Contacts of the helix formed by residues 296 - 342 (chain C) in PDB entry 2R2N
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 296 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115C SER* 4.8 0.6 + - - -
269C LEU 5.2 1.6 - - - -
270C ARG 5.5 0.8 + - - -
271C ILE* 4.4 2.0 - - - +
294C HIS 3.8 1.0 + - - -
295C PRO* 1.3 72.0 - - - +
297C THR* 1.3 63.4 + - - +
298C PHE* 3.5 5.9 + - - +
299C ASN* 3.2 30.3 + - - +
300C GLN* 3.1 21.1 + - - +
268D GLY 3.5 10.5 + - - -
269D LEU* 4.0 6.7 - - - -
270D ARG* 4.0 8.2 - - - +
296D SER* 5.0 3.1 - - - -
299D ASN* 2.8 27.5 + - - -
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Residues in contact with THR 297 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70C ARG* 3.3 18.9 + - - +
71C ALA* 3.9 4.5 - - - +
73C GLN 2.6 29.8 - - - +
75C SER* 3.2 31.8 + - - +
80C ILE* 4.2 6.9 - - - +
294C HIS* 3.5 12.1 - - - +
295C PRO 3.0 2.3 + - - -
296C SER* 1.3 69.6 - - - +
298C PHE* 1.3 58.7 + - - +
300C GLN* 3.3 7.9 + - - +
301C LEU* 2.9 38.8 + - - +
268D GLY* 3.2 11.7 + - - -
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Residues in contact with PHE 298 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51C ALA* 4.1 14.4 - - + -
53C ILE* 4.2 2.5 - - + -
63C PHE* 3.7 15.0 - + - -
68C MET* 3.7 26.5 - - + -
71C ALA* 3.1 38.3 + - + +
72C LEU* 4.0 13.7 - - + -
296C SER* 3.7 3.1 - - - +
297C THR* 1.3 74.4 - - - +
299C ASN* 1.3 70.0 + - - +
301C LEU* 3.2 4.9 + - - +
302C MET* 2.9 42.3 + - + +
53D ILE* 4.3 5.8 - - + -
269D LEU* 3.7 19.5 - - + -
298D PHE* 3.6 26.9 - + - -
299D ASN* 4.3 2.0 - - - -
302D MET* 4.1 18.4 - - + -
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Residues in contact with ASN 299 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269C LEU* 3.0 47.2 - - + +
271C ILE* 4.1 8.1 - - + -
296C SER* 3.2 18.8 + - - +
298C PHE* 1.3 81.4 - - - +
300C GLN* 1.3 65.8 + - - +
302C MET* 3.4 9.7 + - - +
303C ILE* 3.1 28.9 + - - +
296D SER* 2.8 26.3 + - - -
298D PHE* 4.4 0.8 - - - -
299D ASN* 3.1 25.4 - - - +
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Residues in contact with GLN 300 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C SER* 4.3 5.1 + - - -
79C GLY* 3.2 8.8 - - - -
80C ILE* 2.9 53.0 + - + +
83C LEU* 3.6 24.6 - - + +
113C VAL* 3.6 9.8 - - + +
271C ILE* 4.0 16.1 - - + +
295C PRO* 3.3 35.0 + - - +
296C SER 3.1 10.4 + - - +
297C THR* 3.5 7.6 - - - +
299C ASN* 1.3 73.6 - - - +
301C LEU* 1.3 55.1 + - - +
303C ILE* 3.3 3.1 + - - +
304C SER* 2.7 37.6 + - - -
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Residues in contact with LEU 301 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63C PHE* 3.8 15.5 - - + -
67C MET* 4.0 22.4 - - + -
70C ARG* 3.7 31.9 - - + +
71C ALA* 3.7 37.7 - - + +
80C ILE* 3.8 19.1 - - + -
82C GLU* 4.1 5.8 - - + +
297C THR* 2.9 26.3 + - - +
298C PHE 3.6 4.7 - - - +
300C GLN* 1.3 73.2 - - - +
302C MET* 1.3 62.7 + - - +
304C SER* 4.5 1.6 - - - +
305C GLN* 3.1 36.4 + - + +
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Residues in contact with MET 302 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
53C ILE* 3.7 31.2 - - + -
61C ILE* 3.6 12.5 - - + +
63C PHE* 3.9 11.6 - - + -
269C LEU* 4.1 15.0 - - + -
298C PHE* 2.9 40.5 + - + +
299C ASN* 3.6 19.5 - - - +
300C GLN 3.3 0.4 - - - -
301C LEU* 1.3 75.3 - - - +
303C ILE* 1.3 63.1 + - + +
306C LEU* 3.2 24.1 + - - +
48D PHE* 3.7 39.2 - - + -
72D LEU* 4.7 0.7 - - + -
298D PHE* 4.0 19.3 - - + -
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Residues in contact with ILE 303 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C LEU* 4.5 6.7 - - + -
261C PHE* 4.0 22.0 - - + -
265C ILE* 4.2 21.5 - - + -
266C SER* 5.7 1.3 - - - +
269C LEU* 3.9 24.0 - - + -
271C ILE* 3.6 38.8 - - + -
299C ASN 3.1 11.9 + - - +
300C GLN* 3.9 4.3 - - - +
302C MET* 1.3 75.4 - - - +
304C SER* 1.3 60.8 + - - +
306C LEU* 3.2 4.1 + - - +
307C LEU* 2.9 52.0 + - + +
48D PHE* 4.2 5.6 - - + -
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Residues in contact with SER 304 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C ILE* 4.1 8.5 - - - -
82C GLU* 3.4 15.6 - - - +
83C LEU* 3.8 29.3 + - - +
300C GLN 2.7 21.3 + - - -
301C LEU* 4.3 2.2 - - - -
303C ILE* 1.3 73.1 - - - +
305C GLN* 1.3 60.3 + - - +
307C LEU* 4.4 2.5 - - - -
308C HIS* 2.7 56.9 + - - -
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Residues in contact with GLN 305 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61C ILE* 3.6 32.5 - - + +
62C GLN 4.1 11.1 + - - +
63C PHE* 3.7 11.4 - - - -
67C MET* 3.6 33.5 - - - +
82C GLU* 6.5 0.9 - - + -
301C LEU* 3.1 27.7 + - + +
302C MET 4.1 2.5 - - - +
304C SER* 1.3 76.7 - - - +
306C LEU* 1.3 65.7 + - - +
308C HIS* 4.3 3.9 - - - +
309C GLU* 3.1 27.4 + - - +
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Residues in contact with LEU 306 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55C VAL* 3.5 37.9 - - + -
58C GLY* 5.8 0.2 - - - -
61C ILE* 4.0 9.5 - - + +
265C ILE* 4.2 9.9 - - + -
302C MET 3.2 18.6 + - - +
303C ILE* 3.5 3.8 - - - +
305C GLN* 1.3 78.7 - - - +
307C LEU* 1.3 67.9 + - + +
309C GLU* 3.3 3.1 + - - +
310C TRP* 3.0 64.3 + - + +
47D PRO* 3.7 25.6 - - + -
48D PHE* 3.8 14.4 - - + -
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Residues in contact with LEU 307 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C LEU* 4.0 13.0 - - + -
86C TRP* 3.5 53.4 + - + -
261C PHE* 3.8 14.8 - - + -
265C ILE* 3.9 24.7 - - + -
303C ILE* 2.9 34.5 + - + +
304C SER* 3.8 4.5 - - - +
306C LEU* 1.3 86.8 - - + +
308C HIS* 1.3 55.8 + - - +
310C TRP* 3.9 8.0 - - + +
311C GLY* 2.9 27.0 + - - -
315C PHE* 4.0 16.6 - - + -
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Residues in contact with HIS 308 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C GLU* 3.2 32.9 + - + +
85C SER* 5.1 2.0 + - - -
86C TRP* 3.6 30.8 + + + +
304C SER* 2.7 47.9 + - - +
305C GLN* 4.3 4.3 - - - +
307C LEU* 1.3 75.3 - - - +
309C GLU* 1.3 63.4 + - - +
311C GLY* 3.5 9.5 + - - -
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Residues in contact with GLU 309 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C GLY* 6.0 0.2 - - - -
59C LYS* 3.7 52.6 + - + +
61C ILE* 6.5 0.4 - - + -
305C GLN 3.1 19.2 + - - +
306C LEU* 3.8 3.8 - - - +
308C HIS* 1.3 78.5 - - - +
310C TRP* 1.3 66.3 + - + +
311C GLY 3.6 0.2 + - - -
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Residues in contact with TRP 310 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56C GLU 4.4 3.1 - - - -
57C ASN 3.0 27.1 + - - -
58C GLY* 4.0 10.1 - - - -
265C ILE* 4.9 2.2 - - + -
306C LEU* 3.0 43.0 + - + +
307C LEU* 3.9 11.7 - - + +
309C GLU* 1.3 78.9 - - + +
311C GLY* 1.3 66.1 + - - +
313C GLU* 4.3 2.9 + - - +
314C GLY* 2.9 37.8 + - - -
315C PHE* 3.7 24.5 - + - -
318C HIS* 3.4 39.7 - + + -
321C ARG* 4.8 2.0 - - - +
429C GOL 3.8 13.9 - - - -
47D PRO* 3.7 30.5 - - + -
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Residues in contact with GLY 311 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C TRP* 4.2 7.9 - - - -
307C LEU 2.9 17.4 + - - +
308C HIS 3.5 6.9 + - - -
309C GLU 3.3 3.8 - - - -
310C TRP* 1.3 81.6 - - - +
312C GLU* 1.3 67.6 + - - -
313C GLU* 3.2 1.6 - - - -
315C PHE* 2.9 18.5 + - - +
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Residues in contact with GLU 312 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C TRP* 3.9 21.7 + - + +
89C GLN* 4.1 8.8 - - - +
90C LEU* 3.8 45.0 + - + +
93C LYS* 3.2 44.4 + - - +
94C LEU* 6.2 0.7 - - + -
311C GLY* 1.3 71.2 - - - -
313C GLU* 1.3 56.2 + - - +
315C PHE* 3.3 4.9 + - + +
316C MET* 2.9 39.0 + - + +
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Residues in contact with GLU 313 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310C TRP 4.6 3.6 - - - +
311C GLY* 4.9 0.4 - - - -
312C GLU* 1.3 75.9 - - - +
314C GLY* 1.3 60.0 + - - +
316C MET* 3.4 3.9 + - - +
317C ALA* 2.9 33.4 + - + +
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Residues in contact with GLY 314 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310C TRP* 2.9 43.5 + - - -
313C GLU* 1.3 77.1 - - - +
315C PHE* 1.3 63.5 + - - +
317C ALA* 3.6 6.4 + - - +
318C HIS* 3.1 22.9 + - - +
321C ARG* 4.7 3.1 + - - -
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Residues in contact with PHE 315 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C TRP* 3.9 21.8 - + + -
90C LEU* 4.2 15.5 - - + -
235C PHE* 3.5 39.5 - + - -
261C PHE* 4.2 10.5 - + - -
264C ILE* 3.9 22.2 - - + -
265C ILE* 4.1 13.0 - - + -
307C LEU* 4.0 17.9 - - + -
310C TRP* 3.7 18.7 - + + +
311C GLY 2.9 16.8 + - - +
312C GLU 3.5 3.8 - - - +
314C GLY* 1.3 76.3 - - - +
316C MET* 1.3 75.4 + - + +
318C HIS* 3.1 7.2 + - - +
319C VAL* 2.9 43.8 + - + +
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Residues in contact with MET 316 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C LEU* 5.2 1.1 - - + -
94C LEU* 4.6 13.5 - - + -
235C PHE* 4.3 13.0 - - + -
242C ARG* 3.2 42.8 - - - +
312C GLU* 2.9 25.2 + - + +
313C GLU* 4.1 3.8 - - - +
315C PHE* 1.3 103.0 - - + +
317C ALA* 1.3 57.3 + - - +
319C VAL* 3.3 17.5 + - + +
320C ASP* 2.9 36.0 + - - +
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Residues in contact with ALA 317 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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313C GLU* 2.9 21.9 + - + +
314C GLY* 3.7 7.0 - - - +
315C PHE 3.3 0.2 - - - -
316C MET* 1.3 73.2 - - - +
318C HIS* 1.3 64.9 + - - +
320C ASP* 3.4 10.5 + - - +
321C ARG* 3.0 44.8 + - - +
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Residues in contact with HIS 318 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264C ILE* 2.7 35.4 - - + +
265C ILE* 4.4 6.9 - - + +
310C TRP* 3.4 29.6 - + + -
314C GLY 3.1 14.5 + - - +
315C PHE* 3.1 10.1 + - - +
317C ALA* 1.3 74.1 - - - +
319C VAL* 1.3 69.7 + - - +
321C ARG* 3.1 15.7 + - - +
322C VAL* 2.9 39.0 + - + +
429C GOL 2.8 37.9 - - - -
45D MET 3.1 21.0 + - - -
47D PRO* 4.2 4.9 - - + +
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Residues in contact with VAL 319 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235C PHE* 3.6 40.6 - - + +
242C ARG* 5.7 2.9 - - - +
264C ILE* 4.4 9.0 - - + -
315C PHE* 2.9 57.2 + - + +
316C MET* 3.3 17.9 + - + +
318C HIS* 1.3 79.4 - - - +
320C ASP* 1.3 55.0 + - - +
322C VAL* 3.3 8.5 + - - +
323C ILE* 2.8 50.5 + - + +
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Residues in contact with ASP 320 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240C LYS* 3.3 39.8 + - - +
316C MET* 2.9 20.6 + - - +
317C ALA* 3.6 12.1 - - - +
318C HIS 3.3 0.2 - - - -
319C VAL* 1.3 79.1 - - - +
321C ARG* 1.3 57.1 + - - +
323C ILE* 3.4 7.8 + - - +
324C ASP* 2.9 28.4 + - - +
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Residues in contact with ARG 321 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57C ASN* 3.4 27.8 + - - +
310C TRP* 4.8 3.0 - - - +
314C GLY* 4.7 2.8 + - - -
317C ALA* 3.0 41.1 + - - +
318C HIS* 3.1 13.7 + - - +
320C ASP* 1.3 75.9 - - + +
322C VAL* 1.3 64.8 + - - +
324C ASP* 3.4 9.1 + - - +
325C PHE* 3.0 22.2 + - - +
429C GOL 2.7 65.3 + - - +
45D MET* 4.8 1.7 - - - +
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Residues in contact with VAL 322 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
236C LEU* 3.6 18.8 - - + -
263C LYS 4.6 2.0 - - - +
264C ILE* 4.1 10.5 - - + +
318C HIS* 2.9 48.0 + - + +
319C VAL* 4.2 4.7 - - - +
321C ARG* 1.3 77.6 - - - +
323C ILE* 1.3 56.6 + - - +
325C PHE* 3.1 1.6 + - - +
326C TYR* 2.9 54.6 + - + -
429C GOL 4.3 2.0 - - - +
45D MET* 3.7 26.7 - - + -
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Residues in contact with ILE 323 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235C PHE 3.5 23.6 - - - +
236C LEU* 4.0 10.8 - - + -
237C GLN* 3.6 28.0 - - + +
238C PHE* 4.2 16.1 - - + +
240C LYS* 4.1 23.3 - - + +
242C ARG* 6.2 5.2 - - + -
319C VAL* 2.8 37.5 + - + +
320C ASP* 3.6 13.9 - - - +
322C VAL* 1.3 71.7 - - - +
324C ASP* 1.3 54.4 + - - +
326C TYR* 3.2 6.1 + - - +
327C SER* 2.7 39.2 + - - -
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Residues in contact with ASP 324 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
240C LYS* 2.4 36.7 + - - -
320C ASP* 2.9 12.1 + - - +
321C ARG* 3.5 11.4 - - - +
323C ILE* 1.3 77.4 - - - +
325C PHE* 1.3 61.9 + - - +
327C SER* 3.3 7.8 + - - -
328C ASN* 3.0 30.8 + - - +
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Residues in contact with PHE 325 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321C ARG 3.0 11.2 + - - +
322C VAL 3.6 6.3 - - - +
324C ASP* 1.3 75.5 - - - +
326C TYR* 1.3 78.4 + + - +
328C ASN* 3.1 11.1 + - + +
329C GLN* 3.0 55.2 + - + +
403C SER 3.4 17.5 - - - -
404C SER 5.7 0.4 - - - -
42D ASN* 3.2 31.4 - - + -
45D MET* 3.7 36.8 - - + -
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Residues in contact with TYR 326 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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236C LEU* 4.2 13.5 - - + -
238C PHE* 3.8 18.6 - - + -
263C LYS 4.3 4.9 + - - -
322C VAL* 2.9 48.5 + - + +
323C ILE 3.9 1.3 - - - +
325C PHE* 1.3 83.8 - + - +
327C SER* 1.3 57.8 + - - +
329C GLN* 3.4 2.4 + - - +
330C LYS* 2.9 30.0 + - - +
353C GLY 4.1 5.2 - - - +
354C MET* 3.4 43.1 - - + +
402C PHE* 3.6 9.9 - + - -
403C SER* 3.6 26.7 - - - -
41D PRO* 3.5 4.2 - - - +
42D ASN* 2.8 34.6 + - + +
45D MET* 4.0 13.9 - - + -
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Residues in contact with SER 327 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238C PHE* 3.7 21.4 + - - +
323C ILE* 2.7 26.4 + - - -
324C ASP* 3.5 8.3 - - - -
325C PHE 3.1 0.2 - - - -
326C TYR* 1.3 74.2 - - - +
328C ASN* 1.3 58.2 + - - +
330C LYS* 3.2 20.5 + - - +
331C ASP* 2.9 34.7 + - - -
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Residues in contact with ASN 328 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324C ASP* 3.0 20.8 + - - +
325C PHE* 3.1 11.1 + - + +
327C SER* 1.3 76.0 + - - +
329C GLN* 1.3 65.2 + - + +
331C ASP* 3.5 16.9 + - - +
332C ALA* 3.1 23.2 + - - +
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Residues in contact with GLN 329 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325C PHE* 3.0 52.2 + - + +
326C TYR* 3.6 9.0 - - - +
328C ASN* 1.3 77.4 - - + +
330C LYS* 1.3 57.0 + - - +
332C ALA* 3.2 9.3 + - - +
333C ILE* 3.0 25.5 + - - +
402C PHE* 2.9 38.8 + - + +
403C SER 3.8 8.1 + - - -
404C SER 3.8 6.8 - - - +
405C ALA 3.0 27.9 + - - +
406C SER* 5.3 0.5 - - - -
407C PRO* 5.3 6.6 - - - +
410C MET* 3.7 10.2 - - - +
----------------------------------------------------------
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Residues in contact with LYS 330 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238C PHE* 3.5 24.2 - - + +
326C TYR 2.9 14.3 + - - +
327C SER* 3.3 27.4 + - - +
329C GLN* 1.3 73.2 - - - +
331C ASP* 1.3 82.6 + - - +
333C ILE* 3.3 7.1 + - + +
334C LEU* 3.0 38.0 + - + +
349C VAL* 3.8 23.6 - - - -
350C PRO* 3.5 32.1 - - + +
402C PHE* 3.6 26.1 - - + -
----------------------------------------------------------
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Residues in contact with ASP 331 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327C SER* 2.9 20.4 + - - +
328C ASN* 3.7 21.4 + - - +
330C LYS* 1.3 94.1 + - - +
332C ALA* 1.3 58.5 + - - +
334C LEU* 3.3 8.6 + - - +
335C ALA* 2.9 31.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 332 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328C ASN 3.1 14.7 + - - +
329C GLN* 3.5 13.0 - - - +
330C LYS 3.2 0.2 - - - -
331C ASP* 1.3 77.8 - - - +
333C ILE* 1.3 62.3 + - - +
335C ALA* 3.4 7.6 + - - +
336C ALA* 3.0 22.0 + - - +
407C PRO* 4.6 22.2 - - + +
410C MET* 3.7 16.2 - - + +
----------------------------------------------------------
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Residues in contact with ILE 333 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
329C GLN 3.0 6.9 + - - -
330C LYS* 3.4 11.2 - - + +
332C ALA* 1.3 77.0 - - - +
334C LEU* 1.3 62.4 + - + +
336C ALA* 3.2 4.2 + - - +
337C ALA* 2.9 28.8 + - - +
356C LEU* 4.2 20.2 - - + -
400C ALA* 3.8 28.7 - - + -
401C SER 4.0 9.6 - - - +
402C PHE* 3.7 37.9 - - + -
410C MET* 3.4 22.2 - - + -
414C PHE* 3.6 25.5 - - + -
36D LEU* 4.3 3.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 334 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330C LYS* 3.0 46.7 + - + +
331C ASP* 3.5 8.1 - - - +
333C ILE* 1.3 78.5 - - + +
335C ALA* 1.3 59.1 + - - +
337C ALA* 3.3 3.8 + - - +
338C ASP* 2.9 40.3 + - - +
347C TRP* 3.7 32.4 - - + +
349C VAL* 4.0 18.2 - - + -
350C PRO* 4.3 7.4 - - + -
356C LEU* 3.9 17.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 335 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
331C ASP 2.9 20.5 + - - +
332C ALA* 3.6 8.3 - - - +
334C LEU* 1.3 73.3 - - - +
336C ALA* 1.3 56.8 + - - +
338C ASP* 3.4 8.2 + - - +
339C LYS* 2.9 31.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 336 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332C ALA 3.0 14.2 + - - +
333C ILE 3.2 8.0 + - - +
335C ALA* 1.3 73.1 - - - +
337C ALA* 1.3 66.0 + - - +
339C LYS* 3.4 6.5 + - - -
340C TRP* 3.0 31.3 + - - +
407C PRO 5.7 0.2 - - - +
410C MET* 4.0 21.5 - - + +
411C ASP* 4.5 5.4 - - + +
414C PHE* 3.8 24.7 - - + +
----------------------------------------------------------
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Residues in contact with ALA 337 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
333C ILE 2.9 19.1 + - - +
334C LEU 3.3 3.1 + - - +
336C ALA* 1.3 73.5 - - - +
338C ASP* 1.3 58.2 + - - +
341C LEU* 2.8 38.5 + - + +
342C THR 3.7 0.2 + - - -
347C TRP* 3.5 35.3 - - + +
356C LEU* 4.3 8.5 - - + -
358C ILE* 5.5 0.2 - - + -
414C PHE* 3.9 24.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 338 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
334C LEU* 2.9 25.8 + - - +
335C ALA* 3.6 6.9 - - - +
337C ALA* 1.3 78.6 - - - +
339C LYS* 1.3 64.2 + - - +
342C THR* 2.6 29.7 + - - +
347C TRP* 3.3 23.1 + - - -
----------------------------------------------------------
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Residues in contact with LYS 339 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
335C ALA 2.9 18.8 + - - +
336C ALA* 3.6 7.9 - - - +
337C ALA 3.3 0.2 - - - -
338C ASP* 1.3 80.6 - - - +
340C TRP* 1.3 84.5 + - + +
342C THR* 5.2 0.7 + - - -
411C ASP* 2.9 35.5 + - - +
----------------------------------------------------------
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Residues in contact with TRP 340 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
336C ALA* 3.0 20.7 + - - +
339C LYS* 1.3 107.8 - - + +
341C LEU* 1.3 61.6 + - + +
342C THR 3.6 2.1 + - - +
344C LEU* 3.6 8.8 - - - +
411C ASP* 2.9 33.5 + - - -
414C PHE* 3.4 26.7 - - + +
415C GLN* 3.4 46.7 - - + -
418C ALA* 3.4 20.0 - - + +
422C LYS* 6.3 0.9 - - - -
----------------------------------------------------------
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Residues in contact with LEU 341 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C ALA* 2.8 23.0 + - + +
340C TRP* 1.3 73.5 - - + +
342C THR* 1.3 68.0 + - - +
343C GLY 3.0 1.0 + - - -
344C LEU* 2.8 21.7 + - + -
345C ALA* 3.2 25.7 + - + +
347C TRP* 3.9 11.2 - - + -
358C ILE* 4.4 10.8 - - + -
414C PHE* 3.4 38.6 - - + +
417C LEU* 3.9 15.7 - - + -
418C ALA* 3.9 22.4 - - + +
421C ILE* 3.8 26.9 - - + -
----------------------------------------------------------
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Residues in contact with THR 342 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
337C ALA 3.7 1.4 + - - -
338C ASP* 2.6 34.0 + - - -
339C LYS 5.6 0.7 - - - -
340C TRP 3.6 2.7 - - - +
341C LEU* 1.3 75.4 - - - +
343C GLY* 1.3 63.6 + - - +
344C LEU* 3.2 9.4 + - - +
345C ALA 5.2 0.2 - - - -
347C TRP* 4.7 7.5 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il