Contacts of the helix formed by residues 259 - 297 (chain C) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130C PHE* 3.6 35.2 - - + -
255C GLY* 4.0 6.1 - - - -
256C GLU* 3.0 50.7 + - + +
257C PRO 3.3 1.4 + - - +
258C GLY* 1.3 75.3 - - - +
260C GLY* 1.3 57.2 + - - +
261C PHE 3.4 1.1 - - - -
262C LYS* 3.3 16.9 + - + +
263C ILE* 2.9 42.3 + - + +
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Residues in contact with GLY 260 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198C PHE* 3.4 14.5 - - - -
210C ILE* 2.8 25.9 + - - -
211C SER* 3.8 17.0 - - - +
212C ALA 3.9 3.5 - - - +
258C GLY 3.1 0.2 - - - -
259C MET* 1.3 78.6 - - - +
261C PHE* 1.3 50.5 + - - +
263C ILE* 3.1 5.8 + - - -
264C ALA* 2.7 33.1 + - - +
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Residues in contact with PHE 261 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154C LEU* 6.2 1.6 - - + -
163C ALA* 4.1 4.5 - - + -
164C GLY* 3.7 35.7 - - - -
210C ILE* 4.0 24.4 + - + +
258C GLY 4.3 4.1 + - - +
259C MET 3.4 0.6 - - - -
260C GLY* 1.3 75.0 - - - +
262C LYS* 1.3 59.5 + - - +
264C ALA* 3.5 5.7 + - + +
265C MET* 3.0 67.7 + - + +
502C COS 6.1 0.4 - - - -
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Residues in contact with LYS 262 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130C PHE* 5.2 6.3 - - + -
258C GLY 5.2 0.8 + - - +
259C MET* 3.3 18.0 + - + +
260C GLY 3.2 0.6 - - - -
261C PHE* 1.3 78.5 - - - +
263C ILE* 1.3 61.4 + - + +
265C MET* 4.1 4.8 - - - +
266C GLN* 3.0 56.2 + - + +
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Residues in contact with ILE 263 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126C PRO* 4.1 14.8 - - + -
130C PHE* 3.7 46.3 - - + -
198C PHE* 3.9 18.6 - - + -
212C ALA* 4.0 14.1 - - + +
254C LEU* 3.4 32.1 - - + +
259C MET* 2.9 40.0 + - + +
260C GLY* 3.5 7.0 - - - +
262C LYS* 1.3 75.4 - - - +
264C ALA* 1.3 63.9 + - - +
266C GLN* 4.0 0.9 - - - +
267C THR* 2.9 29.6 + - - -
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Residues in contact with ALA 264 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152C PHE* 4.3 3.4 - - - -
154C LEU* 3.9 30.5 - - + -
198C PHE* 3.6 23.9 - - + -
260C GLY 2.7 19.7 + - - +
261C PHE* 3.6 7.2 - - + +
263C ILE* 1.3 72.5 - - - +
265C MET* 1.3 65.0 + - + +
267C THR* 3.4 2.4 + - - -
268C LEU* 3.1 33.3 + - - +
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Residues in contact with MET 265 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C LEU* 4.4 0.2 - - + -
163C ALA* 3.9 19.3 - - + -
261C PHE* 3.0 62.0 + - + +
262C LYS* 4.1 4.9 - - - +
263C ILE 3.3 0.2 - - - -
264C ALA* 1.3 84.2 - - + +
266C GLN* 1.3 67.2 + - + +
267C THR 3.4 0.2 + - - -
268C LEU* 3.4 23.8 + - + +
269C ASP* 3.2 27.9 + - - +
272C ARG* 5.6 2.4 + - - -
502C COS 4.3 16.6 - - - -
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Residues in contact with GLN 266 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129C LYS* 2.2 43.1 + - - +
130C PHE* 3.2 14.9 - - + -
262C LYS* 3.0 38.3 + - + +
263C ILE 4.1 2.2 - - - +
265C MET* 1.3 75.9 - - + +
267C THR* 1.3 65.9 + - - +
269C ASP* 3.5 26.9 + - - +
270C MET* 3.5 15.0 + - - +
341C PHE* 5.2 0.5 - - - -
342C ILE* 6.5 0.4 - - + -
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Residues in contact with THR 267 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121C SER 3.3 25.1 - - - +
122C LEU* 3.7 17.4 - - + +
126C PRO* 3.3 32.1 - - + +
130C PHE* 4.5 2.1 - - - -
152C PHE* 3.7 20.1 - - + -
263C ILE* 2.9 22.9 + - - +
264C ALA 3.9 3.4 - - - -
265C MET 3.2 0.2 - - - -
266C GLN* 1.3 77.6 - - - +
268C LEU* 1.3 59.1 + - - +
270C MET* 3.1 14.9 + - + +
271C GLY* 2.9 24.1 + - - -
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Residues in contact with LEU 268 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122C LEU* 4.7 3.1 - - + -
152C PHE* 4.4 11.4 - - + -
154C LEU* 3.9 18.4 - - + -
264C ALA 3.1 20.7 + - - +
265C MET* 3.7 19.3 - - + +
267C THR* 1.3 74.4 - - - +
269C ASP* 1.3 58.8 + - - +
271C GLY* 3.7 2.0 - - - +
272C ARG* 2.8 49.6 + - - +
392C GLU* 4.0 24.1 - - + +
502C COS 3.3 56.3 - - - +
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Residues in contact with ASP 269 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265C MET 3.2 19.2 + - - +
266C GLN* 3.5 20.5 - - - +
267C THR 3.3 0.4 - - - -
268C LEU* 1.3 75.7 - - - +
270C MET* 1.3 62.1 + - - +
272C ARG* 3.5 19.7 + - - +
273C ILE* 3.8 2.9 + - - +
341C PHE* 3.5 25.2 - - + -
342C ILE* 3.5 45.9 - - - +
345C ALA* 3.4 23.2 - - + +
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Residues in contact with MET 270 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95C TYR* 3.7 23.9 - - + +
121C SER* 3.6 11.9 + - - +
125C GLY* 4.0 34.8 - - - +
126C PRO* 4.2 0.9 - - + -
129C LYS* 4.7 19.1 - - + +
130C PHE* 5.7 0.9 - - + -
266C GLN 3.5 9.4 + - - +
267C THR* 3.1 32.6 + - - +
269C ASP* 1.3 75.2 - - - +
271C GLY* 1.3 66.1 + - - +
273C ILE* 3.1 20.9 + - - +
274C GLY 3.5 3.1 + - - -
335C LYS* 3.7 33.0 - - + -
341C PHE* 4.1 11.0 - - + -
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Residues in contact with GLY 271 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117C SER* 4.3 0.7 + - - -
121C SER* 3.5 21.0 - - - -
122C LEU* 3.9 4.9 - - - -
267C THR 2.9 13.9 + - - -
268C LEU 3.8 1.1 - - - -
270C MET* 1.3 76.5 - - - +
272C ARG* 1.3 58.0 + - - +
274C GLY* 3.0 5.2 + - - -
275C ILE* 2.9 26.3 + - - +
392C GLU* 2.9 24.0 - - - +
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Residues in contact with ARG 272 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265C MET* 5.6 2.8 + - - -
268C LEU* 2.8 34.6 + - - +
269C ASP* 3.6 25.2 + - - +
270C MET 3.1 0.2 - - - -
271C GLY* 1.3 76.6 - - - +
273C ILE* 1.3 57.8 + - - +
275C ILE* 4.5 1.3 - - - +
276C ALA* 2.9 28.6 + - - +
342C ILE 5.4 0.8 + - - -
345C ALA* 4.0 15.2 - - + +
346C ALA* 4.7 7.4 - - - +
349C LYS* 3.6 23.5 - - + +
392C GLU* 2.9 28.1 + - + +
397C ILE* 3.9 16.6 - - - +
398C GLN* 3.3 21.8 + - - +
401C VAL* 4.2 22.6 - - - +
502C COS 2.8 31.5 + - - -
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Residues in contact with ILE 273 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95C TYR* 4.1 27.6 - - + +
98C TYR* 5.2 1.8 - - + -
99C ALA* 4.6 5.4 - - + -
269C ASP 3.8 11.7 - - - +
270C MET 3.1 7.2 + - - +
272C ARG* 1.3 75.4 - - - +
274C GLY* 1.3 59.8 + - - +
276C ALA* 3.3 7.9 + - - +
277C SER* 2.9 34.9 + - - +
328C THR* 4.2 16.8 - - + +
331C ALA* 3.7 35.2 - - + +
332C ALA* 4.0 14.4 - - + +
335C LYS* 4.4 2.9 - - + -
341C PHE* 4.1 20.2 - - + -
345C ALA* 4.0 11.2 - - + -
348C ALA* 5.7 0.9 - - + -
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Residues in contact with GLY 274 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98C TYR* 3.8 21.3 - - - -
102C MET* 3.5 13.4 - - - +
117C SER* 3.6 17.5 - - - -
270C MET 3.5 4.4 + - - -
271C GLY 3.0 8.0 + - - -
273C ILE* 1.3 79.3 - - - +
275C ILE* 1.3 56.1 + - - +
277C SER* 3.3 6.9 + - - -
278C GLN 3.0 21.8 + - - -
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Residues in contact with ILE 275 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114C VAL* 4.6 9.0 - - + -
117C SER* 4.2 11.9 - - - +
118C VAL* 6.4 0.2 - - + -
271C GLY 2.9 9.0 + - - +
272C ARG 4.0 4.3 - - - +
274C GLY* 1.3 73.0 - - - +
276C ALA* 1.3 65.4 + - - +
278C GLN* 3.2 11.5 + - - +
279C ALA* 2.9 23.0 + - - +
349C LYS* 3.9 25.6 - - + -
353C SER* 5.9 0.2 - - - -
388C THR* 4.4 11.0 - - - -
391C TYR* 3.6 41.7 - - + +
392C GLU* 3.1 40.4 - - + +
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Residues in contact with ALA 276 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272C ARG 2.9 19.1 + - - +
273C ILE* 3.5 7.4 - - - +
274C GLY 3.3 0.2 - - - -
275C ILE* 1.3 75.6 - - - +
277C SER* 1.3 55.9 + - - +
279C ALA* 3.3 1.4 + - - -
280C LEU* 2.9 33.3 + - - +
328C THR* 3.5 20.9 - - + +
348C ALA* 3.7 27.6 - - + +
349C LYS* 3.8 4.9 - - - +
352C ALA* 3.4 11.8 - - + +
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Residues in contact with SER 277 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99C ALA* 3.4 33.4 + - - +
102C MET* 3.4 26.5 - - - -
103C GLU* 3.4 14.0 - - - -
273C ILE 2.9 15.3 + - - -
274C GLY* 3.5 4.8 - - - -
275C ILE 3.2 0.2 - - - -
276C ALA* 1.3 73.4 - - - +
278C GLN* 1.3 65.8 + - - +
280C LEU* 3.3 11.9 + - - +
281C GLY 3.0 17.3 + - - -
328C THR* 3.6 5.7 - - - +
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Residues in contact with GLN 278 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102C MET* 3.7 8.0 - - + +
106C SER* 3.3 29.7 - - - +
110C ALA* 2.9 31.5 + - - +
114C VAL* 3.7 12.3 - - - +
233C ILE* 3.8 10.9 - - - +
274C GLY 3.0 14.5 + - - +
275C ILE* 3.6 14.8 - - + +
277C SER* 1.3 76.7 - - - +
279C ALA* 1.3 62.0 + - - +
281C GLY 3.1 2.3 + - - -
282C ILE* 3.0 33.6 + - + +
388C THR* 3.9 10.9 - - - +
391C TYR* 2.7 29.7 + - - -
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Residues in contact with ALA 279 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275C ILE 2.9 16.8 + - - +
276C ALA* 3.5 5.6 - - - +
278C GLN* 1.3 76.5 - - - +
280C LEU* 1.3 55.4 + - - +
282C ILE* 3.4 3.3 + - - -
283C ALA* 2.9 30.8 + - - +
352C ALA* 3.6 30.5 - - + +
353C SER* 3.9 9.0 - - - +
356C ALA* 3.6 10.8 - - + +
388C THR* 4.0 18.1 - - + +
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Residues in contact with LEU 280 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99C ALA 5.7 0.9 - - - +
103C GLU* 3.8 25.6 - - + +
276C ALA 2.9 18.4 + - - +
277C SER* 3.3 14.8 + - - +
279C ALA* 1.3 76.4 - - - +
281C GLY* 1.3 56.9 + - - +
283C ALA* 4.5 0.4 - - - -
284C GLN* 2.8 31.2 + - - +
321C LEU* 3.8 21.0 - - + +
324C ALA* 3.6 32.5 - - + +
325C ARG* 3.6 25.1 - - + +
328C THR* 3.7 24.0 - - + +
329C TRP* 5.3 2.0 - - - +
352C ALA* 3.8 8.3 - - + -
355C ALA* 6.3 0.2 - - + -
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Residues in contact with GLY 281 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103C GLU* 3.3 30.0 - - - +
106C SER* 4.2 0.4 - - - -
107C ARG* 3.4 25.1 - - - +
277C SER 3.0 11.3 + - - -
278C GLN 3.1 4.6 + - - -
280C LEU* 1.3 71.9 - - - +
282C ILE* 1.3 59.9 + - - +
284C GLN* 3.4 1.5 + - - -
285C THR* 3.0 25.3 + - - -
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Residues in contact with ILE 282 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106C SER 4.4 5.3 + - - +
110C ALA* 4.0 22.0 - - + -
278C GLN* 3.0 25.0 + - + +
279C ALA* 3.4 6.7 + - - +
281C GLY* 1.3 76.1 - - - +
283C ALA* 1.3 58.6 + - - +
285C THR* 3.2 11.0 - - - +
286C ALA* 3.0 27.7 + - - +
356C ALA* 4.4 4.3 - - + +
360C SER* 5.1 0.7 - - - -
381C HIS* 3.8 32.5 - - + +
384C ASP* 4.0 30.5 - - + +
385C ALA* 3.8 16.8 - - + +
388C THR* 4.2 15.0 - - + -
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Residues in contact with ALA 283 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279C ALA 2.9 17.7 + - - +
280C LEU* 4.5 0.7 - - + -
282C ILE* 1.3 74.8 - - - +
284C GLN* 1.3 65.0 + - - +
286C ALA* 3.3 2.4 + - - -
287C LEU* 3.0 25.1 + - - +
321C LEU* 3.9 16.2 - - + -
352C ALA 5.3 0.2 - - - +
355C ALA* 5.1 1.3 - - + -
356C ALA* 3.8 19.2 - - - +
359C ILE* 3.6 34.6 - - + +
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Residues in contact with GLN 284 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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410A TYR* 3.5 10.9 + - - -
46C ARG* 5.3 5.2 - - - +
103C GLU* 4.2 10.8 - - - +
107C ARG* 3.9 25.1 - - - +
280C LEU 2.8 23.6 + - - +
281C GLY* 3.4 5.1 + - - +
283C ALA* 1.3 72.4 - - - +
285C THR* 1.3 57.9 + - - +
287C LEU* 3.4 5.1 + - - +
288C ASP* 2.9 56.5 + - - +
321C LEU* 3.6 17.6 - - + +
325C ARG* 3.0 25.5 + - - +
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Residues in contact with THR 285 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54C PHE* 3.8 16.1 - - - -
106C SER 5.1 1.1 - - - +
107C ARG* 3.3 31.8 + - - +
281C GLY 3.0 14.3 + - - +
282C ILE* 3.2 15.9 - - - +
284C GLN* 1.3 74.0 - - - +
286C ALA* 1.3 63.0 + - - +
288C ASP* 3.3 11.7 + - - +
289C CYS* 3.0 28.9 + - - +
381C HIS* 3.3 32.7 + - + +
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Residues in contact with ALA 286 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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282C ILE 3.0 19.5 + - - +
283C ALA* 3.3 4.9 + - - +
285C THR* 1.3 76.1 - - - +
287C LEU* 1.3 56.2 + - - +
289C CYS* 3.4 4.9 + - - +
290C ALA* 3.0 22.9 + - - +
359C ILE* 4.1 6.5 - - + -
360C SER* 4.0 28.0 - - - -
363C ALA* 3.5 17.1 - - + +
381C HIS* 3.8 22.2 - - + -
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Residues in contact with LEU 287 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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406A LEU* 4.6 8.7 - - + -
410A TYR* 3.8 15.3 - - - +
283C ALA 3.0 16.6 + - - +
284C GLN* 3.7 7.9 - - - +
286C ALA* 1.3 74.2 - - - +
288C ASP* 1.3 64.7 + - - +
290C ALA* 3.2 1.4 + - - -
291C VAL* 3.0 28.6 + - + +
314C LEU* 3.9 21.5 - - + +
317C MET* 3.8 33.2 - - + -
318C ALA* 4.0 27.4 - - + +
321C LEU* 4.0 20.9 - - + -
359C ILE* 4.0 7.3 - - + +
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Residues in contact with ASP 288 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410A TYR* 2.7 42.2 + - + -
107C ARG* 3.1 38.0 + - - -
284C GLN* 2.9 32.2 + - - +
285C THR* 3.5 10.9 + - - +
287C LEU* 1.3 73.7 - - - +
289C CYS* 1.3 61.5 + - - +
291C VAL* 3.5 1.4 + - - +
292C ASN* 3.3 25.8 + - - +
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Residues in contact with CYS 289 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285C THR 3.0 14.1 + - - +
286C ALA* 3.4 12.8 - - - +
288C ASP* 1.3 79.0 - - - +
290C ALA* 1.3 63.0 + - - +
292C ASN* 4.1 3.5 - - - +
293C TYR* 3.1 24.6 + - - +
363C ALA* 5.4 0.9 - - - -
367C LEU* 4.0 27.8 - - - -
376C MET* 4.4 7.0 - - - +
377C PRO* 4.2 28.5 - - + -
378C ALA* 4.4 10.3 - - - -
381C HIS* 4.8 2.9 - - + +
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Residues in contact with ALA 290 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286C ALA 3.0 16.3 + - - +
287C LEU 3.2 5.1 + - - +
289C CYS* 1.3 78.3 - - - +
291C VAL* 1.3 56.0 + - - +
293C TYR* 3.4 1.6 + - - +
294C ALA* 2.9 34.3 + - - +
314C LEU* 4.1 4.7 - - + -
317C MET* 4.0 20.6 - - + -
363C ALA* 4.0 11.0 - - - -
366C ILE* 3.9 20.7 - - + +
367C LEU* 4.2 10.3 - - - -
----------------------------------------------------------
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Residues in contact with VAL 291 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406A LEU* 4.6 5.8 - - + -
407A LEU* 4.2 14.6 - - + -
410A TYR* 3.4 54.1 - - + -
287C LEU* 3.0 27.1 + - + +
288C ASP 4.0 3.6 - - - +
289C CYS 3.3 0.2 - - - -
290C ALA* 1.3 74.9 - - - +
292C ASN* 1.3 59.4 + - - +
294C ALA* 3.9 2.7 - - - +
295C GLU* 3.0 40.1 + - + +
305C THR* 4.6 0.2 - - - +
314C LEU* 3.9 28.3 - - + -
----------------------------------------------------------
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Residues in contact with ASN 292 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410A TYR* 5.4 7.1 - - - +
288C ASP 3.3 15.2 + - - +
289C CYS* 4.1 3.4 - - - +
291C VAL* 1.3 77.6 - - - +
293C TYR* 1.3 67.4 + - - +
295C GLU* 3.5 3.5 + - - -
296C ASN* 2.7 43.5 + - - +
----------------------------------------------------------
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Residues in contact with TYR 293 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289C CYS 3.1 17.4 + - - +
290C ALA 3.7 1.3 - - - +
292C ASN* 1.3 79.3 - - - +
294C ALA* 1.3 60.1 + - - +
296C ASN* 3.0 7.1 + - + +
297C ARG* 2.9 75.8 + - + +
304C LEU* 4.6 0.4 - - + -
366C ILE 3.9 9.9 - - - -
367C LEU* 3.6 55.5 + - + -
370C MET* 3.5 29.3 - - + +
376C MET* 4.1 17.7 - - + -
501D FAD 4.9 1.3 + - - -
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Residues in contact with ALA 294 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290C ALA 2.9 21.7 + - - +
291C VAL* 4.0 1.6 - - - +
293C TYR* 1.3 73.4 - - - +
295C GLU* 1.3 61.3 + - - +
296C ASN 3.3 0.6 + - - -
297C ARG 3.7 2.0 - - - +
304C LEU* 3.1 47.4 + - + -
305C THR* 3.3 22.2 + - + -
310C ILE* 4.3 7.6 - - + -
314C LEU* 5.0 2.7 - - + -
366C ILE* 3.9 16.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 295 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407A LEU* 4.2 9.4 - - - +
410A TYR* 5.5 2.2 - - + +
411A ARG* 2.9 46.9 + - - +
291C VAL* 3.0 35.1 + - + +
292C ASN* 3.8 7.4 - - - +
293C TYR 3.2 0.4 - - - -
294C ALA* 1.3 76.7 - - - +
296C ASN* 1.3 66.7 + - - +
298C MET* 5.5 0.3 - - - +
303C PRO* 3.6 18.9 - - - +
305C THR* 2.5 36.9 + - + -
----------------------------------------------------------
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Residues in contact with ASN 296 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292C ASN* 2.7 40.7 + - - +
293C TYR* 3.0 4.5 + - - +
295C GLU* 1.3 86.8 - - - +
297C ARG* 1.3 59.8 + - - +
298C MET* 3.7 14.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293C TYR* 2.9 55.4 + - + +
294C ALA 3.7 0.3 - - - +
296C ASN* 1.3 75.5 - - - +
298C MET* 1.3 70.2 + - - +
303C PRO* 3.2 4.0 - - - +
304C LEU* 2.9 48.5 + - + +
370C MET* 6.2 0.6 - - - +
156D GLU 4.8 0.4 + - - -
157D PRO 2.9 29.3 + - - -
158D GLY* 3.6 26.6 + - - -
159D ASN* 3.7 2.4 - - - +
160D GLY 4.3 0.2 - - - +
185D TRP* 6.1 0.6 - - - +
501D FAD 2.9 43.4 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il