Contacts of the helix formed by residues 429 - 470 (chain A) in PDB entry 2OEV
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 429 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
424A VAL 3.1 17.9 + - - -
425A ILE* 2.7 11.4 + - - -
427A GLN 3.6 0.8 - - - -
428A GLY* 1.3 75.9 - - - +
430A ILE* 1.3 62.8 + - - -
431A GLN* 2.9 7.4 - - - -
432A THR* 3.0 15.8 + - - -
524A CYS* 3.5 15.7 - - - -
663A PHE* 3.6 13.6 - - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 430 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429A GLY* 1.3 71.4 - - - -
431A GLN* 1.3 73.8 + - - +
433A VAL* 2.9 35.7 + - + +
434A ASP* 2.9 40.3 + - - +
513A TYR* 4.3 1.3 - - + -
517A ARG* 3.8 38.4 - - + +
520A ILE* 3.8 33.4 - - + -
521A VAL* 5.3 10.5 - - + +
524A CYS* 3.2 16.6 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 431 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
428A GLY* 3.2 17.9 - - - +
429A GLY* 2.9 1.6 - - - -
430A ILE* 1.3 93.6 + - - +
432A THR* 1.3 55.6 + - - +
434A ASP* 3.7 10.8 - - + +
435A GLN* 3.1 32.3 + - + +
524A CYS* 6.0 0.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 432 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
427A GLN 3.2 25.7 + - - +
428A GLY* 3.3 10.8 + - - -
429A GLY 3.0 15.8 + - - -
431A GLN* 1.3 77.7 - - - +
433A VAL* 1.3 59.7 + - - +
435A GLN* 3.4 9.0 - - + +
436A LEU* 3.2 36.0 + - + +
663A PHE* 4.4 6.9 - - - -
667A VAL* 5.1 7.5 - - - +
671A LYS* 6.1 6.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with VAL 433 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430A ILE* 2.9 17.5 + - + +
432A THR* 1.3 75.4 - - - +
434A ASP* 1.3 60.2 + - - +
435A GLN 3.2 1.3 - - - -
436A LEU* 3.3 5.3 + - - +
437A ILE* 2.8 30.9 + - + +
513A TYR* 3.4 32.1 - - + -
520A ILE* 5.3 2.2 - - + -
663A PHE* 3.5 37.9 - - + +
666A LEU* 4.7 14.8 - - + -
667A VAL* 3.9 16.4 - - + +
670A LEU* 4.6 11.8 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 434 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
430A ILE* 2.9 38.4 + - - +
431A GLN* 3.7 11.7 + - + +
433A VAL* 1.3 72.1 - - - +
435A GLN* 1.3 66.3 + - - +
437A ILE* 3.4 11.4 - - - +
438A LYS* 3.1 25.6 + - - +
513A TYR* 2.7 21.8 + - - +
517A ARG* 3.1 25.3 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 435 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431A GLN 3.1 25.3 + - - +
432A THR* 3.4 14.1 - - + +
434A ASP* 1.3 79.0 - - - +
436A LEU* 1.3 66.1 + - + +
438A LYS* 3.2 4.9 + - - +
439A GLU* 3.1 33.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 436 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
432A THR* 3.2 21.7 + - + +
433A VAL* 4.0 1.6 - - - +
435A GLN* 1.3 79.2 - - + +
437A ILE* 1.3 65.8 + - - +
439A GLU* 3.6 24.6 - - - +
440A LEU* 3.2 29.1 + - - +
667A VAL* 4.7 13.2 - - + +
670A LEU* 3.7 37.5 - - + +
671A LYS* 4.3 26.2 - - + +
674A THR* 4.2 15.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 437 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
433A VAL 2.8 20.8 + - - +
434A ASP* 3.4 9.0 - - - +
436A LEU* 1.3 76.9 - - - +
438A LYS* 1.3 63.2 + - + +
440A LEU* 5.0 7.4 - - + -
441A PRO* 3.5 18.5 - - - +
506A ASP 5.6 0.9 - - - +
509A VAL* 5.0 4.3 - - + -
510A LYS* 4.4 35.7 - - + +
513A TYR* 3.5 54.3 - - + +
666A LEU* 6.5 0.4 - - + -
670A LEU* 4.2 22.8 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LYS 438 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
434A ASP 3.1 19.4 + - - +
435A GLN* 3.4 4.7 - - - +
436A LEU 3.2 0.2 - - - -
437A ILE* 1.3 81.9 - - + +
439A GLU* 1.3 65.0 + - + +
440A LEU 3.5 0.7 + - - -
441A PRO* 3.8 12.1 - - - +
442A GLU* 4.0 23.2 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 439 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
435A GLN* 3.1 26.4 + - - +
436A LEU* 3.6 22.3 - - - +
438A LYS* 1.3 78.5 - - + +
440A LEU* 1.3 61.3 + - - +
441A PRO 3.7 0.2 - - - -
442A GLU* 3.0 18.6 - - + +
443A LEU* 3.0 53.5 + - + +
674A THR* 3.7 19.2 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 440 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
436A LEU 3.2 16.6 + - - +
437A ILE* 4.7 8.5 - - + +
439A GLU* 1.3 75.6 - - - +
441A PRO* 1.4 71.3 - - + +
442A GLU 3.0 1.1 - - - -
443A LEU* 2.9 11.3 + - + +
444A LEU* 2.8 26.0 + - - +
506A ASP* 3.3 36.3 - - + +
509A VAL* 6.4 0.9 - - + -
670A LEU* 4.5 22.2 - - + +
673A GLY* 5.1 2.0 - - - -
674A THR* 4.5 21.8 - - - +
677A TYR* 3.7 35.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with PRO 441 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
437A ILE 3.5 16.6 - - - +
438A LYS 3.8 9.9 - - - +
440A LEU* 1.4 99.5 - - + +
442A GLU* 1.3 52.4 + - + +
444A LEU* 3.4 20.8 - - + +
445A GLN* 2.8 33.6 + - - +
506A ASP* 5.5 1.6 - - + +
510A LYS* 4.2 22.4 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 442 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
438A LYS* 4.0 31.6 - - - +
439A GLU* 3.0 20.7 + - + +
440A LEU 3.0 0.6 - - - -
441A PRO* 1.3 79.8 - - + +
443A LEU* 1.3 50.2 + - + +
445A GLN* 3.1 6.6 + - - +
446A ARG* 2.7 40.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 443 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
439A GLU* 3.0 39.1 + - + +
440A LEU* 2.9 12.1 + - + +
442A GLU* 1.3 72.6 - - + +
444A LEU* 1.3 63.3 + - - +
446A ARG* 3.4 38.3 - - - +
447A ASN* 3.0 29.5 + - - +
674A THR* 3.8 20.2 - - + +
677A TYR* 5.0 14.1 - - + +
678A ASN* 3.8 28.9 - - - +
681A THR* 4.6 5.2 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 444 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
440A LEU 2.8 10.4 + - - +
441A PRO* 3.4 25.6 - - + +
443A LEU* 1.3 74.5 - - - +
445A GLN* 1.3 70.3 + - + +
447A ASN* 3.3 7.7 + - - +
448A ARG* 3.2 25.5 + - + +
499A LEU* 4.0 23.6 - - + +
502A ALA* 5.0 5.2 - - + +
503A VAL* 3.3 49.4 - - + +
506A ASP* 5.1 9.4 - - - +
677A TYR* 5.4 13.5 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with GLN 445 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
441A PRO 2.8 21.1 + - - +
442A GLU* 3.1 8.3 + - - +
444A LEU* 1.3 74.6 - - - +
446A ARG* 1.3 67.6 + - - +
447A ASN 3.0 2.0 - - - -
448A ARG* 2.9 33.8 + - - +
449A GLU* 3.1 34.1 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 446 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
442A GLU* 2.7 25.2 + - - +
443A LEU* 3.4 45.0 - - - +
445A GLN* 1.3 72.8 - - - +
447A ASN* 1.3 64.5 + - - +
449A GLU* 3.6 14.9 + - - +
450A ILE* 3.3 29.0 + - + +
681A THR* 3.9 24.2 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 447 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
443A LEU 3.0 15.6 + - - +
444A LEU* 3.3 8.8 + - - +
445A GLN 3.0 0.8 - - - -
446A ARG* 1.3 78.6 - - - +
448A ARG* 1.3 65.7 + - - +
449A GLU 3.1 1.3 - - - -
450A ILE* 3.6 6.9 - - - +
451A LEU* 2.9 25.9 + - - +
499A LEU* 4.6 13.9 - - + -
677A TYR* 3.6 10.3 + - - +
680A LEU* 3.7 9.9 - - - +
681A THR* 3.2 48.2 + - - +
684A LEU* 3.4 24.1 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 448 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
444A LEU* 3.2 21.3 + - + +
445A GLN* 2.9 28.3 + - - +
447A ASN* 1.3 75.3 - - - +
449A GLU* 1.3 56.7 + - - +
451A LEU* 3.4 4.9 + - - +
452A ASP* 3.0 45.0 + - - +
496A ARG* 3.2 38.7 - - - +
499A LEU* 4.0 24.0 - - + +
500A ASP* 2.8 31.7 + - - +
503A VAL* 4.7 12.7 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 449 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
445A GLN* 3.1 43.8 + - - +
446A ARG* 3.7 12.0 + - - +
448A ARG* 1.3 74.7 - - - +
450A ILE* 1.3 66.5 + - + +
452A ASP* 4.6 2.7 - - - +
453A GLU* 3.1 42.1 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with ILE 450 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
446A ARG* 3.3 24.2 + - + +
447A ASN* 3.2 11.7 + - - +
449A GLU* 1.3 78.9 - - + +
451A LEU* 1.3 58.0 + - - +
453A GLU* 5.0 5.6 - - - +
454A SER* 2.7 31.6 + - - +
681A THR* 5.0 11.4 - - + +
684A LEU* 3.5 41.5 - - + +
685A VAL* 4.6 7.0 - - + +
687A PHE* 6.5 0.2 - - + -
688A GLN* 3.6 28.8 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 451 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
447A ASN 2.9 16.3 + - - +
448A ARG* 3.6 6.3 - - - +
450A ILE* 1.3 78.7 - - - +
452A ASP* 1.3 71.8 + - - +
454A SER* 3.0 9.2 + - - -
455A LEU* 2.9 28.3 + - + +
492A GLY* 4.5 10.5 - - - +
495A PHE* 3.6 34.8 - - + -
496A ARG* 3.9 28.5 - - - +
499A LEU* 4.5 14.1 - - + -
684A LEU* 3.8 19.3 - - + -
687A PHE* 4.4 15.4 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 452 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
448A ARG* 3.0 27.6 + - - +
449A GLU* 4.5 2.2 - - - +
451A LEU* 1.3 78.8 - - - +
453A GLU* 1.3 61.7 + - - +
454A SER 3.1 1.1 - - - -
455A LEU* 4.2 5.1 - - - +
456A ARG* 2.8 32.2 + - - +
496A ARG* 2.9 42.8 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 453 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449A GLU* 3.1 31.5 + - + +
450A ILE* 5.0 5.9 - - - +
452A ASP* 1.3 76.9 - - - +
454A SER* 1.3 57.4 + - - +
456A ARG* 3.7 14.0 + - - +
457A LEU* 3.2 33.4 + - + +
688A GLN* 3.4 20.4 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with SER 454 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
450A ILE* 2.7 19.0 + - - +
451A LEU 3.0 10.6 + - - -
453A GLU* 1.3 77.8 - - - +
455A LEU* 1.3 62.4 + - - +
457A LEU* 3.6 21.1 - - - +
458A LEU* 3.7 13.5 - - - +
687A PHE* 4.1 19.1 - - - -
688A GLN* 3.2 36.0 + - - +
691A CYS* 3.7 11.8 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 455 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
451A LEU* 2.9 18.2 + - + +
452A ASP* 4.2 6.3 - - - +
454A SER* 1.3 75.0 - - - +
456A ARG* 1.3 61.6 + - - +
457A LEU 3.3 0.2 - - - -
458A LEU* 3.1 13.2 + - + +
459A ASP* 2.9 34.5 + - - +
488A LEU 5.8 1.1 - - - +
489A ARG* 3.9 33.7 - - + +
492A GLY* 4.6 24.9 - - - +
493A THR 5.5 0.2 - - - +
496A ARG* 3.7 25.6 - - - +
687A PHE* 5.8 4.7 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 456 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
452A ASP 2.8 21.5 + - - +
453A GLU* 3.7 15.5 + - - +
455A LEU* 1.3 73.8 - - - +
457A LEU* 1.3 66.9 + - - +
459A ASP* 3.0 10.0 + - + +
460A GLU* 2.6 68.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 457 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453A GLU* 3.2 21.7 + - + +
454A SER* 3.6 15.9 - - - +
456A ARG* 1.3 88.8 - - - +
458A LEU* 1.3 61.0 + - - +
460A GLU* 3.3 8.6 + - + +
461A GLU* 3.1 24.6 + - - +
688A GLN* 4.9 11.0 - - + +
691A CYS* 5.1 2.9 - - + +
692A SER* 4.8 25.1 - - - +
695A VAL* 4.2 25.9 - - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 458 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
454A SER 3.7 10.8 - - - +
455A LEU* 3.1 17.5 + - + +
457A LEU* 1.3 76.0 - - - +
459A ASP* 1.3 65.3 + - - +
461A GLU 3.5 0.2 + - - -
462A GLU* 3.1 25.8 + - - +
485A TYR* 3.7 43.2 - - + -
488A LEU* 4.3 26.7 - - + +
489A ARG* 3.9 25.3 + - + +
687A PHE* 5.3 0.9 - - + -
691A CYS* 3.9 35.7 - - + +
694A ILE* 5.3 0.9 - - + -
695A VAL* 4.4 9.9 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 459 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
455A LEU* 2.9 22.5 + - - +
456A ARG* 3.6 11.0 - - + +
458A LEU* 1.3 76.3 - - - +
460A GLU* 1.3 63.4 + - - +
462A GLU* 3.9 4.5 - - - +
463A ALA* 3.3 20.8 + - - +
489A ARG* 2.6 39.5 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 460 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
456A ARG* 2.6 47.3 + - - +
457A LEU* 3.4 8.3 - - + +
459A ASP* 1.3 74.1 - - - +
461A GLU* 1.3 66.0 + - - +
463A ALA* 3.2 16.7 + - - +
464A THR* 3.4 22.9 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 461 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
457A LEU 3.1 9.6 + - - +
458A LEU 4.1 1.3 - - - +
460A GLU* 1.3 83.8 + - - +
462A GLU* 1.3 66.3 + - - +
464A THR* 2.6 33.7 + - - +
465A ASP* 3.0 10.9 + - - +
476A TRP* 4.9 5.9 - - - -
481A SER* 3.0 22.8 + - - -
485A TYR* 2.6 30.4 + - - +
695A VAL* 3.6 33.9 - - + -
698A ARG* 4.0 18.7 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with GLU 462 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
458A LEU 3.1 16.8 + - - +
459A ASP* 3.9 6.8 - - - +
460A GLU 3.3 0.2 - - - -
461A GLU* 1.3 83.3 + - - +
463A ALA* 1.3 62.5 + - - +
465A ASP* 3.1 18.9 + - - +
466A ASN* 3.3 23.8 + - - +
481A SER* 4.1 4.9 - - - -
482A ASN* 3.3 41.3 + - + +
485A TYR* 4.4 5.6 - - + -
489A ARG* 2.7 35.9 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 463 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
459A ASP 3.3 10.3 + - - +
460A GLU* 3.2 12.2 + - - +
461A GLU 3.1 0.6 - - - -
462A GLU* 1.3 79.0 - - - +
464A THR* 1.3 61.4 + - + +
466A ASN* 3.6 11.2 + - - +
467A ASP* 3.5 26.0 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with THR 464 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
460A GLU* 3.6 29.6 - - - +
461A GLU* 2.6 33.3 + - - +
463A ALA* 1.3 72.1 - - + +
465A ASP* 1.3 67.0 + - - +
466A ASN 3.1 0.9 + - - -
467A ASP* 3.6 4.6 + - - +
468A LEU* 3.3 33.7 + - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 465 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
461A GLU* 3.0 5.9 + - - +
462A GLU 3.2 11.7 - - - +
464A THR* 1.3 83.2 + - - +
466A ASN* 1.3 65.7 + - - +
468A LEU* 3.3 16.1 - - - +
469A ARG* 3.2 37.6 + - - +
476A TRP* 2.6 38.5 + - - +
478A ARG* 5.4 0.3 + - - -
479A THR 4.4 2.0 - - - +
480A PRO* 3.6 1.9 - - - +
481A SER* 2.8 49.1 + - - +
698A ARG* 5.3 1.2 + - - -
----------------------------------------------------------
Back to top of page
Residues in contact with ASN 466 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
462A GLU* 3.3 34.1 + - - +
463A ALA* 3.9 10.1 - - - +
464A THR 3.1 0.8 - - - -
465A ASP* 1.3 79.9 - - - +
467A ASP* 1.3 67.7 + - - +
468A LEU 2.7 5.7 + - - -
469A ARG* 2.9 9.9 + - - +
470A ALA* 2.9 28.4 + - + +
482A ASN* 5.6 2.3 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ASP 467 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
463A ALA 3.5 13.9 + - - +
464A THR* 4.1 5.2 - - - +
466A ASN* 1.3 77.6 - - - +
468A LEU* 1.3 58.3 + - + +
470A ALA* 4.8 3.4 - - - -
471A LYS* 3.0 58.3 + - + +
----------------------------------------------------------
Back to top of page
Residues in contact with LEU 468 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
464A THR* 3.3 25.2 + - - +
465A ASP 3.3 8.5 - - - +
466A ASN 2.7 4.8 + - - -
467A ASP* 1.3 74.4 - - + +
469A ARG* 1.3 54.1 + - - +
471A LYS 3.3 2.1 + - - -
472A PHE* 2.8 60.3 + - + +
476A TRP* 3.7 53.2 - - + -
----------------------------------------------------------
Back to top of page
Residues in contact with ARG 469 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
465A ASP* 3.2 35.3 + - - -
466A ASN* 2.9 11.3 + - - +
468A LEU* 1.3 66.9 - - - +
470A ALA* 1.3 53.7 + - - +
471A LYS 2.7 16.3 + - - -
472A PHE* 2.9 13.2 + - - +
474A GLU* 3.5 34.4 + - - +
476A TRP* 3.1 40.9 - - + +
477A GLN* 5.3 3.8 - - - +
478A ARG 2.9 25.5 + - - +
479A THR 3.6 0.6 + - - -
480A PRO* 3.1 44.7 - - - +
----------------------------------------------------------
Back to top of page
Residues in contact with ALA 470 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
466A ASN* 2.9 19.4 + - + +
467A ASP* 3.7 4.3 - - - +
469A ARG* 1.3 74.3 - - - +
471A LYS* 1.3 69.9 + - - +
----------------------------------------------------------
Back to top of page
A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il