Contacts of the helix formed by residues 180 - 206 (chain A) in PDB entry 2OEV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 180 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175A PRO* 4.3 15.5 - - - -
176A THR 3.7 8.6 + - - -
177A VAL* 3.6 8.1 + - - -
178A ASP 3.3 3.4 - - - -
179A ILE* 1.3 78.1 - - - +
181A PRO* 1.4 63.6 - - - +
182A ASP* 2.7 10.7 + - - +
183A THR* 2.6 44.7 + - - -
184A VAL* 3.4 4.9 + - - -
236A THR* 5.0 0.2 + - - -
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Residues in contact with PRO 181 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164A LYS* 3.5 54.0 + - + +
167A VAL* 3.6 16.6 - - + -
168A LEU* 3.8 28.9 - - + -
175A PRO* 5.0 4.0 - - + -
179A ILE 3.8 0.2 - - - -
180A SER* 1.4 85.5 - - - +
182A ASP* 1.3 56.8 + - - +
184A VAL* 5.2 0.2 - - + -
185A GLY* 3.1 24.6 + - - +
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Residues in contact with ASP 182 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180A SER* 2.7 12.7 + - - +
181A PRO* 1.3 74.5 - - - +
183A THR* 1.3 55.7 + - - +
185A GLY 4.4 0.5 - - - -
186A THR* 2.7 29.6 + - - -
230A GLN* 4.2 5.9 - - - +
234A LYS* 3.6 44.6 + - - +
236A THR* 3.8 10.7 + - - +
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Residues in contact with THR 183 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99A PHE* 4.8 12.3 - - + -
177A VAL* 2.6 22.3 + - + +
178A ASP* 3.3 32.5 - - + +
180A SER* 2.6 17.7 + - - -
182A ASP* 1.3 68.1 - - - +
184A VAL* 1.3 56.3 + - - -
186A THR* 2.8 27.0 + - - -
187A LEU* 3.1 16.9 + - + +
236A THR* 3.2 34.8 + - + +
237A LEU 5.4 1.3 - - - +
238A PRO* 6.5 0.4 - - + -
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Residues in contact with VAL 184 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125A PHE* 4.3 13.0 - - + -
160A PHE* 3.2 52.7 - - + +
163A ILE* 3.8 17.9 - - + -
164A LYS* 3.4 21.5 - - + +
178A ASP 3.6 17.3 - - - +
179A ILE* 4.5 0.4 - - - -
180A SER 3.4 8.1 + - - +
183A THR* 1.3 73.7 - - - +
185A GLY* 1.3 57.1 + - - +
186A THR 2.7 15.7 + - - -
187A LEU* 2.8 18.7 + - + +
188A SER* 2.8 14.8 + - - -
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Residues in contact with GLY 185 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A LEU* 5.0 3.7 - - - +
164A LYS* 4.4 20.0 - - - -
181A PRO 3.1 19.5 + - - -
182A ASP 4.5 0.4 - - - -
184A VAL* 1.3 80.7 - - - +
186A THR* 1.3 59.3 + - - +
188A SER* 4.1 10.1 + - - -
189A LEU* 3.7 17.2 + - - +
230A GLN* 3.8 9.0 + - - +
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Residues in contact with THR 186 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A ASP* 2.7 21.0 + - - -
183A THR 2.8 11.8 + - - -
184A VAL 2.7 4.2 + - - -
185A GLY* 1.3 74.5 - - - +
187A LEU* 1.3 57.4 + - - +
189A LEU* 3.0 17.4 + - - +
190A ILE* 3.0 22.1 + - + +
227A ALA* 3.5 28.5 - - - +
230A GLN* 3.4 31.4 + - + +
231A CYS* 3.6 17.7 - - - -
236A THR* 4.5 6.8 - - + +
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Residues in contact with LEU 187 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5A ILE* 5.2 5.6 - - + -
7A VAL* 3.6 33.4 - - + -
99A PHE* 4.4 16.8 - - + -
125A PHE* 4.2 24.0 - - + -
160A PHE* 3.8 20.6 - - + -
183A THR* 3.1 15.5 + - + +
184A VAL* 2.8 19.5 + - + +
186A THR* 1.3 66.9 - - - +
188A SER* 1.3 57.2 + - - +
189A LEU 2.9 1.3 - - - -
190A ILE* 2.6 40.5 + - + +
191A MET* 2.9 18.9 + - + +
238A PRO* 6.0 4.9 - - + -
241A VAL* 6.1 4.0 - - + -
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Residues in contact with SER 188 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A SER* 3.0 53.5 + - - +
160A PHE* 3.6 6.6 - - - -
161A LEU* 3.5 32.5 - - - +
184A VAL 2.8 18.2 + - - -
185A GLY* 4.1 7.8 + - - -
187A LEU* 1.3 72.6 - - - +
189A LEU* 1.3 61.3 + - - +
192A LEU* 3.3 6.1 + - - +
340A SER* 4.8 1.0 + - - -
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Residues in contact with LEU 189 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185A GLY 3.7 11.2 - - - +
186A THR* 3.0 14.1 + - - +
187A LEU 2.8 1.4 + - - -
188A SER* 1.3 79.8 + - - +
190A ILE* 1.3 60.6 + - - +
192A LEU* 3.7 6.9 - - + +
193A ALA* 3.0 24.4 + - - +
223A TYR* 3.6 41.0 - - + +
226A ASP* 3.6 16.8 - - + +
227A ALA* 3.5 33.2 - - + +
230A GLN* 4.2 13.0 - - - +
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Residues in contact with ILE 190 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5A ILE* 3.9 37.0 - - + -
186A THR* 3.0 28.2 + - + +
187A LEU* 2.6 32.3 + - + +
189A LEU* 1.3 70.5 - - - +
191A MET* 1.3 57.1 + - + +
193A ALA* 2.9 7.5 + - - +
194A GLN* 2.7 43.7 + - + +
224A PHE* 5.1 0.9 - - + -
227A ALA* 3.8 5.8 - - + -
231A CYS* 5.6 0.4 - - - -
241A VAL* 4.7 11.0 - - + -
245A LEU* 3.6 42.4 - - + -
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Residues in contact with MET 191 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
5A ILE* 4.4 11.0 - - + +
7A VAL* 4.0 18.6 - - + -
132A SER* 3.4 28.7 - - - -
153A TYR* 3.9 21.3 - - - +
156A ALA* 3.6 17.7 - - + -
157A SER* 3.4 24.7 - - - +
160A PHE* 3.9 21.5 - - + -
187A LEU* 2.9 17.6 + - + +
190A ILE* 1.3 75.4 - - - +
192A LEU* 1.3 54.9 + - - +
194A GLN* 2.6 44.3 + - - +
195A ALA* 2.8 12.5 + - - +
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Residues in contact with LEU 192 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A GLN* 5.5 0.4 - - - +
157A SER* 3.3 10.8 - - - +
188A SER 3.3 14.5 + - - +
189A LEU* 3.7 9.9 - - + +
190A ILE 3.3 0.2 - - - -
191A MET* 1.3 79.2 - - - +
193A ALA* 1.3 62.0 + - - +
195A ALA* 3.3 7.6 + - - +
196A GLN* 3.0 23.4 + - - +
223A TYR* 3.2 50.5 - - + +
338A VAL* 3.8 19.9 - - + +
339A LYS* 4.0 3.8 - - - +
340A SER* 3.1 40.6 - - - +
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Residues in contact with ALA 193 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A LEU 3.0 12.7 + - - +
190A ILE* 2.9 13.3 + - - +
192A LEU* 1.3 72.8 - - - +
194A GLN* 1.3 62.5 + - - +
196A GLN* 3.7 4.0 + - - +
197A GLU* 3.1 15.9 + - - +
220A ALA* 4.6 1.3 - - - +
223A TYR* 3.3 36.8 - - + +
224A PHE* 3.7 39.9 - - + +
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Residues in contact with GLN 194 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A PHE* 3.4 12.0 - - + -
5A ILE* 2.6 60.9 + - - +
153A TYR* 3.5 32.5 + - + -
190A ILE* 2.7 15.2 + - + +
191A MET* 2.6 27.3 + - - +
193A ALA* 1.3 69.4 - - - +
195A ALA* 1.3 66.7 + - - +
197A GLU* 2.9 21.3 + - - +
198A VAL* 3.5 4.0 + - - +
224A PHE* 3.9 15.9 - - + -
248A LYS* 3.2 19.5 + - - +
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Residues in contact with ALA 195 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A ALA* 4.4 4.9 - - - +
153A TYR* 3.2 29.9 - - + -
154A GLN* 4.0 15.7 - - - +
191A MET 2.8 9.9 + - - +
192A LEU* 3.4 9.6 - - - +
194A GLN* 1.3 68.8 - - - +
196A GLN* 1.3 56.2 + - - +
197A GLU 2.6 13.2 + - - -
198A VAL* 2.8 24.5 + - - +
199A PHE* 3.6 7.8 + - - -
338A VAL* 3.8 18.6 - - + -
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Residues in contact with GLN 196 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A LEU 3.0 13.8 + - - +
193A ALA 3.7 5.4 - - - +
195A ALA* 1.3 77.3 - - - +
197A GLU* 1.3 63.2 + - - +
198A VAL 3.3 0.2 - - - -
199A PHE* 3.6 8.3 + - - +
200A PHE* 3.3 14.7 + - - +
216A LEU* 2.9 34.8 + - - +
219A GLN* 4.0 7.3 - - - +
220A ALA* 3.5 24.6 - - + +
223A TYR* 4.1 10.5 - - + -
335A ALA 3.2 21.4 + - - -
337A LEU* 3.3 15.6 + - - +
338A VAL* 3.1 29.1 - - + +
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Residues in contact with GLU 197 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A PHE* 3.2 31.5 - - + -
193A ALA 3.1 12.7 + - - +
194A GLN* 2.9 14.2 + - - +
195A ALA 2.6 6.5 + - - -
196A GLN* 1.3 73.6 - - - +
198A VAL* 1.3 50.7 + - - +
200A PHE* 2.9 37.5 + - + +
201A LEU* 3.0 14.6 + - + +
220A ALA* 4.5 4.3 - - - -
224A PHE* 4.3 6.7 - - + -
248A LYS* 3.3 32.9 + - - +
252A MET* 3.2 40.9 - - + +
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Residues in contact with VAL 198 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A PHE* 5.0 6.3 - - + -
140A LEU* 4.2 20.0 - - + -
146A LEU* 3.9 38.1 - - + -
149A ALA* 4.3 13.5 - - + -
150A ALA* 4.5 17.0 - - + +
153A TYR* 4.8 6.3 - - + -
194A GLN 4.0 7.2 - - - +
195A ALA* 2.8 13.9 + - - +
197A GLU* 1.3 71.9 - - - +
199A PHE* 1.3 62.0 + - + +
200A PHE 2.9 1.3 - - - -
201A LEU* 2.3 35.8 + - + +
202A LYS* 2.7 14.8 + - + +
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Residues in contact with PHE 199 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A ALA* 3.5 31.2 - - + -
154A GLN* 4.3 15.0 - - - -
195A ALA 3.8 14.6 - - - -
196A GLN* 3.6 11.9 + - - +
197A GLU 3.4 0.6 - - - -
198A VAL* 1.3 74.4 - - + +
200A PHE* 1.3 63.2 + - - +
202A LYS* 3.9 11.8 - - + +
203A ALA* 3.1 26.9 + - - +
216A LEU* 3.5 5.0 - - + +
337A LEU* 3.3 60.6 - - + -
338A VAL* 5.3 0.9 - - + -
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Residues in contact with PHE 200 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196A GLN 3.3 7.4 + - - +
197A GLU* 2.9 17.7 + - - +
199A PHE* 1.3 77.8 - - - +
201A LEU* 1.3 82.6 + - + +
203A ALA* 3.7 2.5 - - - +
204A THR* 3.0 41.8 + - + -
213A ILE* 3.5 30.9 - - + +
216A LEU* 4.0 12.2 - - - +
217A ALA* 3.7 27.6 - - + +
220A ALA* 5.4 0.4 - - + -
252A MET* 4.1 17.3 - - + -
255A ASN* 3.2 44.0 - - + -
259A HIS* 4.3 4.3 - - - -
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Residues in contact with LEU 201 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4A PHE* 4.8 18.4 - - + -
140A LEU* 5.2 21.8 - - + +
146A LEU* 5.2 5.4 - - + -
197A GLU* 3.0 21.1 + - - +
198A VAL* 2.3 36.5 + - + +
200A PHE* 1.3 86.9 - - + +
202A LYS* 1.3 64.2 + - - +
204A THR* 3.2 18.4 - - + +
205A ARG* 3.0 19.5 + - - +
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Residues in contact with LYS 202 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A ASP* 4.6 20.1 + - - +
146A LEU* 4.8 22.2 - - + +
147A LYS* 5.2 15.1 - - + +
198A VAL* 2.7 17.2 + - + +
199A PHE* 3.9 13.0 - - + +
201A LEU* 1.3 66.0 - - - +
203A ALA* 1.3 55.8 + - - +
204A THR 2.3 18.4 + - - -
205A ARG* 2.3 25.5 + - + +
206A ASP* 3.1 33.1 + - - +
208A MET* 6.2 0.2 - - - -
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Residues in contact with ALA 203 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199A PHE 3.1 19.1 + - - +
200A PHE* 3.7 4.5 - - - +
202A LYS* 1.3 77.2 - - - +
204A THR* 1.3 56.1 + - - +
206A ASP* 4.1 1.1 - - - +
207A LYS 3.7 0.3 + - - -
208A MET* 3.0 61.7 + - + +
212A ILE* 5.0 1.8 - - + -
213A ILE* 3.6 14.7 - - + +
216A LEU* 3.8 17.9 - - + -
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Residues in contact with THR 204 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200A PHE* 3.0 30.3 + - + -
201A LEU* 3.2 23.3 - - + +
202A LYS 2.3 12.9 + - - -
203A ALA* 1.3 69.2 - - - +
205A ARG* 1.3 66.0 - - + +
207A LYS* 3.2 17.2 + - - +
213A ILE* 3.7 27.4 - - - +
259A HIS* 4.0 6.1 + - - -
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Residues in contact with ARG 205 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140A LEU 4.2 5.7 + - - -
141A ASP* 2.7 60.7 + - - +
143A ASP* 4.4 14.8 + - - +
146A LEU* 4.5 13.5 - - - -
201A LEU 3.0 12.7 + - - +
202A LYS* 2.3 25.3 + - - +
204A THR* 1.3 65.6 - - + +
206A ASP* 1.3 64.3 + - - +
207A LYS* 2.9 23.3 + - - +
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Residues in contact with ASP 206 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A ASP* 4.3 11.1 - - - +
202A LYS* 3.1 35.3 + - - +
203A ALA* 4.0 0.4 - - - -
205A ARG* 1.3 82.5 - - - +
207A LYS* 1.3 68.9 + - - +
208A MET* 2.8 23.4 + - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il