Contacts of the helix formed by residues 259 - 297 (chain G) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130G PHE* 3.8 33.4 - - + -
255G GLY* 3.9 5.6 - - - -
256G GLU* 3.1 53.3 + - + +
257G PRO 3.3 1.7 - - - +
258G GLY* 1.3 74.8 - - - +
260G GLY* 1.3 64.9 + - - +
261G PHE 3.1 3.8 + - - -
262G LYS* 3.1 12.9 + - + +
263G ILE* 2.9 36.4 + - + +
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Residues in contact with GLY 260 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198G PHE* 3.2 15.4 - - - -
210G ILE* 2.8 30.8 + - - -
211G SER* 3.8 16.5 - - - +
212G ALA* 3.8 4.2 - - - +
256G GLU 4.6 0.4 + - - -
259G MET* 1.3 77.5 - - - +
261G PHE* 1.3 54.8 + - - +
263G ILE* 4.3 4.2 - - - +
264G ALA* 3.0 24.8 + - - +
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Residues in contact with PHE 261 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154G LEU* 6.4 1.1 - - + -
163G ALA* 4.3 2.2 - - + -
164G GLY* 3.6 38.1 - - - -
207G ASN* 3.2 32.3 - - + +
210G ILE* 3.9 16.3 + - + +
258G GLY 4.5 2.6 + - - +
259G MET 3.1 1.0 + - - -
260G GLY* 1.3 75.3 - - - +
262G LYS* 1.3 60.7 + - + +
264G ALA* 3.2 6.7 + - + +
265G MET* 3.0 68.7 + - + +
502G COS 3.3 70.7 - + + -
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Residues in contact with LYS 262 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130G PHE* 5.1 0.4 - - + -
258G GLY 5.5 0.2 + - - -
259G MET* 3.1 14.0 + - + +
261G PHE* 1.3 78.5 - - + +
263G ILE* 1.3 64.3 + - + +
265G MET* 3.9 5.9 - - - +
266G GLN* 3.0 45.2 + - - +
502G COS 4.4 31.0 - - - +
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Residues in contact with ILE 263 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126G PRO* 4.2 9.0 - - + -
130G PHE* 3.8 46.0 - - + -
198G PHE* 4.0 16.4 - - + -
212G ALA* 4.0 12.8 - - + -
254G LEU* 3.4 32.1 - - + +
259G MET* 2.9 42.8 + - + +
260G GLY 3.8 5.2 - - - +
262G LYS* 1.3 75.6 - - - +
264G ALA* 1.3 56.5 + - - +
266G GLN* 3.9 1.4 - - - +
267G THR* 2.7 41.8 + - - +
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Residues in contact with ALA 264 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152G PHE* 4.3 1.4 - - - -
154G LEU* 4.0 26.2 - - + -
198G PHE* 3.6 25.4 - - + -
260G GLY 3.0 18.8 + - - +
261G PHE* 3.5 7.6 - - + +
263G ILE* 1.3 76.6 - - - +
265G MET* 1.3 64.2 + - + +
267G THR* 3.4 4.0 + - - -
268G LEU* 3.1 34.0 + - - +
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Residues in contact with MET 265 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154G LEU* 4.6 0.2 - - + -
163G ALA* 4.0 16.8 - - + -
261G PHE* 3.0 53.0 + - + +
262G LYS 3.9 3.1 - - - +
263G ILE 3.3 0.2 - - - -
264G ALA* 1.3 81.9 - - + +
266G GLN* 1.3 58.1 + - - +
268G LEU* 3.4 15.4 + - + +
269G ASP* 3.1 33.3 + - - +
272G ARG* 5.5 0.5 + - - -
502G COS 3.1 84.2 + - + +
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Residues in contact with GLN 266 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129G LYS* 3.0 34.3 + - - -
130G PHE* 3.5 17.8 - - + -
262G LYS* 3.0 33.6 + - - +
263G ILE 4.0 2.5 - - - +
265G MET* 1.3 75.3 - - - +
267G THR* 1.3 63.5 + - - +
269G ASP* 3.5 11.4 - - - +
270G MET* 3.5 27.9 + - - +
341G PHE* 5.2 0.5 - - - -
502G COS 3.5 30.6 - - - +
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Residues in contact with THR 267 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121G SER 3.4 21.4 - - - +
122G LEU* 3.6 12.0 - - + +
126G PRO* 3.4 29.1 - - + +
130G PHE* 4.8 1.4 - - - -
152G PHE* 3.6 27.4 - - + -
263G ILE* 2.7 23.8 + - - +
264G ALA* 3.6 5.3 - - - -
265G MET 3.3 0.2 - - - -
266G GLN* 1.3 76.8 - - - +
268G LEU* 1.3 58.4 - - - +
270G MET* 3.3 14.2 + - - +
271G GLY* 2.9 23.6 + - - -
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Residues in contact with LEU 268 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122G LEU* 4.4 3.6 - - + -
152G PHE* 4.2 9.9 - - + -
154G LEU* 3.9 22.7 - - + -
264G ALA 3.1 20.4 + - - +
265G MET* 3.7 22.2 - - + +
266G GLN 3.3 0.2 - - - -
267G THR* 1.3 74.5 - - - +
269G ASP* 1.3 56.4 + - - +
271G GLY 4.1 1.3 - - - +
272G ARG* 2.7 54.4 + - - +
392G GLU* 3.9 19.7 - - + +
502G COS 3.6 54.3 - - + +
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Residues in contact with ASP 269 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265G MET 3.1 17.2 + - - +
266G GLN* 3.5 16.0 - - - +
268G LEU* 1.3 77.8 - - - +
270G MET* 1.3 63.6 + - - +
272G ARG* 3.5 21.0 + - - +
273G ILE* 3.6 2.3 + - - +
341G PHE* 3.7 24.3 - - + -
342G ILE* 3.5 36.8 - - - +
345G ALA* 3.3 23.0 - - + +
502G COS 2.8 25.7 + - - -
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Residues in contact with MET 270 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95G TYR* 3.5 29.4 - - + +
121G SER* 3.6 7.1 + - - +
125G GLY* 4.1 34.1 - - - +
126G PRO* 4.3 1.6 - - + -
129G LYS* 4.4 19.7 - - + -
130G PHE* 5.9 0.2 - - + -
266G GLN 3.5 19.5 - - - +
267G THR* 3.3 18.5 + - - +
268G LEU 3.2 0.2 - - - -
269G ASP* 1.3 78.5 - - - +
271G GLY* 1.3 60.8 + - - +
273G ILE* 3.2 19.2 + - - +
274G GLY 3.6 3.1 + - - -
335G LYS* 3.7 37.0 - - + -
341G PHE* 4.0 11.7 - - + -
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Residues in contact with GLY 271 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117G SER* 4.4 0.9 + - - -
121G SER* 3.4 20.0 - - - -
122G LEU* 4.1 2.7 - - - -
267G THR 2.9 15.2 + - - -
268G LEU 3.2 1.7 + - - -
270G MET* 1.3 73.6 - - - +
272G ARG* 1.3 59.2 + - - +
274G GLY* 3.1 3.8 + - - -
275G ILE* 3.0 27.0 + - - +
392G GLU* 2.9 25.5 - - - +
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Residues in contact with ARG 272 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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265G MET* 5.5 0.6 + - - -
268G LEU* 2.7 35.1 + - - +
269G ASP* 3.5 25.5 + - - +
271G GLY* 1.3 74.6 - - - +
273G ILE* 1.3 59.4 + - - +
275G ILE* 4.5 1.3 - - - +
276G ALA* 2.9 29.3 + - - +
342G ILE* 5.2 0.8 + - - +
345G ALA* 4.1 16.3 - - + +
346G ALA* 4.8 8.3 - - - +
349G LYS* 3.8 22.3 - - + +
392G GLU* 3.0 25.6 + - + +
393G GLY* 4.0 5.3 - - - -
397G ILE* 4.2 5.6 - - - +
398G GLN* 3.7 21.3 + - - +
401G VAL* 4.2 21.8 - - - +
502G COS 3.2 45.3 + - - -
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Residues in contact with ILE 273 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95G TYR* 3.9 32.3 - - + -
98G TYR* 5.1 1.8 - - + -
99G ALA* 4.6 5.4 - - + -
269G ASP 3.6 7.8 + - - +
270G MET 3.2 7.7 + - - +
272G ARG* 1.3 75.9 - - - +
274G GLY* 1.3 55.2 + - - +
276G ALA* 3.2 8.5 - - - +
277G SER* 2.9 35.1 + - - +
328G THR* 4.0 15.2 - - + +
331G ALA* 3.9 31.0 - - + +
332G ALA* 4.0 17.7 - - + +
335G LYS* 4.2 3.1 - - + -
341G PHE* 3.6 32.1 - - + -
345G ALA* 4.1 5.4 - - + +
348G ALA* 5.8 0.9 - - - -
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Residues in contact with GLY 274 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98G TYR* 3.7 20.5 - - - -
102G MET* 3.8 6.3 - - - +
117G SER* 3.5 19.5 - - - -
270G MET 3.6 4.6 + - - -
271G GLY 3.1 7.6 + - - -
273G ILE* 1.3 75.8 - - - +
275G ILE* 1.3 59.3 + - - +
277G SER* 3.2 7.4 + - - -
278G GLN* 2.8 28.1 + - - +
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Residues in contact with ILE 275 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114G VAL* 4.5 7.2 - - + -
117G SER* 4.1 16.2 - - - +
118G VAL* 6.3 0.2 - - + -
271G GLY 3.0 9.5 + - - +
272G ARG* 4.1 4.0 - - - +
274G GLY* 1.3 71.9 - - - +
276G ALA* 1.3 60.0 + - - +
278G GLN* 3.2 15.4 + - + +
279G ALA* 2.9 29.3 + - - +
349G LYS* 3.8 28.0 - - + -
353G SER* 5.8 0.4 - - - -
388G THR* 4.3 10.3 - - - -
391G TYR* 3.7 37.5 - - + +
392G GLU* 3.3 41.7 - - + +
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Residues in contact with ALA 276 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272G ARG 2.9 15.8 + - - +
273G ILE* 3.2 11.4 - - - +
275G ILE* 1.3 76.9 - - - +
277G SER* 1.3 61.9 + - - +
279G ALA* 3.3 0.7 + - - -
280G LEU* 3.0 28.2 + - - +
328G THR* 3.5 24.0 - - + +
348G ALA* 4.0 23.1 - - + +
349G LYS* 4.0 5.0 - - - +
352G ALA* 3.6 12.8 - - + +
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Residues in contact with SER 277 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99G ALA* 3.4 34.4 + - - +
102G MET* 3.3 26.9 - - - -
103G GLU* 3.4 13.3 - - - -
273G ILE 2.9 15.5 + - - -
274G GLY* 3.2 4.6 + - - -
276G ALA* 1.3 71.5 - - - +
278G GLN* 1.3 66.4 + - - +
280G LEU* 3.4 11.4 + - - +
281G GLY 3.1 16.8 + - - -
328G THR* 3.6 5.5 - - - +
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Residues in contact with GLN 278 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102G MET* 3.7 8.4 - - + +
106G SER* 3.4 29.1 - - - +
110G ALA* 2.9 29.7 + - - +
113G GLY 5.2 0.2 - - - -
114G VAL* 3.6 13.6 - - - +
233G ILE* 3.9 10.7 - - - +
274G GLY 2.8 14.6 + - - +
275G ILE* 3.6 13.2 - - + +
277G SER* 1.3 75.9 - - - +
279G ALA* 1.3 61.0 + - - +
281G GLY 3.1 2.4 + - - -
282G ILE* 3.1 28.3 + - + +
388G THR* 3.6 19.2 - - - +
391G TYR* 2.7 32.9 + - - -
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Residues in contact with ALA 279 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275G ILE 2.9 16.8 + - - +
276G ALA* 3.8 3.1 - - - +
278G GLN* 1.3 77.4 - - - +
280G LEU* 1.3 56.6 + - - +
282G ILE* 3.3 4.6 + - - +
283G ALA* 2.8 32.6 + - - +
352G ALA* 3.5 32.8 - - + +
353G SER* 3.7 4.5 - - - +
356G ALA* 3.6 6.8 - - + +
388G THR* 3.8 27.5 - - - +
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Residues in contact with LEU 280 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99G ALA 5.7 0.7 - - - +
103G GLU* 3.8 25.7 - - + +
276G ALA 3.0 18.3 + - - +
277G SER* 3.5 14.1 - - - +
279G ALA* 1.3 76.5 - - - +
281G GLY* 1.3 51.9 + - - +
283G ALA* 3.6 1.7 - - - +
284G GLN* 2.7 35.9 + - - +
321G LEU* 3.7 22.1 - - + +
324G ALA* 3.7 17.9 - - + -
325G ARG* 3.5 39.3 - - + +
328G THR* 3.7 24.9 - - + +
329G TRP* 5.1 2.7 - - - +
352G ALA* 4.1 6.1 - - + -
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Residues in contact with GLY 281 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103G GLU* 3.4 30.3 - - - -
106G SER 4.3 0.2 - - - -
107G ARG* 3.3 24.5 - - - +
277G SER 3.1 11.4 + - - -
278G GLN 3.1 3.8 + - - -
280G LEU* 1.3 72.7 - - - +
282G ILE* 1.3 64.5 + - - +
284G GLN* 3.7 1.7 - - - +
285G THR* 3.1 19.8 + - - +
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Residues in contact with ILE 282 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106G SER 4.5 4.9 - - - +
110G ALA* 3.9 27.1 - - + -
278G GLN* 3.1 26.4 + - + +
279G ALA* 3.6 6.7 - - - +
281G GLY* 1.3 73.1 - - - +
283G ALA* 1.3 66.2 + - - +
285G THR* 3.2 8.9 - - - +
286G ALA* 3.0 26.9 + - - +
356G ALA* 4.6 2.7 - - + +
360G SER* 5.3 0.7 - - - -
381G HIS* 3.6 34.1 - - + +
384G ASP* 3.7 27.1 - - + +
385G ALA* 3.9 15.9 - - + +
388G THR* 4.1 15.3 - - + -
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Residues in contact with ALA 283 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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279G ALA 2.8 20.9 + - - +
280G LEU* 3.7 4.7 - - + +
282G ILE* 1.3 75.2 - - - +
284G GLN* 1.3 56.6 + - - +
286G ALA* 3.4 6.8 + - - +
287G LEU* 2.9 28.8 + - - +
321G LEU* 3.8 12.6 - - + -
352G ALA 5.3 0.2 - - - +
355G ALA* 5.1 1.6 - - + -
356G ALA* 3.8 19.5 - - - +
359G ILE* 3.6 30.0 - - + +
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Residues in contact with GLN 284 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410E TYR* 3.6 10.1 + - - -
46G ARG* 5.8 3.8 - - - +
103G GLU* 4.1 10.8 - - - +
104G GLU* 6.1 0.2 - - - +
107G ARG* 4.0 15.9 - - - +
280G LEU 2.7 21.6 + - - +
281G GLY* 3.7 6.1 - - - +
282G ILE 3.3 0.2 - - - -
283G ALA* 1.3 73.2 - - - +
285G THR* 1.3 57.5 + - - +
287G LEU* 3.2 6.7 + - - +
288G ASP* 2.8 59.8 + - - +
321G LEU* 3.6 17.4 - - + +
325G ARG* 2.9 27.2 + - - -
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Residues in contact with THR 285 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54G PHE* 4.0 14.6 - - - -
106G SER 5.2 1.1 - - - +
107G ARG* 3.5 29.4 + - - +
281G GLY 3.1 12.9 + - - +
282G ILE* 3.2 15.9 - - - +
284G GLN* 1.3 73.4 - - - +
286G ALA* 1.3 65.0 + - - +
288G ASP* 3.5 11.9 + - - +
289G CYS* 2.9 31.7 + - - +
381G HIS* 3.3 34.8 + - + +
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Residues in contact with ALA 286 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282G ILE 3.0 19.8 + - - +
283G ALA* 3.5 6.1 - - - +
285G THR* 1.3 78.8 - - - +
287G LEU* 1.3 61.7 + - - +
289G CYS* 3.5 2.2 + - - +
290G ALA* 3.2 16.6 + - - +
359G ILE* 4.1 12.8 - - + -
360G SER* 4.2 20.0 - - - -
363G ALA* 3.5 18.0 - - + +
381G HIS* 3.9 22.2 - - + -
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Residues in contact with LEU 287 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406E LEU* 4.4 14.6 - - + -
410E TYR* 3.8 13.5 - - + +
283G ALA 2.9 13.8 + - - +
284G GLN* 3.2 11.9 + - - +
286G ALA* 1.3 73.5 - - - +
288G ASP* 1.3 65.0 + - - +
290G ALA* 3.2 1.6 + - - +
291G VAL* 3.0 43.1 + - + +
314G LEU* 4.0 13.9 - - + +
317G MET* 4.0 26.2 - - + -
318G ALA* 4.1 23.3 - - + +
321G LEU* 3.8 22.2 - - + -
359G ILE* 4.0 9.5 - - + +
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Residues in contact with ASP 288 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410E TYR* 2.6 41.6 + - + -
107G ARG* 3.2 37.8 + - - +
284G GLN* 2.8 29.5 + - - +
285G THR* 3.5 11.3 - - - +
287G LEU* 1.3 72.1 - - - +
289G CYS* 1.3 62.9 + - - +
291G VAL* 3.5 1.2 + - - +
292G ASN* 3.1 35.8 + - - +
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Residues in contact with CYS 289 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285G THR 2.9 18.8 + - - +
286G ALA* 3.5 7.9 - - - +
288G ASP* 1.3 76.5 - - - +
290G ALA* 1.3 62.6 + - - +
292G ASN* 3.6 5.7 + - - +
293G TYR* 3.2 25.1 + - - +
363G ALA* 5.3 1.3 - - - -
367G LEU* 4.0 28.0 - - - -
376G MET* 5.2 4.0 - - - -
377G PRO* 4.1 28.9 - - + -
378G ALA* 4.3 11.9 - - - -
381G HIS* 4.8 2.5 - - + +
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Residues in contact with ALA 290 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286G ALA 3.2 11.7 + - - +
287G LEU 3.2 7.6 + - - +
289G CYS* 1.3 79.0 - - - +
291G VAL* 1.3 58.8 + - - +
293G TYR* 3.5 1.9 + - - +
294G ALA* 2.8 32.4 + - - +
314G LEU* 4.1 3.8 - - + -
317G MET* 3.9 22.0 - - + -
363G ALA* 4.1 10.3 - - - +
366G ILE* 3.8 20.4 - - + +
367G LEU* 4.3 11.2 - - - -
----------------------------------------------------------
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Residues in contact with VAL 291 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406E LEU* 4.5 5.4 - - + -
407E LEU* 4.0 15.5 - - + -
410E TYR* 3.6 49.8 - - + -
287G LEU* 3.0 26.0 + - + +
288G ASP 3.9 3.1 - - - +
290G ALA* 1.3 74.8 - - - +
292G ASN* 1.3 62.6 + - - +
294G ALA* 3.3 5.4 + - - +
295G GLU* 2.9 40.7 + - + +
314G LEU* 3.9 27.1 - - + -
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Residues in contact with ASN 292 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410E TYR* 4.6 13.7 - - - +
288G ASP* 3.1 24.2 + - - +
289G CYS* 3.8 5.5 - - - +
291G VAL* 1.3 80.3 - - - +
293G TYR* 1.3 62.0 + - - +
295G GLU* 3.5 6.9 + - - +
296G ASN* 2.7 32.3 + - - +
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Residues in contact with TYR 293 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289G CYS 3.2 16.4 + - - +
290G ALA 3.7 0.9 - - - +
292G ASN* 1.3 78.7 - - - +
294G ALA* 1.3 60.3 + - - +
296G ASN* 3.2 4.4 + - + +
297G ARG* 2.9 79.5 + - + +
304G LEU* 4.5 2.0 - - + -
366G ILE 4.0 9.4 - - - -
367G LEU* 3.6 49.2 + - + -
370G MET* 3.5 25.8 - - + +
376G MET* 3.3 31.2 - - + -
501H FAD 4.9 0.7 - - - -
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Residues in contact with ALA 294 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290G ALA 2.8 22.9 + - - +
291G VAL* 3.8 3.4 - - - +
293G TYR* 1.3 75.5 - - - +
295G GLU* 1.3 60.0 + - - +
297G ARG 3.8 1.4 - - - +
304G LEU* 3.2 42.5 + - + +
305G THR* 3.3 24.6 + - + -
310G ILE* 4.2 6.7 - - + -
314G LEU* 4.7 2.2 - - + -
366G ILE* 3.9 15.7 - - + -
----------------------------------------------------------
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Residues in contact with GLU 295 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407E LEU* 4.2 13.0 - - - +
410E TYR* 5.1 2.2 - - + +
411E ARG* 2.9 47.9 + - - +
291G VAL* 2.9 32.8 + - + +
292G ASN* 3.8 7.4 - - - +
293G TYR 3.2 0.4 - - - -
294G ALA* 1.3 77.0 - - - +
296G ASN* 1.3 66.7 + - - +
298G MET* 4.5 2.6 - - - +
303G PRO* 3.5 20.8 - - - +
305G THR* 2.8 28.1 + - + -
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Residues in contact with ASN 296 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292G ASN* 2.7 28.7 + - - +
293G TYR* 3.2 4.1 + - + +
295G GLU* 1.3 86.9 - - - +
297G ARG* 1.3 61.9 + - - +
298G MET* 3.6 17.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293G TYR* 2.9 52.6 + - + +
294G ALA 3.8 0.3 - - - +
296G ASN* 1.3 75.9 - - - +
298G MET* 1.3 71.9 + - - +
303G PRO* 3.3 4.7 - - - +
304G LEU* 3.0 42.9 + - + +
370G MET* 6.1 0.4 - - - +
156H GLU 4.8 0.2 + - - -
157H PRO 2.8 28.9 + - - -
158H GLY* 3.6 26.5 + - - -
159H ASN* 3.8 2.6 - - - +
160H GLY 4.2 0.2 - - - +
185H TRP* 6.0 0.8 - - - +
501H FAD 2.8 51.6 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il