Contacts of the helix formed by residues 259 - 297 (chain E) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130E PHE* 3.7 35.9 - - + -
208E LYS* 5.9 4.0 - - - -
255E GLY* 4.1 4.9 - - - -
256E GLU* 3.1 52.8 + - + +
257E PRO 3.3 1.1 - - - +
258E GLY* 1.3 74.3 - - - +
260E GLY* 1.3 63.8 + - - +
261E PHE 3.4 1.1 - - - -
262E LYS* 3.3 12.5 + - + +
263E ILE* 3.0 35.2 + - + +
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Residues in contact with GLY 260 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198E PHE* 3.3 17.5 - - - -
210E ILE* 2.7 33.2 + - - -
211E SER* 3.8 16.6 - - - +
212E ALA* 4.0 3.6 - - - +
256E GLU 4.7 0.2 + - - -
258E GLY 3.2 0.4 - - - -
259E MET* 1.3 71.8 - - - +
261E PHE* 1.3 56.0 + - - +
263E ILE* 3.3 5.0 + - - +
264E ALA* 2.9 25.3 + - - +
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Residues in contact with PHE 261 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154E LEU* 5.9 2.0 - - + -
163E ALA* 4.3 5.4 - - + -
164E GLY* 3.7 36.6 - - - -
207E ASN 5.5 9.2 - - - +
208E LYS* 6.5 0.7 - - - -
209E SER 6.2 1.1 - - - +
210E ILE* 4.0 22.4 + - + +
258E GLY 4.7 2.6 + - - +
259E MET 3.4 0.4 - - - -
260E GLY* 1.3 74.0 - - - +
262E LYS* 1.3 61.8 + - + +
264E ALA* 3.3 6.7 + - + +
265E MET* 2.9 73.8 + - + +
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Residues in contact with LYS 262 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130E PHE* 5.2 1.3 - - + -
258E GLY 5.6 0.2 + - - -
259E MET* 3.3 11.5 + - + +
260E GLY 3.2 0.4 - - - -
261E PHE* 1.3 78.6 - - + +
263E ILE* 1.3 64.8 + - + +
265E MET* 3.4 6.3 + - - +
266E GLN* 3.1 35.9 + - + +
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Residues in contact with ILE 263 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126E PRO* 4.1 10.5 - - + -
130E PHE* 3.7 51.6 - - + -
198E PHE* 4.2 13.2 - - + -
212E ALA* 4.2 11.7 - - + -
254E LEU* 3.4 31.6 - - + +
259E MET* 3.0 38.1 + - + +
260E GLY* 3.3 7.4 + - - +
262E LYS* 1.3 76.1 - - + +
264E ALA* 1.3 54.9 + - - +
266E GLN* 3.5 1.9 + - - +
267E THR* 2.6 43.4 + - - +
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Residues in contact with ALA 264 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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152E PHE* 4.3 1.1 - - + -
154E LEU* 4.0 19.3 - - + -
198E PHE* 3.6 24.9 - - + -
260E GLY 2.9 17.3 + - - +
261E PHE* 3.4 7.6 - - - +
263E ILE* 1.3 77.8 - - - +
265E MET* 1.3 70.1 + - + +
267E THR* 3.4 5.0 + - - -
268E LEU* 3.0 34.0 + - - +
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Residues in contact with MET 265 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154E LEU* 4.1 8.7 - - + -
163E ALA* 4.2 8.1 - - + -
261E PHE* 2.9 61.0 + - + +
262E LYS* 3.9 6.1 - - - +
263E ILE 3.3 0.2 - - - -
264E ALA* 1.3 84.2 - - + +
266E GLN* 1.3 62.0 + - + +
268E LEU* 3.4 28.6 + - + +
269E ASP* 3.0 35.1 + - - +
272E ARG* 5.4 7.5 + - - -
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Residues in contact with GLN 266 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129E LYS* 2.7 39.2 + - + +
130E PHE* 3.2 17.9 - - + -
262E LYS* 3.1 21.5 + - - +
263E ILE 4.0 2.9 - - - +
265E MET* 1.3 76.7 - - + +
267E THR* 1.3 63.5 + - - +
269E ASP* 3.3 22.8 + - - +
270E MET* 3.4 19.5 + - - +
341E PHE* 5.4 0.7 - - - -
342E ILE* 6.5 0.4 - - + -
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Residues in contact with THR 267 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121E SER 3.4 21.9 - - - +
122E LEU* 3.6 15.6 - - + +
126E PRO* 3.4 33.7 - - + +
130E PHE* 5.1 1.4 - - - -
152E PHE* 3.6 19.7 - - + -
263E ILE* 2.6 25.1 + - - +
264E ALA* 3.6 5.5 - - - -
265E MET 3.3 0.2 - - - -
266E GLN* 1.3 75.6 - - - +
268E LEU* 1.3 59.9 + - - +
270E MET* 3.3 15.0 + - - +
271E GLY* 2.9 24.3 + - - -
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Residues in contact with LEU 268 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122E LEU* 4.4 6.3 - - + -
152E PHE* 4.3 18.8 - - + -
154E LEU* 3.8 16.8 - - + -
264E ALA 3.0 21.2 + - - +
265E MET* 3.7 28.9 - - + +
266E GLN 3.3 0.2 - - - -
267E THR* 1.3 76.0 - - - +
269E ASP* 1.3 59.0 + - - +
271E GLY* 3.6 2.0 - - - +
272E ARG* 2.8 58.0 + - - +
392E GLU* 4.1 39.7 - - + +
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Residues in contact with ASP 269 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265E MET* 3.0 25.6 + - - +
266E GLN* 3.4 20.7 - - - +
267E THR 3.2 0.4 - - - -
268E LEU* 1.3 77.7 - - - +
270E MET* 1.3 59.7 + - - +
272E ARG* 3.5 22.1 + - - +
273E ILE* 3.8 3.6 + - - +
341E PHE* 3.8 22.3 - - + -
342E ILE* 3.5 45.4 - - + +
345E ALA* 3.4 23.6 - - + +
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Residues in contact with MET 270 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83E ASP* 5.8 0.2 - - - +
95E TYR* 3.5 38.0 - - + +
121E SER* 3.6 6.9 + - - +
125E GLY* 4.1 33.2 - - - +
126E PRO* 4.4 1.1 - - + -
129E LYS* 4.5 18.4 - - + -
130E PHE* 6.2 0.4 - - + -
266E GLN 3.7 9.2 - - - +
267E THR* 3.3 24.8 + - - +
268E LEU 3.2 0.4 - - - -
269E ASP* 1.3 73.0 - - - +
271E GLY* 1.3 66.9 + - - +
273E ILE* 3.2 11.9 + - - +
274E GLY 3.5 3.5 + - - -
335E LYS* 3.6 37.5 - - + -
341E PHE* 4.1 11.7 - - + -
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Residues in contact with GLY 271 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117E SER* 4.4 1.2 + - - -
121E SER* 3.6 19.9 - - - -
122E LEU* 3.8 6.1 - - - -
267E THR 2.9 14.3 + - - -
268E LEU 3.2 2.8 + - - -
270E MET* 1.3 77.0 - - - +
272E ARG* 1.3 54.6 + - - +
274E GLY* 2.9 6.2 + - - -
275E ILE* 2.9 24.3 + - - +
392E GLU* 2.8 22.3 - - - +
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Residues in contact with ARG 272 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265E MET* 5.4 6.9 + - - -
268E LEU* 2.8 41.0 + - - +
269E ASP* 3.7 23.2 + - - +
270E MET 3.2 0.4 - - - -
271E GLY* 1.3 73.3 - - - +
273E ILE* 1.3 59.3 + - - +
275E ILE* 4.3 1.1 - - - +
276E ALA* 3.0 29.1 + - - +
342E ILE* 5.4 1.2 + - - +
345E ALA* 3.9 16.8 - - + +
346E ALA* 4.8 6.8 - - - +
349E LYS* 3.6 21.9 - - + +
392E GLU* 2.9 34.6 + - + +
393E GLY* 4.0 8.9 - - - -
397E ILE* 4.3 11.9 - - - +
398E GLN* 3.3 26.2 + - - +
401E VAL* 4.2 23.4 - - - +
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Residues in contact with ILE 273 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95E TYR* 3.9 28.0 - - + +
98E TYR* 5.2 1.6 - - + -
99E ALA* 4.5 7.4 - - + -
269E ASP 3.9 9.6 - - - +
270E MET 3.2 6.4 + - - +
272E ARG* 1.3 75.7 - - - +
274E GLY* 1.3 58.9 + - - +
276E ALA* 3.6 6.7 + - - +
277E SER* 2.8 33.7 + - - -
328E THR* 4.2 15.3 - - + +
331E ALA* 3.6 41.1 - - + +
332E ALA* 3.9 21.3 - - + +
335E LYS* 4.4 3.1 - - + -
341E PHE* 4.1 20.2 - - + -
345E ALA* 4.0 6.3 - - + +
348E ALA* 5.6 0.7 - - - -
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Residues in contact with GLY 274 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98E TYR* 3.7 19.8 - - - -
102E MET* 3.7 10.2 - - - +
117E SER* 3.5 19.1 - - - -
270E MET 3.5 4.2 + - - -
271E GLY 2.9 8.5 + - - -
273E ILE* 1.3 77.7 - - - +
275E ILE* 1.3 59.9 + - - +
277E SER* 3.3 7.1 + - - -
278E GLN 3.0 22.3 + - - -
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Residues in contact with ILE 275 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114E VAL* 4.4 10.1 - - + -
117E SER* 4.2 12.8 - - - +
271E GLY 2.9 11.0 + - - +
272E ARG 4.2 3.6 - - - +
273E ILE 3.4 0.4 - - - -
274E GLY* 1.3 69.4 - - - +
276E ALA* 1.3 66.1 + - - +
278E GLN* 3.2 16.4 + - - +
279E ALA* 2.9 21.5 + - + +
349E LYS* 4.2 22.7 - - + -
353E SER* 5.8 0.2 - - - -
388E THR* 4.2 14.8 - - - -
391E TYR* 3.7 36.6 - - + +
392E GLU* 3.4 41.3 - - + +
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Residues in contact with ALA 276 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272E ARG 3.0 18.3 + - - +
273E ILE* 3.6 6.3 - - - +
275E ILE* 1.3 75.1 - - - +
277E SER* 1.3 58.1 + - - +
279E ALA* 3.3 2.7 + - - -
280E LEU* 2.8 32.5 + - - +
328E THR* 3.3 22.4 - - + +
348E ALA* 3.7 26.2 - - + +
349E LYS* 3.8 5.5 - - - +
352E ALA* 3.4 12.2 - - + +
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Residues in contact with SER 277 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99E ALA* 3.4 33.3 - - - +
102E MET* 3.5 25.6 - - - -
103E GLU* 3.5 13.8 - - - -
273E ILE 2.8 20.9 + - - -
274E GLY 3.6 1.8 - - - -
275E ILE 3.2 0.2 - - - -
276E ALA* 1.3 74.8 - - - +
278E GLN* 1.3 66.3 + - - +
280E LEU* 3.2 11.8 + - - +
281E GLY 3.1 17.0 + - - -
328E THR* 3.5 6.4 - - - +
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Residues in contact with GLN 278 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102E MET* 3.8 9.8 - - + +
106E SER* 3.3 31.6 - - - +
110E ALA* 3.0 28.0 + - - +
114E VAL* 3.7 12.0 - - - +
233E ILE* 3.9 13.9 - - - +
274E GLY 3.0 13.7 + - - +
275E ILE* 3.2 14.8 + - + +
277E SER* 1.3 75.7 - - - +
279E ALA* 1.3 55.9 + - - +
281E GLY 3.0 4.3 + - - -
282E ILE* 3.0 33.1 + - + +
387E ILE* 4.9 0.2 - - - +
388E THR* 3.5 20.3 - - - +
391E TYR* 2.7 30.3 + - - -
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Residues in contact with ALA 279 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275E ILE 2.9 13.1 + - - +
276E ALA* 3.4 9.2 - - - +
278E GLN* 1.3 73.1 - - - +
280E LEU* 1.3 59.0 + - - +
282E ILE* 3.3 3.3 + - - -
283E ALA* 2.9 31.1 + - - +
352E ALA* 3.5 31.6 - - + +
353E SER* 3.9 5.2 - - - +
356E ALA* 3.7 8.2 - - + +
388E THR* 3.9 23.1 - - + +
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Residues in contact with LEU 280 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99E ALA* 5.6 1.1 - - + +
103E GLU* 3.7 26.3 - - + +
276E ALA 2.8 21.8 + - - +
277E SER* 3.2 10.7 + - - +
279E ALA* 1.3 73.8 - - - +
281E GLY* 1.3 56.1 + - - +
283E ALA* 3.7 1.5 - - - +
284E GLN* 2.9 31.2 + - - +
321E LEU* 3.8 18.8 - - + +
324E ALA* 3.6 18.6 - - + +
325E ARG* 3.5 42.6 - - + +
328E THR* 3.7 27.8 - - + +
329E TRP* 5.1 2.2 - - - +
352E ALA* 4.0 5.6 - - + -
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Residues in contact with GLY 281 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103E GLU* 3.3 29.8 - - - +
106E SER* 4.1 0.4 - - - -
107E ARG* 3.3 23.8 - - - +
277E SER 3.1 7.4 + - - -
278E GLN 3.0 8.4 + - - -
280E LEU* 1.3 75.9 - - - +
282E ILE* 1.3 62.9 + - - +
284E GLN* 3.9 1.3 - - - +
285E THR* 3.1 19.1 + - - +
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Residues in contact with ILE 282 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106E SER 4.4 5.6 - - - +
110E ALA* 3.8 30.5 - - + -
278E GLN* 3.0 29.8 + - + +
279E ALA* 3.7 6.5 - - - +
281E GLY* 1.3 75.4 - - - +
283E ALA* 1.3 64.1 + - - +
285E THR* 3.2 9.9 - - - +
286E ALA* 3.1 22.3 + - - +
356E ALA* 4.5 3.4 - - + +
360E SER* 5.2 1.1 - - - -
381E HIS* 3.7 33.4 - - + +
384E ASP* 4.0 22.9 - - + +
385E ALA* 4.0 15.9 - - + +
388E THR* 4.4 9.6 - - + -
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Residues in contact with ALA 283 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279E ALA 2.9 17.5 + - - +
280E LEU* 3.7 5.4 - - - +
282E ILE* 1.3 77.9 - - - +
284E GLN* 1.3 62.1 + - - +
286E ALA* 3.4 6.6 + - - +
287E LEU* 3.0 24.4 + - - +
321E LEU* 3.8 19.2 - - + +
352E ALA 5.4 0.2 - - - +
355E ALA* 5.3 1.6 - - + -
356E ALA* 4.0 18.3 - - - +
359E ILE* 3.6 22.8 - - + +
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Residues in contact with GLN 284 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103E GLU* 4.2 6.2 - - - +
107E ARG* 4.1 15.5 - - - +
280E LEU 2.9 21.7 + - - +
281E GLY* 3.9 6.1 - - - +
282E ILE 3.3 0.2 - - - -
283E ALA* 1.3 71.8 - - - +
285E THR* 1.3 57.3 + - - +
287E LEU* 3.3 7.1 + - - +
288E ASP* 2.9 60.6 + - - +
321E LEU* 3.3 18.8 - - + +
325E ARG* 2.8 31.1 + - - +
410G TYR* 3.6 10.3 + - - -
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Residues in contact with THR 285 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54E PHE* 4.2 14.2 - - - -
106E SER 5.1 2.0 - - - +
107E ARG* 3.2 31.2 + - - +
281E GLY 3.1 13.8 + - - +
282E ILE* 3.2 15.5 - - - +
284E GLN* 1.3 76.7 - - - +
286E ALA* 1.3 60.8 + - - +
288E ASP* 3.5 11.5 + - - +
289E CYS* 3.0 29.8 + - - +
381E HIS* 3.3 34.6 + - + +
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Residues in contact with ALA 286 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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282E ILE 3.1 19.0 + - - +
283E ALA* 3.6 5.4 - - - +
285E THR* 1.3 74.8 - - - +
287E LEU* 1.3 64.7 + - - +
289E CYS* 3.4 4.5 + - - +
290E ALA* 3.0 18.5 + - - +
359E ILE* 4.2 5.4 - - + -
360E SER* 4.1 28.3 - - - -
363E ALA* 3.5 16.8 - - + +
381E HIS* 3.8 22.2 - - + -
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Residues in contact with LEU 287 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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283E ALA 3.0 17.5 + - - +
284E GLN* 3.6 10.5 - - - +
286E ALA* 1.3 76.2 - - - +
288E ASP* 1.3 61.8 + - - +
290E ALA* 3.3 1.2 + - - +
291E VAL* 3.0 44.5 + - + +
314E LEU* 3.9 16.6 - - + -
317E MET* 4.0 24.9 - - + -
318E ALA* 4.0 26.7 - - + +
321E LEU* 3.9 23.1 - - + -
359E ILE* 4.0 7.2 - - + +
406G LEU* 4.4 13.9 - - + -
410G TYR* 3.9 11.2 - - - +
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Residues in contact with ASP 288 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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107E ARG* 3.1 38.5 + - - -
284E GLN* 2.9 33.5 + - - +
285E THR* 3.5 11.1 + - - +
286E ALA 3.3 0.2 - - - -
287E LEU* 1.3 73.1 - - - +
289E CYS* 1.3 62.6 + - - +
291E VAL* 3.9 1.4 - - - +
292E ASN* 3.1 27.0 + - - +
410G TYR* 2.7 42.9 + - + -
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Residues in contact with CYS 289 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285E THR 3.0 17.6 + - - +
286E ALA* 3.5 8.3 - - - +
288E ASP* 1.3 77.9 - - - +
290E ALA* 1.3 60.8 + - - +
292E ASN* 4.1 4.3 + - - +
293E TYR* 3.1 26.2 + - - +
363E ALA* 5.4 0.7 - - - -
367E LEU* 4.1 26.0 - - - -
376E MET* 4.4 6.8 - - - +
377E PRO* 4.0 29.6 - - + -
378E ALA* 4.3 11.7 - - - -
381E HIS* 4.8 2.7 - - + +
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Residues in contact with ALA 290 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286E ALA 3.0 14.0 + - - +
287E LEU 3.3 7.4 + - - +
289E CYS* 1.3 73.9 - - - +
291E VAL* 1.3 58.6 + - - +
293E TYR* 3.3 1.7 + - - +
294E ALA* 2.8 34.0 + - - +
314E LEU* 4.1 3.8 - - + -
317E MET* 4.0 14.4 - - + -
363E ALA* 4.0 9.6 - - - +
366E ILE* 3.8 29.9 - - + +
367E LEU* 4.2 11.9 - - - -
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Residues in contact with VAL 291 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287E LEU* 3.0 37.8 + - + +
288E ASP 3.9 3.6 - - - +
290E ALA* 1.3 77.6 - - - +
292E ASN* 1.3 58.5 + - - +
294E ALA* 3.7 5.1 - - - +
295E GLU* 2.9 40.4 + - + +
314E LEU* 3.8 16.6 - - + -
406G LEU* 4.6 6.1 - - + -
407G LEU* 4.0 17.7 - - + -
410G TYR* 3.6 48.5 - - + -
----------------------------------------------------------
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Residues in contact with ASN 292 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288E ASP 3.1 16.1 + - - +
289E CYS* 4.1 4.7 + - - +
291E VAL* 1.3 80.1 - - - +
293E TYR* 1.3 64.7 + - - +
295E GLU* 3.6 3.3 + - - -
296E ASN* 2.7 44.5 + - - +
410G TYR* 5.6 1.5 - - + -
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Residues in contact with TYR 293 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289E CYS 3.1 18.4 + - - +
290E ALA 3.7 0.7 - - - +
292E ASN* 1.3 85.0 - - - +
294E ALA* 1.3 58.9 + - - +
296E ASN* 3.0 6.0 + - + +
297E ARG* 2.9 79.1 + - + +
304E LEU* 4.4 1.8 - - + -
366E ILE* 3.9 9.4 - - + -
367E LEU* 3.5 51.6 + - + -
370E MET* 3.8 26.0 - - + +
376E MET* 4.0 22.9 - - + -
501F FAD 4.9 1.5 + - - -
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Residues in contact with ALA 294 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290E ALA 2.8 21.7 + - - +
291E VAL* 3.7 3.6 - - - +
293E TYR* 1.3 75.5 - - - +
295E GLU* 1.3 60.2 + - - +
296E ASN 3.4 0.5 + - - -
297E ARG 3.7 1.9 - - - +
303E PRO* 3.8 0.5 - - - +
304E LEU* 3.2 44.7 + - + +
305E THR* 3.3 24.4 + - + -
310E ILE* 4.3 7.4 - - + -
314E LEU* 4.6 2.5 - - + -
366E ILE* 4.1 13.5 - - + -
----------------------------------------------------------
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Residues in contact with GLU 295 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291E VAL* 2.9 31.7 + - + +
292E ASN* 3.9 7.4 - - - +
293E TYR 3.2 0.2 - - - -
294E ALA* 1.3 75.9 - - - +
296E ASN* 1.3 65.6 + - - +
298E MET* 4.8 1.9 - - - +
303E PRO* 3.5 20.8 - - - +
305E THR* 2.6 36.5 + - + -
407G LEU* 4.4 7.2 - - - +
410G TYR* 5.7 3.0 - - + +
411G ARG* 2.9 46.3 + - - +
----------------------------------------------------------
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Residues in contact with ASN 296 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292E ASN* 2.7 42.4 + - - +
293E TYR* 3.0 4.9 + - + +
295E GLU* 1.3 84.6 - - - +
297E ARG* 1.3 62.3 + - - +
298E MET* 3.7 17.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293E TYR* 2.9 51.0 + - + +
294E ALA 3.7 0.2 - - - +
295E GLU 3.7 0.2 - - - -
296E ASN* 1.3 78.2 - - - +
298E MET* 1.3 69.7 + - - +
303E PRO* 3.2 3.9 - - - +
304E LEU* 2.9 50.5 + - + +
370E MET* 6.1 0.2 - - - +
156F GLU 5.0 0.4 + - - -
157F PRO 2.9 28.7 + - - -
158F GLY* 3.7 15.2 + - - -
159F ASN* 3.7 12.5 - - - +
160F GLY 4.2 0.2 - - - +
501F FAD 2.8 45.1 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il