Contacts of the helix formed by residues 259 - 297 (chain B) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130B PHE* 5.5 6.1 - - + -
255B GLY* 3.9 8.3 - - - -
256B GLU* 3.0 49.7 + - + +
257B PRO 3.3 1.5 - - - +
258B GLY* 1.3 76.6 - - - +
260B GLY* 1.3 64.8 + - - +
261B PHE 3.4 1.3 - - - -
262B LYS* 3.3 21.5 + - + +
263B ILE* 3.0 37.4 + - + +
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Residues in contact with GLY 260 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198B PHE* 3.1 13.9 - - - -
210B ILE* 2.7 38.5 + - - -
211B SER* 3.7 16.5 - - - +
212B ALA* 3.9 4.2 - - - +
256B GLU 4.8 0.2 + - - -
259B MET* 1.3 71.4 - - - +
261B PHE* 1.3 55.6 + - - +
263B ILE* 3.3 4.1 + - - +
264B ALA 2.9 25.1 + - - -
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Residues in contact with PHE 261 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154B LEU* 6.0 1.8 - - + -
163B ALA* 4.2 2.2 - - + -
164B GLY* 3.6 37.2 - - - -
210B ILE* 3.8 23.7 + - + +
258B GLY 4.6 3.2 + - - +
259B MET 3.4 0.6 - - - -
260B GLY* 1.3 74.0 - - - +
262B LYS* 1.3 58.0 + - - +
264B ALA* 3.4 6.7 + - + +
265B MET* 2.9 55.0 + - + +
502B COS 3.3 91.3 - - + -
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Residues in contact with LYS 262 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130B PHE* 5.5 8.1 - - + -
259B MET* 3.3 22.5 + - + +
261B PHE* 1.3 78.6 - - - +
263B ILE* 1.3 59.7 + - + +
265B MET* 3.3 5.9 + - - +
266B GLN* 2.9 61.1 + - - +
502B COS 4.0 19.5 - - - +
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Residues in contact with ILE 263 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126B PRO* 4.1 14.8 - - + -
130B PHE* 3.7 53.5 - - + -
198B PHE* 4.2 12.6 - - + -
212B ALA* 4.3 12.3 - - + -
254B LEU* 3.4 32.3 - - + +
255B GLY* 4.4 2.7 - - - -
259B MET* 3.0 34.7 + - + +
260B GLY* 3.7 4.7 - - - +
262B LYS* 1.3 75.8 - - + +
264B ALA* 1.3 55.6 + - - +
266B GLN* 3.4 2.1 + - - +
267B THR* 2.7 36.5 + - - +
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Residues in contact with ALA 264 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152B PHE* 4.4 1.2 - - + -
154B LEU* 4.0 26.0 - - + -
198B PHE* 3.3 34.4 - - + -
260B GLY 2.9 11.2 + - - +
261B PHE* 3.6 7.6 - - + +
263B ILE* 1.3 76.7 - - - +
265B MET* 1.3 67.5 + - + +
267B THR* 3.3 4.5 + - - -
268B LEU* 3.1 28.8 + - - +
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Residues in contact with MET 265 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154B LEU* 4.4 0.4 - - + -
163B ALA* 4.0 11.2 - - + -
261B PHE* 2.9 46.7 + - + +
262B LYS 3.8 2.5 - - - +
264B ALA* 1.3 81.4 - - + +
266B GLN* 1.3 63.1 + - - +
268B LEU* 3.4 25.2 + - + +
269B ASP* 3.3 26.7 + - - +
272B ARG* 5.6 2.0 + - - -
502B COS 3.3 87.7 + - + +
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Residues in contact with GLN 266 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129B LYS* 2.7 38.3 + - - +
130B PHE* 3.3 21.1 - - + -
262B LYS* 2.9 55.3 + - - +
263B ILE 4.0 2.5 - - - +
265B MET* 1.3 76.0 - - - +
267B THR* 1.3 62.2 + - - +
269B ASP* 3.6 21.2 - - - +
270B MET* 3.7 16.0 + - - +
341B PHE* 5.1 1.2 - - - -
502B COS 3.3 26.8 - - + +
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Residues in contact with THR 267 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121B SER 3.5 20.4 - - - +
122B LEU* 3.6 14.3 - - + +
126B PRO* 3.4 29.6 - - + +
130B PHE* 4.8 1.4 - - - -
152B PHE* 3.6 27.6 - - + -
263B ILE* 2.7 23.0 + - - +
264B ALA* 3.6 5.1 - - - -
265B MET 3.2 0.2 - - - -
266B GLN* 1.3 78.6 - - - +
268B LEU* 1.3 57.2 + - - +
270B MET* 3.1 15.2 + - - +
271B GLY* 2.9 23.7 + - - -
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Residues in contact with LEU 268 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122B LEU* 4.1 7.4 - - + -
152B PHE* 3.9 14.1 - - + -
154B LEU* 4.0 13.0 - - + -
264B ALA 3.1 20.7 + - - +
265B MET* 3.9 16.4 - - + +
266B GLN 3.4 0.2 - - - -
267B THR* 1.3 75.6 - - - +
269B ASP* 1.3 59.2 + - - +
270B MET 3.4 0.2 - - - -
271B GLY* 3.8 2.7 - - - +
272B ARG* 2.9 49.8 + - - +
392B GLU* 4.1 17.5 - - - +
502B COS 3.1 63.7 - - + +
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Residues in contact with ASP 269 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265B MET 3.3 10.9 + - - +
266B GLN* 3.6 15.7 - - - +
268B LEU* 1.3 76.1 - - - +
270B MET* 1.3 61.6 + - - +
272B ARG* 3.6 23.3 + - - +
273B ILE* 3.7 2.9 + - - +
341B PHE* 3.5 24.8 - - + -
342B ILE* 3.4 30.5 - - - +
345B ALA* 3.5 22.7 - - + +
502B COS 2.7 30.4 + - - -
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Residues in contact with MET 270 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B ASP* 5.8 0.4 - - - +
95B TYR* 3.5 24.5 - - - +
121B SER* 3.6 11.6 + - - +
125B GLY* 4.0 34.3 - - - +
126B PRO* 4.4 1.3 - - + -
129B LYS* 4.4 20.0 - - + +
130B PHE* 5.6 0.7 - - + -
266B GLN 3.7 19.5 - - - +
267B THR* 3.1 20.9 + - - +
269B ASP* 1.3 76.5 - - - +
271B GLY* 1.3 65.6 + - - +
273B ILE* 3.1 17.7 + - - +
274B GLY 3.4 6.9 + - - -
335B LYS* 3.7 38.4 - - + -
341B PHE* 4.1 10.3 - - + -
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Residues in contact with GLY 271 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B SER* 4.4 0.9 + - - -
121B SER* 3.6 20.1 - - - -
122B LEU* 3.8 5.8 - - - -
267B THR 2.9 14.5 + - - -
268B LEU 3.9 0.4 - - - -
269B ASP 3.5 0.2 - - - -
270B MET* 1.3 75.3 - - - +
272B ARG* 1.3 57.5 + - - +
274B GLY* 3.0 3.8 + - - -
275B ILE* 2.9 26.9 + - - +
392B GLU* 2.9 23.7 - - - +
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Residues in contact with ARG 272 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265B MET* 5.6 1.4 - - - -
268B LEU* 2.9 35.5 + - - +
269B ASP* 3.7 23.9 + - - +
270B MET 3.1 0.6 - - - -
271B GLY* 1.3 74.3 - - - +
273B ILE* 1.3 59.8 + - - +
275B ILE* 4.4 1.6 - - - +
276B ALA* 2.9 29.8 + - - +
342B ILE* 5.4 1.2 + - - +
345B ALA* 4.0 16.6 - - + +
346B ALA* 4.8 8.1 - - - +
349B LYS* 3.7 23.2 - - + +
392B GLU* 2.9 25.7 + - + +
397B ILE* 4.1 7.8 - - - +
398B GLN* 3.5 21.9 + - - +
401B VAL* 4.1 23.4 - - - +
502B COS 3.2 44.9 + - - -
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Residues in contact with ILE 273 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95B TYR* 3.9 30.1 - - + -
98B TYR* 5.3 1.1 - - + -
99B ALA* 4.4 12.8 - - + -
269B ASP 3.7 10.5 + - - +
270B MET 3.1 6.7 + - - +
272B ARG* 1.3 76.4 - - - +
274B GLY* 1.3 61.0 + - - +
276B ALA* 3.4 7.2 - - - +
277B SER* 2.9 28.4 + - - -
328B THR* 4.1 9.1 - - + +
331B ALA* 3.7 39.5 - - + +
332B ALA* 3.9 18.4 - - + +
335B LYS* 4.3 3.8 - - + -
341B PHE* 3.9 21.1 - - + -
345B ALA* 4.2 5.6 - - + +
348B ALA* 5.7 1.1 - - - -
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Residues in contact with GLY 274 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98B TYR* 3.8 20.5 - - - -
102B MET* 3.7 12.8 - - - +
117B SER* 3.5 18.6 - - - -
270B MET 3.4 4.4 + - - -
271B GLY 3.0 8.1 + - - -
273B ILE* 1.3 79.1 - - - +
275B ILE* 1.3 56.8 + - - +
277B SER* 3.3 4.6 + - - -
278B GLN 2.9 23.2 + - - -
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Residues in contact with ILE 275 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114B VAL* 4.5 7.4 - - + -
117B SER* 4.0 18.8 - - - +
271B GLY 2.9 11.8 + - - +
272B ARG* 4.2 3.1 - - - +
274B GLY* 1.3 69.4 - - - +
276B ALA* 1.3 66.9 + - - +
278B GLN* 3.2 17.6 + - + +
279B ALA* 2.8 23.1 + - + +
349B LYS* 4.1 27.1 - - + -
353B SER* 5.9 0.2 - - - -
388B THR* 4.1 13.9 - - - +
391B TYR* 3.8 31.2 - - + +
392B GLU* 3.3 42.8 - - + +
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Residues in contact with ALA 276 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272B ARG 2.9 20.0 + - - +
273B ILE* 3.4 7.9 - - - +
275B ILE* 1.3 76.0 - - - +
277B SER* 1.3 58.4 + - - +
279B ALA* 3.1 5.1 + - - +
280B LEU* 2.9 25.8 + - - +
328B THR* 3.4 24.9 - - + +
348B ALA* 3.8 21.8 - - + +
349B LYS* 4.2 5.2 - - - +
352B ALA* 3.3 16.3 - - - +
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Residues in contact with SER 277 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99B ALA* 3.2 42.9 + - - +
102B MET* 3.4 15.9 - - - -
103B GLU* 3.5 13.1 - - - -
273B ILE 2.9 13.8 + - - -
274B GLY* 3.5 4.9 - - - -
276B ALA* 1.3 73.5 - - - +
278B GLN* 1.3 65.6 + - - +
279B ALA 3.1 1.1 - - - -
280B LEU* 3.2 11.8 + - - +
281B GLY 3.1 17.8 + - - -
328B THR* 3.6 5.7 - - - +
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Residues in contact with GLN 278 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102B MET* 3.5 15.3 - - + +
106B SER* 3.4 28.6 - - - +
110B ALA* 3.0 30.0 + - + +
114B VAL* 3.7 13.2 - - - +
233B ILE* 3.9 11.5 - - - +
274B GLY 2.9 11.1 + - - +
275B ILE* 3.2 14.0 + - + +
277B SER* 1.3 75.4 - - - +
279B ALA* 1.3 61.5 + - - +
281B GLY 3.1 7.8 + - - -
282B ILE* 3.2 18.6 + - + +
388B THR* 3.6 20.1 - - - +
391B TYR* 2.6 32.2 + - - -
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Residues in contact with ALA 279 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275B ILE 2.8 13.0 + - - +
276B ALA* 3.2 11.9 - - - +
278B GLN* 1.3 74.2 + - - +
280B LEU* 1.3 57.9 + - - +
282B ILE* 3.4 3.3 + - - +
283B ALA* 3.0 30.3 + - - +
352B ALA* 3.6 28.9 - - + +
353B SER* 3.9 3.8 - - - +
356B ALA* 3.5 9.6 - - + +
388B THR* 4.0 24.5 - - - +
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Residues in contact with LEU 280 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99B ALA* 5.7 1.1 - - + +
103B GLU* 3.7 26.0 - - + +
276B ALA 2.9 16.4 + - - +
277B SER* 3.2 11.6 + - - +
279B ALA* 1.3 75.6 - - - +
281B GLY* 1.3 57.6 + - - +
283B ALA* 4.3 0.4 - - + -
284B GLN* 2.8 30.8 + - - +
321B LEU* 3.6 21.9 - - + +
324B ALA* 3.7 19.5 - - + +
325B ARG* 3.6 45.3 - - + +
328B THR* 3.9 20.6 - - + +
329B TRP* 5.2 2.2 - - - +
352B ALA* 3.9 9.2 - - + +
355B ALA* 6.3 0.2 - - + -
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Residues in contact with GLY 281 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103B GLU* 3.4 30.7 - - - +
107B ARG* 3.4 23.2 - - - +
277B SER 3.1 11.1 + - - -
278B GLN 3.1 4.0 + - - -
280B LEU* 1.3 73.5 - - - +
282B ILE* 1.3 59.3 + - - +
284B GLN* 3.4 1.4 + - - +
285B THR* 3.0 25.1 + - - -
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Residues in contact with ILE 282 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106B SER 4.3 5.5 + - - +
110B ALA* 4.0 27.4 - - + -
278B GLN* 3.2 21.9 + - + +
279B ALA* 3.7 7.2 - - - +
280B LEU 3.4 0.2 - - - -
281B GLY* 1.3 74.2 - - - +
283B ALA* 1.3 58.5 + - - +
285B THR* 3.0 12.1 - - - +
286B ALA* 2.9 27.7 + - - +
356B ALA* 4.5 4.0 - - + +
360B SER* 5.2 0.7 - - - -
381B HIS* 3.6 34.8 - - + +
384B ASP* 3.9 25.4 - - + +
385B ALA* 3.9 13.5 - - + +
388B THR* 4.1 18.4 - - + -
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Residues in contact with ALA 283 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279B ALA 3.0 18.5 + - - +
280B LEU* 3.7 4.3 - - - +
282B ILE* 1.3 78.4 - - - +
284B GLN* 1.3 61.9 + - - +
286B ALA* 3.3 6.7 + - - +
287B LEU* 3.0 24.6 + - - +
321B LEU* 3.8 11.6 - - + +
352B ALA 5.2 1.1 - - - +
355B ALA* 5.3 0.9 - - + -
356B ALA* 3.9 18.4 - - - +
359B ILE* 3.6 30.0 - - + +
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Residues in contact with GLN 284 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46B ARG* 4.8 7.6 - - - +
103B GLU* 4.1 10.6 - - - +
107B ARG* 3.9 14.8 - - - +
280B LEU 2.8 22.1 + - - +
281B GLY* 3.7 6.3 - - - +
282B ILE 3.3 0.2 - - - -
283B ALA* 1.3 71.7 - - - +
285B THR* 1.3 58.5 + - - +
287B LEU* 3.2 7.5 + - - +
288B ASP* 2.8 61.4 + - - +
321B LEU* 3.3 18.1 - - + +
325B ARG* 2.8 28.1 + - - -
410D TYR* 3.6 9.7 + - - -
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Residues in contact with THR 285 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54B PHE* 3.9 15.6 - - - -
106B SER 5.1 1.3 - - - +
107B ARG* 3.5 29.5 + - - +
281B GLY 3.0 14.8 + - - +
282B ILE* 3.0 23.6 - - - +
284B GLN* 1.3 76.2 - - - +
286B ALA* 1.3 56.2 + - - +
288B ASP* 3.6 11.2 + - - +
289B CYS* 2.9 30.5 + - - +
381B HIS* 3.3 34.5 + - + +
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Residues in contact with ALA 286 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282B ILE 2.9 17.9 + - - +
283B ALA* 3.6 7.0 - - - +
284B GLN 3.2 0.2 - - - -
285B THR* 1.3 77.8 - - - +
287B LEU* 1.3 56.3 + - - +
289B CYS* 3.5 3.8 - - - +
290B ALA* 3.1 22.0 + - - +
359B ILE* 4.1 6.3 - - + -
360B SER* 4.1 27.1 - - - -
363B ALA* 3.5 16.3 - - + +
381B HIS* 3.8 22.4 - - + -
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Residues in contact with LEU 287 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
283B ALA 3.0 16.5 + - - +
284B GLN* 3.7 7.0 - - - +
286B ALA* 1.3 73.9 - - - +
288B ASP* 1.3 64.7 + - - +
290B ALA* 3.3 0.9 + - - +
291B VAL* 3.0 29.7 + - + +
314B LEU* 3.8 30.7 - - + +
317B MET* 3.9 26.5 - - + -
318B ALA* 4.1 29.2 - - + +
321B LEU* 4.3 17.7 - - + -
359B ILE* 4.0 8.4 - - + +
406D LEU* 4.5 8.5 - - + -
410D TYR* 3.9 15.0 - - - +
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Residues in contact with ASP 288 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
46B ARG* 4.9 0.8 + - - -
107B ARG* 2.9 40.8 + - - +
284B GLN* 2.8 33.3 + - - +
285B THR* 3.6 8.1 + - - +
287B LEU* 1.3 70.8 - - - +
289B CYS* 1.3 64.3 + - - +
291B VAL* 3.5 1.0 + - - +
292B ASN* 3.1 32.7 + - - +
410D TYR* 2.7 41.8 + - + -
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Residues in contact with CYS 289 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285B THR 2.9 18.1 + - - +
286B ALA* 3.5 9.6 - - - +
288B ASP* 1.3 78.4 - - - +
290B ALA* 1.3 62.5 + - - +
292B ASN* 3.4 4.4 + - - +
293B TYR* 3.1 24.3 + - - +
363B ALA* 5.5 0.7 - - - -
367B LEU* 4.0 27.6 - - - -
376B MET* 4.8 4.5 - - - -
377B PRO* 4.0 28.3 - - + -
378B ALA* 4.4 11.2 - - - -
381B HIS* 4.8 4.5 - - + +
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Residues in contact with ALA 290 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286B ALA 3.1 15.3 + - - +
287B LEU 3.3 4.7 + - - +
289B CYS* 1.3 78.3 - - - +
291B VAL* 1.3 57.0 + - - +
293B TYR* 3.4 1.6 + - - +
294B ALA* 2.9 32.2 + - - +
314B LEU* 4.2 4.7 - - + -
317B MET* 4.0 13.2 - - + -
363B ALA* 4.1 9.6 - - - +
366B ILE* 4.0 28.4 - - + +
367B LEU* 4.2 11.7 - - - -
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Residues in contact with VAL 291 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287B LEU* 3.0 29.1 + - + +
288B ASP 4.0 2.7 - - - +
290B ALA* 1.3 73.4 - - - +
292B ASN* 1.3 66.1 + - - +
294B ALA* 4.0 3.2 - - - +
295B GLU* 3.0 35.3 + - + +
314B LEU* 3.7 27.6 - - + -
406D LEU* 4.4 6.3 - - + -
407D LEU* 3.9 17.7 - - + -
410D TYR* 3.6 48.2 - - + -
----------------------------------------------------------
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Residues in contact with ASN 292 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288B ASP* 3.1 26.7 + - - +
289B CYS* 3.7 4.7 - - - +
291B VAL* 1.3 77.5 - - - +
293B TYR* 1.3 63.1 + - - +
295B GLU* 3.5 2.4 + - - +
296B ASN* 2.8 38.0 + - - +
410D TYR* 4.8 11.3 - - - -
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Residues in contact with TYR 293 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501A FAD 5.1 0.7 - - - -
289B CYS 3.1 14.1 + - - +
290B ALA 3.7 1.1 - - - +
292B ASN* 1.3 81.4 - - - +
294B ALA* 1.3 53.2 + - - +
296B ASN* 3.1 4.7 + - - -
297B ARG* 2.7 83.7 + - + +
304B LEU* 4.4 1.3 - - + -
366B ILE* 4.1 8.3 - - + -
367B LEU* 3.6 51.0 + - + -
370B MET* 3.7 24.6 - - + +
376B MET* 3.5 29.6 - - + -
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Residues in contact with ALA 294 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290B ALA 2.9 18.5 + - - +
291B VAL* 4.1 1.8 - - - +
293B TYR* 1.3 77.0 - - - +
295B GLU* 1.3 60.5 + - - +
296B ASN 3.2 0.4 + - - -
297B ARG 3.8 1.7 - - - +
303B PRO* 3.8 0.2 - - - +
304B LEU* 3.1 46.4 + - + +
305B THR* 3.2 23.4 + - + -
310B ILE* 4.2 7.0 - - + -
314B LEU* 4.9 2.2 - - + -
366B ILE* 3.8 17.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 295 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291B VAL* 3.0 35.5 + - + +
292B ASN* 3.8 7.4 - - - +
293B TYR 3.2 0.2 - - - -
294B ALA* 1.3 76.5 - - - +
296B ASN* 1.3 69.0 + - - +
303B PRO* 3.5 20.4 - - - +
305B THR* 2.8 33.5 + - + -
407D LEU* 4.2 11.6 - - - +
410D TYR* 5.1 2.7 - - + +
411D ARG* 3.0 46.1 + - - +
171G ARG* 4.1 5.0 - - - -
----------------------------------------------------------
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Residues in contact with ASN 296 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292B ASN* 2.8 34.2 + - - +
293B TYR* 3.1 4.1 + - + +
295B GLU* 1.3 87.4 - - - +
297B ARG* 1.3 61.5 + - - +
298B MET* 3.7 3.7 + - - +
171G ARG* 3.2 55.9 + - - +
172G ALA 4.5 5.9 - - - +
173G GLU* 5.0 1.9 - - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A GLU 4.8 0.4 + - - -
157A PRO 2.9 26.3 + - - -
158A GLY* 3.5 29.1 + - - -
159A ASN* 3.7 3.4 - - - +
160A GLY 4.2 0.2 - - - +
185A TRP* 6.0 0.6 - - - +
501A FAD 2.8 47.6 + - - +
293B TYR* 2.7 53.7 + - + +
294B ALA 3.8 0.2 - - - +
296B ASN* 1.3 73.0 - - - +
298B MET* 1.3 71.2 + - - +
299B ALA* 5.6 0.2 - - - +
303B PRO* 3.3 4.0 - - - +
304B LEU* 3.0 50.7 + - + -
370B MET* 6.2 0.4 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il