Contacts of the helix formed by residues 259 - 297 (chain F) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130F PHE* 3.8 33.7 - - + -
255F GLY* 3.9 7.4 - - - -
256F GLU* 3.0 49.8 + - + +
257F PRO 3.3 1.1 - - - +
258F GLY* 1.3 76.2 - - - +
260F GLY* 1.3 63.5 + - - +
261F PHE 3.3 1.6 + - - -
262F LYS* 3.4 17.6 + - + +
263F ILE* 3.0 35.9 + - + +
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Residues in contact with GLY 260 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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198F PHE* 3.4 12.6 - - - -
210F ILE* 2.6 37.5 + - - -
211F SER* 3.7 16.5 - - - +
212F ALA* 3.9 4.7 - - - +
256F GLU 4.6 0.4 + - - -
259F MET* 1.3 72.1 - - - +
261F PHE* 1.3 61.0 + - - +
263F ILE* 4.4 4.2 - - - +
264F ALA* 3.0 19.4 + - - +
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Residues in contact with PHE 261 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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154F LEU* 6.3 1.6 - - + -
163F ALA* 4.4 3.4 - - + -
164F GLY* 3.7 35.2 - - - -
210F ILE* 3.9 21.4 + - + +
258F GLY 4.4 4.3 + - - +
259F MET 3.3 1.2 + - - -
260F GLY* 1.3 75.5 - - - +
262F LYS* 1.3 64.7 + - + +
264F ALA* 3.2 6.2 + - + +
265F MET* 2.9 72.0 + - + +
502F COS 4.9 4.7 - - - -
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Residues in contact with LYS 262 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130F PHE* 6.1 0.4 - - + -
258F GLY 5.9 1.3 - - - +
259F MET* 3.4 18.7 + - + +
261F PHE* 1.3 79.4 - - + +
263F ILE* 1.3 61.3 + - + +
265F MET* 4.1 5.3 - - - +
266F GLN* 3.0 51.7 + - - +
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Residues in contact with ILE 263 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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126F PRO* 4.2 8.3 - - + -
130F PHE* 3.8 44.9 - - + -
196F VAL* 5.5 0.2 - - + -
198F PHE* 3.9 17.5 - - + -
212F ALA* 4.0 13.0 - - + -
254F LEU* 3.4 34.1 - - + +
259F MET* 3.0 40.6 + - + +
260F GLY* 3.8 4.5 - - - +
261F PHE 3.3 0.2 - - - -
262F LYS* 1.3 74.8 - - - +
264F ALA* 1.3 55.1 + - - +
266F GLN* 3.5 1.6 + - - +
267F THR* 2.6 43.0 + - - +
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Residues in contact with ALA 264 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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152F PHE* 4.5 1.7 - - - -
154F LEU* 3.9 26.7 - - + -
198F PHE* 3.6 24.7 - - + -
260F GLY 3.0 17.9 + - - +
261F PHE* 3.2 6.9 + - + +
263F ILE* 1.3 75.8 - - - +
265F MET* 1.3 66.8 + - + +
267F THR* 3.2 4.4 + - - -
268F LEU* 3.0 34.0 + - - +
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Residues in contact with MET 265 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154F LEU* 4.4 0.2 - - + -
163F ALA* 4.1 9.6 - - + -
261F PHE* 2.9 57.4 + - + +
262F LYS* 4.1 6.3 - - - +
264F ALA* 1.3 86.3 - - + +
266F GLN* 1.3 63.5 + - + +
268F LEU* 3.4 25.1 + - + +
269F ASP* 3.2 29.6 + - - +
272F ARG* 5.7 2.6 + - - -
502F COS 3.9 29.6 - - - +
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Residues in contact with GLN 266 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129F LYS* 2.6 40.7 + - - +
130F PHE* 3.6 20.5 - - + -
262F LYS* 3.0 38.1 + - - +
263F ILE 4.0 2.5 - - - +
265F MET* 1.3 75.0 - - + +
267F THR* 1.3 64.5 + - - +
269F ASP* 3.5 21.8 + - - +
270F MET* 3.6 19.6 + - - +
341F PHE* 5.4 0.7 - - - -
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Residues in contact with THR 267 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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121F SER 3.6 20.2 - - - +
122F LEU* 3.7 13.5 - - + +
126F PRO* 3.4 29.6 - - + +
130F PHE* 4.7 1.7 - - - -
152F PHE* 3.6 29.1 - - + -
263F ILE* 2.6 23.1 + - - +
264F ALA 3.2 5.1 + - - -
266F GLN* 1.3 76.9 - - - +
268F LEU* 1.3 57.7 + - - +
270F MET* 3.1 16.2 + - + +
271F GLY* 2.9 23.2 + - - -
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Residues in contact with LEU 268 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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122F LEU* 4.5 3.4 - - + -
152F PHE* 4.4 10.8 - - + -
154F LEU* 3.8 25.1 - - + -
264F ALA 3.0 20.6 + - - +
265F MET* 3.8 16.2 - - + +
266F GLN 3.4 0.2 - - - -
267F THR* 1.3 74.7 - - - +
269F ASP* 1.3 58.2 + - - +
271F GLY* 3.6 2.2 - - - +
272F ARG* 2.8 51.4 + - - +
392F GLU* 3.9 32.0 - - + +
502F COS 3.3 45.3 - - - +
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Residues in contact with ASP 269 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265F MET* 3.2 18.9 + - - +
266F GLN* 3.6 19.7 - - - +
267F THR 3.2 0.6 - - - -
268F LEU* 1.3 76.8 - - - +
270F MET* 1.3 63.3 + - - +
272F ARG* 3.5 18.1 + - - +
273F ILE* 3.7 2.8 + - - +
341F PHE* 3.8 24.4 - - + -
342F ILE* 3.6 44.8 - - + +
345F ALA* 3.4 26.6 - - + +
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Residues in contact with MET 270 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95F TYR* 3.5 24.1 - - + +
121F SER* 3.5 11.5 + - - +
125F GLY* 3.7 38.6 - - - +
126F PRO* 4.0 1.6 - - + -
129F LYS* 4.5 20.9 - - + -
266F GLN 3.7 16.8 - - - +
267F THR* 3.1 21.0 + - - +
269F ASP* 1.3 74.4 - - - +
271F GLY* 1.3 65.2 + - - +
273F ILE* 3.1 17.5 + - - +
274F GLY 3.5 6.8 + - - -
335F LYS* 3.7 33.9 - - + -
341F PHE* 4.3 9.2 - - + -
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Residues in contact with GLY 271 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117F SER* 4.4 0.9 + - - -
121F SER* 3.6 20.6 - - - -
122F LEU* 3.8 4.3 - - - -
267F THR 2.9 16.6 + - - -
268F LEU 3.3 1.5 + - - -
270F MET* 1.3 73.2 - - - +
272F ARG* 1.3 55.9 + - - +
274F GLY* 3.1 3.3 + - - -
275F ILE* 2.9 26.9 + - - +
392F GLU* 2.9 25.5 - - - +
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Residues in contact with ARG 272 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265F MET* 5.7 2.4 - - - -
268F LEU* 2.8 31.7 + - - +
269F ASP* 3.7 24.8 + - - +
270F MET 3.2 0.4 - - - -
271F GLY* 1.3 73.9 - - - +
273F ILE* 1.3 59.6 + - - +
275F ILE* 4.4 1.8 - - - +
276F ALA* 2.9 29.3 + - - +
342F ILE* 5.4 0.6 + - - +
345F ALA* 4.0 16.6 - - + +
346F ALA* 4.6 7.7 - - - +
349F LYS* 3.7 20.5 - - + +
392F GLU* 3.0 26.1 + - + +
397F ILE* 4.0 13.1 - - - +
398F GLN* 3.2 27.3 + - - +
401F VAL* 4.1 24.7 - - - +
502F COS 3.0 32.1 + - - -
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Residues in contact with ILE 273 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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95F TYR* 4.1 28.5 - - + -
98F TYR* 5.2 2.2 - - + -
99F ALA* 4.7 5.2 - - + -
269F ASP 3.9 6.5 - - - +
270F MET 3.1 8.1 + - - +
272F ARG* 1.3 77.1 - - - +
274F GLY* 1.3 61.3 + - - +
276F ALA* 3.3 7.2 - - - +
277F SER* 2.8 30.7 + - - +
328F THR* 4.2 14.1 - - + +
331F ALA* 3.8 31.9 - - + +
332F ALA* 4.1 17.9 - - + +
335F LYS* 4.5 1.6 - - + -
341F PHE* 3.7 36.1 - - + -
345F ALA* 4.0 7.0 - - + -
348F ALA* 5.8 0.7 - - - -
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Residues in contact with GLY 274 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98F TYR* 3.7 20.9 - - - -
102F MET* 3.7 7.1 - - - +
117F SER* 3.5 19.3 - - - -
270F MET 3.5 4.8 + - - -
271F GLY 3.1 8.0 + - - -
273F ILE* 1.3 75.8 - - - +
275F ILE* 1.3 58.5 + - - +
277F SER* 3.3 7.1 + - - -
278F GLN* 3.0 26.3 + - - +
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Residues in contact with ILE 275 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114F VAL* 4.5 10.3 - - + -
117F SER* 4.2 12.3 - - - +
271F GLY 2.9 9.0 + - - +
272F ARG* 4.1 3.8 - - - +
274F GLY* 1.3 71.8 - - - +
276F ALA* 1.3 60.2 + - - +
278F GLN* 3.2 11.3 + - + +
279F ALA* 2.9 29.3 + - - +
349F LYS* 4.1 25.8 - - + -
353F SER* 5.9 0.4 - - - -
388F THR* 4.2 10.8 - - - +
391F TYR* 3.6 42.0 - - + +
392F GLU* 3.2 43.1 - - + +
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Residues in contact with ALA 276 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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272F ARG 2.9 19.3 + - - +
273F ILE 3.3 7.4 - - - +
275F ILE* 1.3 74.4 - - - +
277F SER* 1.3 57.9 + - - +
279F ALA* 3.3 0.6 + - - -
280F LEU* 2.8 30.9 + - - +
328F THR* 3.5 24.7 - - + +
348F ALA* 3.9 22.2 - - + +
349F LYS* 4.3 5.0 - - - +
352F ALA* 3.3 14.8 - - + +
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Residues in contact with SER 277 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99F ALA* 3.5 33.7 - - - +
102F MET* 3.6 15.5 - - - -
103F GLU* 3.4 14.2 - - - -
273F ILE 2.8 17.1 + - - -
274F GLY* 3.3 2.3 + - - -
275F ILE 3.2 0.2 - - - -
276F ALA* 1.3 74.0 - - - +
278F GLN* 1.3 66.0 + - - +
280F LEU* 3.2 12.8 + - - +
281F GLY 3.0 17.2 + - - -
328F THR* 3.4 14.4 - - - +
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Residues in contact with GLN 278 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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102F MET* 3.9 8.6 - - + +
106F SER* 3.4 27.9 - - - +
110F ALA* 2.9 29.8 + - - +
114F VAL* 3.6 11.5 - - - +
233F ILE* 3.9 11.5 - - - +
274F GLY 3.0 14.9 + - - +
275F ILE* 3.4 13.2 - - + +
277F SER* 1.3 75.8 - - - +
279F ALA* 1.3 60.9 + - - +
281F GLY* 3.0 12.3 + - - -
282F ILE* 3.0 19.8 + - + +
388F THR* 3.5 19.9 - - - +
391F TYR* 2.6 32.6 + - - -
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Residues in contact with ALA 279 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275F ILE 2.9 15.6 + - - +
276F ALA* 3.4 9.2 - - - +
278F GLN* 1.3 72.6 - - - +
280F LEU* 1.3 57.2 + - - +
282F ILE* 3.3 5.1 + - - +
283F ALA* 2.9 30.9 + - - +
352F ALA* 3.5 31.6 - - + +
353F SER* 3.8 9.0 - - - +
356F ALA* 3.7 7.9 - - + +
388F THR* 4.0 17.9 - - + +
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Residues in contact with LEU 280 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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99F ALA* 5.7 0.9 - - + +
103F GLU* 3.6 26.1 - - - +
276F ALA 2.8 16.3 + - - +
277F SER* 3.5 17.7 - - - +
278F GLN 3.2 0.4 - - - -
279F ALA* 1.3 76.6 - - - +
281F GLY* 1.3 57.8 + - - +
283F ALA* 4.4 0.4 - - - -
284F GLN* 2.9 29.8 + - - +
321F LEU* 3.7 22.7 - - + +
324F ALA* 3.6 19.7 - - + +
325F ARG* 3.5 43.3 - - + +
328F THR* 3.8 18.8 - - + +
329F TRP* 4.9 2.7 - - - +
352F ALA* 4.0 7.2 - - + -
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Residues in contact with GLY 281 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103F GLU* 3.3 32.1 - - - -
106F SER* 4.2 0.4 - - - -
107F ARG* 3.4 24.1 - - - +
277F SER 3.0 10.2 + - - -
278F GLN 3.0 4.2 + - - -
280F LEU* 1.3 75.8 - - - +
282F ILE* 1.3 63.5 + - - +
284F GLN* 3.4 1.9 + - - +
285F THR* 3.2 17.5 + - - -
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Residues in contact with ILE 282 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106F SER 4.4 4.9 - - - +
110F ALA* 3.9 31.2 - - + -
278F GLN* 3.0 26.0 + - + +
279F ALA* 3.7 7.2 - - - +
281F GLY* 1.3 72.9 - - - +
283F ALA* 1.3 64.5 + - - +
285F THR* 3.3 9.9 - - - +
286F ALA* 3.1 22.3 + - - +
356F ALA* 4.6 3.8 - - + +
360F SER* 5.2 0.7 - - - -
381F HIS* 3.5 36.1 - - + +
384F ASP* 3.9 23.3 - - + +
385F ALA* 3.9 14.6 - - + +
388F THR* 4.2 14.6 - - + -
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Residues in contact with ALA 283 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279F ALA 2.9 18.3 + - - +
280F LEU* 3.8 4.5 - - - +
282F ILE* 1.3 73.1 - - - +
284F GLN* 1.3 65.3 + - - +
286F ALA* 3.4 1.7 + - - -
287F LEU* 3.0 21.1 + - - +
321F LEU* 3.9 13.6 - - + +
352F ALA 5.4 0.7 - - - +
355F ALA* 4.7 1.8 - - + -
356F ALA* 4.0 17.0 - - - +
359F ILE* 3.5 39.7 - - + +
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Residues in contact with GLN 284 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46F ARG* 5.8 2.0 - - - +
103F GLU* 4.3 10.3 - - - +
107F ARG* 3.9 16.4 - - - +
280F LEU 2.9 19.3 + - - +
281F GLY* 3.7 6.3 - - - +
282F ILE 3.3 0.4 - - - -
283F ALA* 1.3 77.2 - - - +
285F THR* 1.3 56.8 + - - +
287F LEU* 3.4 6.6 + - - +
288F ASP* 2.8 63.3 + - - +
321F LEU* 3.2 17.3 - - + +
325F ARG* 2.9 28.1 + - - -
410H TYR* 3.6 9.9 + - - -
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Residues in contact with THR 285 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54F PHE* 3.7 18.5 - - - -
106F SER 5.0 0.9 - - - +
107F ARG* 3.2 31.1 + - - +
281F GLY 3.2 12.3 + - - +
282F ILE* 3.3 16.8 - - - +
284F GLN* 1.3 79.0 - - - +
286F ALA* 1.3 60.6 + - - +
288F ASP* 3.3 12.0 + - - +
289F CYS* 2.9 28.4 + - - +
381F HIS* 3.3 34.0 + - + +
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Residues in contact with ALA 286 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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282F ILE 3.1 18.3 + - - +
283F ALA* 3.7 5.2 - - - +
285F THR* 1.3 74.8 - - - +
287F LEU* 1.3 58.4 + - - +
289F CYS* 3.4 4.5 - - - +
290F ALA* 3.1 22.3 + - - +
359F ILE* 4.1 6.1 - - + -
360F SER* 4.0 27.6 - - - -
363F ALA* 3.5 17.8 - - + +
381F HIS* 3.9 21.3 - - + -
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Residues in contact with LEU 287 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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283F ALA 3.0 18.4 + - - +
284F GLN* 3.7 7.9 - - - +
286F ALA* 1.3 74.1 - - - +
288F ASP* 1.3 64.6 + - - +
290F ALA 3.3 0.5 + - - -
291F VAL* 3.0 35.2 + - + +
314F LEU* 3.9 27.1 - - + +
317F MET* 3.8 26.2 - - + -
318F ALA* 4.1 24.2 - - + +
321F LEU* 4.0 20.6 - - + -
359F ILE* 4.0 9.7 - - + +
406H LEU* 4.6 10.3 - - + -
410H TYR* 3.9 15.3 - - - +
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Residues in contact with ASP 288 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107F ARG* 3.0 40.3 + - - +
284F GLN* 2.8 36.4 + - - +
285F THR* 3.4 10.8 + - - +
287F LEU* 1.3 72.5 - - - +
289F CYS* 1.3 56.3 + - - +
291F VAL* 3.7 1.0 + - - +
292F ASN* 3.2 31.7 + - - +
410H TYR* 2.6 41.9 + - + -
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Residues in contact with CYS 289 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285F THR 2.9 17.1 + - - +
286F ALA* 3.4 10.3 - - - +
288F ASP* 1.3 75.2 - - - +
290F ALA* 1.3 65.8 + - - +
292F ASN* 4.3 3.2 - - - +
293F TYR* 3.1 25.1 + - - +
363F ALA* 5.4 0.7 - - - -
367F LEU* 3.9 28.0 - - - -
376F MET* 4.2 8.4 - - - +
377F PRO* 4.1 25.4 - - + -
378F ALA* 4.4 10.3 - - - -
381F HIS* 4.8 2.2 - - + -
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Residues in contact with ALA 290 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286F ALA 3.1 17.2 + - - +
287F LEU 3.3 3.3 + - - +
289F CYS* 1.3 75.1 - - - +
291F VAL* 1.3 57.7 + - - +
293F TYR* 3.3 1.9 + - - +
294F ALA* 2.8 33.8 + - - +
314F LEU* 4.1 3.6 - - + -
317F MET* 4.0 9.2 - - + -
363F ALA* 4.0 14.8 - - - +
366F ILE* 3.9 30.8 - - + +
367F LEU* 4.1 11.0 - - - -
----------------------------------------------------------
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Residues in contact with VAL 291 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287F LEU* 3.0 30.0 + - + +
288F ASP 4.0 2.7 - - - +
290F ALA* 1.3 75.2 - - - +
292F ASN* 1.3 66.0 + - - +
294F ALA* 3.2 5.3 + - - +
295F GLU* 2.9 34.5 + - + +
314F LEU* 3.9 25.6 - - + -
406H LEU* 4.7 6.3 - - + -
407H LEU* 4.0 15.7 - - + -
410H TYR* 3.5 51.4 - - + -
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Residues in contact with ASN 292 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288F ASP 3.2 15.9 + - - +
289F CYS* 4.3 2.7 - - - +
291F VAL* 1.3 83.0 - - - +
293F TYR* 1.3 62.9 + - - +
295F GLU* 3.6 3.6 + - - +
296F ASN* 2.9 44.0 + - - +
410H TYR* 6.0 2.7 - - + -
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Residues in contact with TYR 293 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
501E FAD 4.7 0.8 + - - -
289F CYS 3.1 20.1 + - - +
290F ALA 3.6 3.1 - - - +
291F VAL 3.1 0.2 - - - -
292F ASN* 1.3 80.4 - - - +
294F ALA* 1.3 58.1 + - - +
296F ASN* 3.3 3.5 + - - +
297F ARG* 2.9 72.6 + - + +
304F LEU* 4.2 2.2 - - + -
366F ILE* 4.0 9.9 - - + -
367F LEU* 3.7 56.9 + - + -
370F MET* 3.8 24.6 - - + +
376F MET* 4.2 16.4 - - + -
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Residues in contact with ALA 294 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290F ALA 2.8 21.8 + - - +
291F VAL* 3.8 3.4 - - - +
293F TYR* 1.3 71.6 - - - +
295F GLU* 1.3 64.3 + - - +
296F ASN 3.4 0.5 + - - -
297F ARG 3.8 2.1 - - - +
304F LEU* 3.3 45.7 + - + +
305F THR* 3.4 24.2 + - + -
310F ILE* 4.3 7.9 - - + -
314F LEU* 4.6 2.0 - - + -
366F ILE* 4.1 12.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 295 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291F VAL* 2.9 26.7 + - + +
292F ASN* 3.8 8.1 - - - +
293F TYR 3.3 0.2 - - - -
294F ALA* 1.3 78.1 - - - +
296F ASN* 1.3 65.1 + - - +
303F PRO* 3.8 17.7 - - - +
305F THR* 2.6 35.6 + - + +
407H LEU* 3.8 15.0 - - + +
410H TYR* 5.6 2.3 - - + +
411H ARG* 2.8 48.7 + - - +
----------------------------------------------------------
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Residues in contact with ASN 296 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292F ASN* 2.9 41.4 + - - +
293F TYR* 3.3 4.1 + - - +
295F GLU* 1.3 88.7 - - - +
297F ARG* 1.3 61.5 + - - +
298F MET* 3.6 11.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157E PRO 3.0 28.1 + - - -
158E GLY* 3.6 17.5 + - - -
159E ASN* 3.6 11.9 - - - +
160E GLY 4.1 0.2 - - - +
185E TRP* 6.0 0.8 - - - +
501E FAD 2.8 52.8 + - - +
293F TYR* 2.9 47.6 + - + +
294F ALA 3.9 0.2 + - - -
296F ASN* 1.3 77.0 - - - +
298F MET* 1.3 70.3 + - - +
303F PRO* 3.2 4.1 - - - +
304F LEU* 3.0 45.5 + - + +
370F MET* 6.3 0.4 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il