -       -      +
    597A  ASP*     3.8     7.4    -      -       -      +
    599A  LEU*     1.3    73.0    -      -       -      +
    601A  GLN*     1.3    65.6    +      -       -      +
    603A  ASP*     4.3     0.4    -      -       -      -
    604A  ALA*     3.1    24.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 601 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    341A  LEU*     3.7    16.4    -      -       +      -
    345A  TRP*     4.5    10.9    -      -       +      -
    435A  VAL*     5.2     8.5    -      -       -      +
    436A  PHE*     4.1    21.4    -      -       +      -
    597A  ASP*     3.1    25.0    +      -       -      +
    598A  VAL*     2.9    16.7    +      -       -      +
    600A  ALA*     1.3    78.4    -      -       -      +
    602A  LEU*     1.3    61.8    +      -       -      +
    604A  ALA*     3.4     3.6    +      -       -      +
    605A  VAL*     3.1    29.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 602 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    366A  PHE*     4.8     8.5    -      -       +      -
    376A  LEU*     3.8    15.3    -      -       +      -
    381A  LEU*     3.8    24.0    -      -       +      -
    417A  VAL*     5.2     4.0    -      -       +      -
    421A  LEU*     4.3    28.5    -      -       +      -
    436A  PHE*     3.6    32.9    -      -       +      -
    440A  LEU*     4.3    13.5    -      -       +      -
    598A  VAL*     3.0    10.1    +      -       +      +
    599A  LEU*     3.8    12.3    -      -       +      +
    601A  GLN*     1.3    75.6    -      -       -      +
    603A  ASP*     1.3    64.4    +      -       -      +
    605A  VAL*     3.5     4.4    +      -       -      +
    606A  VAL*     3.0    46.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 603 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    333A  CYS*     3.3    17.6    -      -       -      +
    334A  LYS*     3.4    14.0    +      -       -      +
    335A  THR*     2.6    48.4    +      -       +      +
    338A  GLY*     3.6     2.8    -      -       -      -
    381A  LEU*     3.7    27.0    -      -       +      +
    599A  LEU      2.8    21.9    +      -       -      +
    600A  ALA      3.8     4.7    -      -       -      +
    601A  GLN      3.3     0.2    -      -       -      -
    602A  LEU*     1.3    74.8    -      -       -      +
    604A  ALA*     1.3    64.2    -      -       -      +
    606A  VAL*     3.4     2.4    +      -       -      +
    607A  SER*     3.1    17.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 604 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    333A  CYS*     3.6    14.3    -      -       -      -
    338A  GLY      4.5     2.7    -      -       -      +
    341A  LEU*     4.5     5.2    -      -       +      -
    342A  VAL*     3.9    15.9    -      -       +      -
    345A  TRP*     3.7    25.4    -      -       +      -
    600A  ALA      3.1    16.0    +      -       -      +
    601A  GLN      3.6     4.5    -      -       -      +
    603A  ASP*     1.3    76.8    -      -       -      +
    605A  VAL*     1.3    64.9    +      -       -      +
    607A  SER*     2.7    22.4    +      -       -      -
    608A  PHE*     3.0    11.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 605 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    345A  TRP*     4.4    14.4    -      -       +      -
    359A  ARG*     5.0     3.1    -      -       +      +
    362A  LEU*     3.2    60.6    -      -       +      +
    363A  VAL*     4.1     8.9    -      -       +      +
    366A  PHE*     3.8    16.6    -      -       +      -
    436A  PHE*     4.7     4.9    -      -       +      -
    601A  GLN*     3.1    19.9    +      -       +      +
    602A  LEU*     3.8     5.6    -      -       -      +
    604A  ALA*     1.3    78.3    -      -       -      +
    606A  VAL*     1.3    63.8    +      -       -      +
    608A  PHE*     3.3    11.2    +      -       -      +
    609A  ALA*     3.1    21.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 606 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    366A  PHE*     3.9    31.0    -      -       +      -
    373A  ARG*     4.8    12.5    -      -       +      +
    376A  LEU*     4.2     5.4    -      -       +      -
    377A  GLN*     4.1    24.9    -      -       +      +
    381A  LEU*     3.8    20.4    -      -       +      -
    602A  LEU*     3.0    39.2    +      -       +      +
    603A  ASP      3.7     3.4    -      -       -      +
    605A  VAL*     1.3    75.6    -      -       -      +
    607A  SER*     1.3    58.0    +      -       -      +
    609A  ALA*     3.3     7.9    +      -       -      +
    610A  HIS*     2.9    25.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 607 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    330A  LEU      3.8     8.3    +      -       -      -
    332A  LYS*     3.8    15.5    -      -       -      -
    333A  CYS*     3.3    38.6    -      -       -      -
    342A  VAL*     4.2     1.4    -      -       -      +
    377A  GLN*     5.8     2.0    -      -       -      -
    603A  ASP*     3.1     9.1    +      -       -      -
    604A  ALA*     2.7    25.6    +      -       -      -
    606A  VAL*     1.3    71.6    -      -       -      +
    608A  PHE*     1.3    66.5    +      -       -      -
    610A  HIS*     3.0     6.6    +      -       -      +
    611A  VAL*     2.9    30.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 608 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    330A  LEU*     4.5    21.5    -      -       +      -
    342A  VAL*     3.7    34.5    -      -       +      -
    345A  TRP*     3.6    36.3    -      +       -      -
    363A  VAL*     4.4    19.8    -      -       +      +
    604A  ALA      3.0    28.2    +      -       -      -
    605A  VAL*     3.6     9.6    -      -       -      +
    607A  SER*     1.3    77.7    +      -       -      +
    609A  ALA*     1.3    52.5    +      -       -      +
    611A  VAL*     3.9     4.4    +      -       -      +
    612A  SER*     2.6    33.8    +      -       -      -
    691A  ILE*     3.7    26.0    -      -       +      -
    692A  GLY      4.8     1.8    -      -       -      -
    693A  CYS*     3.5    40.7    -      -       +      -
    694A  PHE*     5.5     0.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 609 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    363A  VAL*     4.0     6.7    -      -       +      +
    366A  PHE*     3.7    30.5    -      -       +      -
    367A  VAL*     4.0    18.2    -      -       +      -
    373A  ARG*     4.1     5.6    -      -       -      -
    605A  VAL      3.1    11.8    +      -       -      +
    606A  VAL      3.5     8.7    -      -       -      +
    607A  SER      3.1     0.6    -      -       -      -
    608A  PHE*     1.3    77.0    -      -       -      +
    610A  HIS*     1.3    60.3    +      -       -      +
    612A  SER*     2.8    17.2    +      -       -      -
    613A  ASN*     2.9    20.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 610 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    332A  LYS*     4.7    18.9    -      -       +      +
    373A  ARG*     3.9    21.4    +      -       -      +
    377A  GLN*     3.0    44.9    +      -       -      +
    606A  VAL*     2.9    17.8    +      -       +      +
    607A  SER*     3.0     6.3    +      -       -      +
    609A  ALA*     1.3    75.0    -      -       -      +
    611A  VAL*     1.3    71.8    +      -       +      +
    613A  ASN*     3.2    13.2    +      -       -      +
    614A  GLY*     3.4    13.0    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 611 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    329A  LEU*     3.3    42.6    -      -       +      +
    330A  LEU*     3.5    38.1    -      -       +      +
    332A  LYS*     4.3    16.6    -      -       +      -
    607A  SER      2.9    18.9    +      -       -      +
    608A  PHE*     4.2     3.6    -      -       -      +
    610A  HIS*     1.3    78.5    -      -       +      +
    612A  SER*     1.3    64.2    +      -       -      +
    613A  ASN      3.2     1.2    +      -       -      -
    614A  GLY*     3.3    11.8    +      -       -      -
    615A  ALA*     3.5    11.5    +      -       +      +
    619A  TYR*     5.0     7.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with SER 612 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    367A  VAL*     4.1     7.1    -      -       -      +
    608A  PHE      2.6    24.1    +      -       -      -
    609A  ALA*     2.8    16.5    +      -       -      -
    611A  VAL*     1.3    79.0    -      -       -      +
    613A  ASN*     1.3    58.8    +      -       -      -
    615A  ALA*     4.0     2.2    -      -       -      +
    618A  PRO*     3.3     8.8    -      -       -      +
    619A  TYR*     3.1    63.2    +      -       -      -
    693A  CYS*     5.7     0.7    -      -       -      -
    694A  PHE*     4.1    12.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 613 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    367A  VAL*     3.8    31.5    +      -       -      +
    370A  ALA*     5.5     0.4    -      -       -      +
    373A  ARG*     3.3    34.9    -      -       -      +
    609A  ALA      2.9    16.2    -      -       -      +
    610A  HIS      3.2     8.5    +      -       -      +
    612A  SER*     1.3    76.8    +      -       -      +
    614A  GLY*     1.3    58.0    +      -       -      +
    615A  ALA      3.1    16.8    +      -       -      +
    618A  PRO*     4.0    17.7    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 614 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    610A  HIS*     3.4     9.9    +      -       -      -
    611A  VAL*     3.3     9.3    +      -       -      -
    613A  ASN*     1.3    76.8    -      -       -      +
    615A  ALA*     1.3    62.6    +      -       -      +
    616A  PRO*     3.8     3.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 615 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    611A  VAL      3.5     6.6    +      -       -      +
    612A  SER      4.0     4.9    -      -       -      +
    613A  ASN      3.1     8.8    -      -       -      +
    614A  GLY*     1.3    79.0    -      -       -      +
    616A  PRO*     1.3    69.5    -      -       +      +
    617A  VAL      2.8    19.0    +      -       -      +
    618A  PRO*     3.6     2.1    -      -       -      +
    619A  TYR*     3.2    42.8    -      -       +      +
    643A  GLU*     4.5     3.8    -      -       -      +
    644A  VAL*     5.9     3.6    -      -       +      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il