Contacts of the helix formed by residues 259 - 297 (chain H) in PDB entry 2VIG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with MET 259 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130H PHE* 3.8 33.2 - - + -
255H GLY* 3.9 6.3 - - - -
256H GLU* 3.1 52.2 + - + +
257H PRO 3.3 1.3 - - - +
258H GLY* 1.3 74.8 - - - +
260H GLY* 1.3 63.5 + - - +
261H PHE 3.3 2.4 + - - -
262H LYS* 3.3 11.9 + - + +
263H ILE* 3.0 38.5 + - + +
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Residues in contact with GLY 260 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
198H PHE* 3.4 12.9 - - - -
210H ILE* 2.7 37.0 + - - -
211H SER* 3.7 17.4 - - - +
212H ALA* 3.9 4.0 - - - +
254H LEU 5.8 0.2 + - - -
256H GLU 4.7 0.2 + - - -
258H GLY 3.2 0.2 - - - -
259H MET* 1.3 71.7 - - - +
261H PHE* 1.3 55.6 + - - +
263H ILE* 3.3 2.9 + - - +
264H ALA* 2.9 26.5 + - - +
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Residues in contact with PHE 261 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154H LEU* 6.3 1.1 - - + -
163H ALA* 4.2 3.1 - - + -
164H GLY* 3.7 35.7 - - - -
208H LYS* 6.0 4.7 - - - +
210H ILE* 4.1 21.2 + - + +
258H GLY 4.4 4.9 + - - +
259H MET 3.3 0.6 + - - -
260H GLY* 1.3 74.1 - - - +
262H LYS* 1.3 59.7 - - - +
264H ALA* 3.2 6.8 + - + +
265H MET* 2.9 74.6 + - + +
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Residues in contact with LYS 262 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130H PHE* 5.1 1.3 - - + -
258H GLY 5.4 0.2 + - - -
259H MET* 3.3 15.3 + - + +
261H PHE* 1.3 79.2 - - + +
263H ILE* 1.3 60.5 + - + +
265H MET* 4.0 6.0 - - - +
266H GLN* 3.0 46.7 + - - +
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Residues in contact with ILE 263 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126H PRO* 4.0 15.9 - - + -
130H PHE* 3.8 47.2 - - + -
198H PHE* 4.0 14.6 - - + -
212H ALA* 4.2 11.0 - - + -
254H LEU* 3.5 31.6 - - + +
259H MET* 3.0 43.6 + - + +
260H GLY 3.7 3.8 - - - +
262H LYS* 1.3 74.3 - - + +
264H ALA* 1.3 62.8 + - - +
266H GLN* 3.5 1.4 + - - +
267H THR* 2.5 34.6 + - - +
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Residues in contact with ALA 264 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152H PHE* 4.4 2.0 - - - -
154H LEU* 3.9 27.6 - - + -
198H PHE* 3.7 24.7 - - + -
260H GLY 2.9 17.3 + - - +
261H PHE* 3.4 7.6 - - + +
263H ILE* 1.3 77.4 - - - +
265H MET* 1.3 65.3 + - + +
267H THR* 3.3 3.3 + - - -
268H LEU* 3.0 34.8 + - - +
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Residues in contact with MET 265 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163H ALA* 3.8 20.2 - - + -
261H PHE* 2.9 62.7 + - + +
262H LYS* 4.0 5.8 - - - +
264H ALA* 1.3 88.6 - - + +
266H GLN* 1.3 63.7 + - + +
267H THR 3.3 0.2 + - - -
268H LEU* 3.3 21.9 + - + +
269H ASP* 3.2 28.1 + - - +
272H ARG* 5.8 3.8 - - - -
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Residues in contact with GLN 266 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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129H LYS* 3.1 32.9 + - + +
130H PHE* 3.4 21.1 - - + -
262H LYS* 3.0 31.9 + - - +
263H ILE 4.1 2.2 - - - +
265H MET* 1.3 75.6 - - + +
267H THR* 1.3 61.0 + - - +
269H ASP* 3.6 16.1 - - - +
270H MET* 3.6 25.9 + - - +
341H PHE* 5.1 1.2 - - - -
342H ILE* 6.5 0.9 - - + -
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Residues in contact with THR 267 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121H SER 3.5 23.0 - - - +
122H LEU* 3.6 16.0 - - + +
126H PRO* 3.5 25.4 - - + +
130H PHE* 4.9 1.4 - - - -
152H PHE* 3.6 28.3 - - + -
263H ILE* 2.5 24.0 + - - +
264H ALA 3.6 4.3 - - - -
266H GLN* 1.3 74.5 - - - +
268H LEU* 1.3 61.5 + - - +
270H MET* 3.2 13.1 + - + +
271H GLY* 2.9 24.8 + - - -
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Residues in contact with LEU 268 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122H LEU* 4.4 4.3 - - + -
152H PHE* 4.4 18.6 - - + -
154H LEU* 3.8 23.8 - - + -
163H ALA* 5.9 0.7 - - + -
264H ALA 3.0 20.2 + - - +
265H MET* 3.7 20.0 - - + +
267H THR* 1.3 75.5 - - - +
269H ASP* 1.3 59.1 + - - +
271H GLY* 3.7 1.0 - - - +
272H ARG* 2.8 57.6 + - - +
392H GLU* 3.8 41.6 - - + +
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Residues in contact with ASP 269 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265H MET* 3.2 19.5 + - - +
266H GLN* 3.6 19.2 - - - +
267H THR 3.3 0.2 - - - -
268H LEU* 1.3 77.6 - - - +
270H MET* 1.3 61.8 + - - +
272H ARG* 3.6 24.1 + - - +
273H ILE* 3.7 5.0 - - - +
341H PHE* 3.7 22.2 - - + -
342H ILE* 3.4 44.8 - - - +
345H ALA* 3.5 23.1 - - + +
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Residues in contact with MET 270 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95H TYR* 3.4 24.6 - - + +
121H SER* 3.5 28.3 + - - +
125H GLY* 3.8 27.6 - - - +
126H PRO* 4.2 1.8 - - + -
129H LYS* 5.2 13.9 - - + -
130H PHE* 6.3 0.9 - - + -
266H GLN 3.6 10.1 + - - +
267H THR* 3.2 21.8 + - - +
269H ASP* 1.3 74.3 - - - +
271H GLY* 1.3 66.1 + - - +
273H ILE* 3.3 16.8 + - - +
274H GLY 3.5 6.9 + - - -
335H LYS* 3.8 34.5 - - + -
341H PHE* 4.0 10.8 - - + -
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Residues in contact with GLY 271 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117H SER* 4.4 1.1 + - - -
121H SER* 3.6 18.7 - - - -
122H LEU* 4.2 2.0 - - - -
267H THR 2.9 13.2 + - - -
268H LEU 3.3 1.1 + - - -
270H MET* 1.3 79.1 - - - +
272H ARG* 1.3 56.0 + - - +
274H GLY* 3.0 4.3 + - - -
275H ILE* 2.9 27.9 + - - +
392H GLU* 3.0 27.1 - - - +
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Residues in contact with ARG 272 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265H MET* 5.8 4.6 - - - -
268H LEU* 2.8 42.9 + - - +
269H ASP* 3.7 23.4 + - - +
270H MET 3.3 0.2 - - - -
271H GLY* 1.3 74.9 - - - +
273H ILE* 1.3 57.0 - - - +
275H ILE* 4.4 2.2 - - - +
276H ALA* 2.9 29.6 + - - +
342H ILE* 5.4 0.6 + - - +
345H ALA* 4.0 10.1 - - + +
346H ALA* 4.7 8.6 - - - +
349H LYS* 3.6 27.9 - - + +
392H GLU* 3.0 32.0 + - + +
393H GLY* 3.9 12.7 - - - -
397H ILE* 4.2 11.9 - - - +
398H GLN* 3.6 20.6 + - - +
401H VAL* 4.0 24.6 - - - +
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Residues in contact with ILE 273 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95H TYR* 4.1 28.7 - - + -
98H TYR* 5.1 1.8 - - + -
99H ALA* 4.7 7.4 - - + -
269H ASP 3.7 7.2 - - - +
270H MET 3.3 7.4 + - - +
271H GLY 3.2 0.6 - - - -
272H ARG* 1.3 73.9 - - - +
274H GLY* 1.3 60.3 + - - +
276H ALA* 3.5 8.0 - - - +
277H SER* 2.9 29.2 + - - +
328H THR* 4.3 16.2 - - + +
331H ALA* 3.9 24.9 - - + +
332H ALA* 4.1 15.5 - - + +
335H LYS* 4.7 1.3 - - + -
341H PHE* 3.7 34.1 - - + -
345H ALA* 3.9 12.3 - - + -
348H ALA* 5.6 1.6 - - + -
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Residues in contact with GLY 274 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98H TYR* 3.8 20.3 - - - -
102H MET* 3.7 11.3 - - - +
117H SER* 3.5 18.8 - - - -
270H MET 3.5 4.6 + - - -
271H GLY 3.0 8.0 + - - -
273H ILE* 1.3 78.5 - - - +
275H ILE* 1.3 56.7 + - - +
277H SER* 3.2 7.4 + - - -
278H GLN 3.0 22.3 + - - -
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Residues in contact with ILE 275 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114H VAL* 4.5 5.6 - - + -
117H SER* 4.1 17.0 - - - +
118H VAL* 6.3 0.2 - - + -
271H GLY 2.9 8.9 + - - +
272H ARG* 4.0 4.3 - - - +
274H GLY* 1.3 74.3 - - - +
276H ALA* 1.3 60.4 + - - +
278H GLN* 3.5 9.7 - - - +
279H ALA* 2.9 29.0 + - + +
349H LYS* 3.9 27.8 - - + -
353H SER* 5.8 0.2 - - - -
388H THR* 4.2 12.6 - - - -
391H TYR* 3.6 42.2 - - + +
392H GLU* 3.3 42.0 - - + +
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Residues in contact with ALA 276 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272H ARG 2.9 19.2 + - - +
273H ILE* 3.5 7.9 - - - +
275H ILE* 1.3 75.5 - - - +
277H SER* 1.3 56.2 + - - +
279H ALA* 3.1 7.1 + - - +
280H LEU* 2.9 31.7 + - - +
328H THR* 3.5 23.1 - - + +
348H ALA* 3.8 23.8 - - + +
349H LYS* 3.9 5.1 - - - +
352H ALA* 3.3 10.1 - - + +
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Residues in contact with SER 277 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99H ALA* 3.4 41.4 + - - +
102H MET* 3.4 17.0 - - - -
103H GLU* 3.4 13.3 - - - -
273H ILE 2.9 14.8 + - - -
274H GLY 3.5 4.0 - - - -
275H ILE 3.2 0.4 - - - -
276H ALA* 1.3 73.7 - - - +
278H GLN* 1.3 61.4 + - - +
280H LEU* 3.3 11.9 + - - +
281H GLY 2.9 23.2 + - - -
328H THR* 3.6 5.7 - - - +
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Residues in contact with GLN 278 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102H MET* 3.8 12.5 - - + +
106H SER* 3.4 27.9 - - - +
110H ALA* 2.9 28.0 + - - +
114H VAL* 3.7 12.0 - - - +
233H ILE* 3.8 14.1 - - - +
274H GLY 3.0 9.6 + - - +
275H ILE* 3.5 14.5 - - + +
277H SER* 1.3 75.0 - - - +
279H ALA* 1.3 57.8 - - - +
281H GLY* 3.1 3.1 + - - -
282H ILE* 2.9 45.0 + - + +
388H THR* 3.6 13.5 - - - +
391H TYR* 2.6 30.1 + - - -
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Residues in contact with ALA 279 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275H ILE* 2.9 13.8 + - + +
276H ALA* 3.3 10.5 - - - +
278H GLN* 1.3 73.7 - - - +
280H LEU* 1.3 61.2 + - - +
282H ILE* 3.3 3.3 + - - -
283H ALA* 2.8 31.8 + - - +
352H ALA* 3.5 29.8 - - + +
353H SER* 3.8 9.2 - - - +
356H ALA* 3.6 10.3 - - + +
388H THR* 4.1 17.2 - - - +
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Residues in contact with LEU 280 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99H ALA* 5.7 0.9 - - + +
103H GLU* 3.9 24.7 - - + +
276H ALA 2.9 18.3 + - - +
277H SER* 3.3 17.0 + - - +
279H ALA* 1.3 73.5 - - - +
281H GLY* 1.3 53.3 + - - +
283H ALA* 3.3 2.2 + - + +
284H GLN* 2.7 36.9 + - - +
321H LEU* 3.9 21.1 - - + +
324H ALA* 3.6 19.1 - - + -
325H ARG* 3.5 39.3 - - + +
328H THR* 3.6 24.2 - - + +
329H TRP* 5.2 2.2 - - - +
352H ALA* 3.9 7.6 - - + -
355H ALA* 6.3 0.4 - - + -
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Residues in contact with GLY 281 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103H GLU* 3.3 32.5 - - - +
106H SER* 4.2 0.2 - - - -
107H ARG* 3.4 22.0 - - - +
277H SER 2.9 12.7 + - - -
278H GLN 3.5 3.8 - - - -
280H LEU* 1.3 76.1 - - - +
282H ILE* 1.3 61.2 + - - +
284H GLN* 3.4 1.5 + - - +
285H THR* 3.2 18.7 + - - +
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Residues in contact with ILE 282 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106H SER 4.3 5.3 + - - +
110H ALA* 4.0 23.1 - - + -
278H GLN* 2.9 32.8 + - + +
279H ALA* 3.7 6.1 - - - +
281H GLY* 1.3 72.1 - - - +
283H ALA* 1.3 66.2 + - - +
285H THR* 3.3 9.9 - - - +
286H ALA* 3.2 22.3 + - - +
356H ALA* 4.5 4.0 - - + +
360H SER* 5.3 0.7 - - - -
381H HIS* 3.7 34.9 - - + +
384H ASP* 3.8 25.1 - - + +
385H ALA* 3.8 13.2 - - + +
388H THR* 4.0 20.0 - - + -
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Residues in contact with ALA 283 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279H ALA 2.8 21.4 + - - +
280H LEU* 3.7 4.0 - - - +
282H ILE* 1.3 74.4 - - - +
284H GLN* 1.3 60.7 + - - +
286H ALA* 3.4 6.2 + - - +
287H LEU* 3.0 24.1 + - - +
321H LEU* 3.9 12.7 - - + +
352H ALA 5.3 0.4 - - - +
355H ALA* 4.6 1.8 - - + -
356H ALA* 3.9 17.7 - - - +
359H ILE* 3.6 31.3 - - + +
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Residues in contact with GLN 284 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410F TYR* 3.5 10.5 + - - -
46H ARG* 5.4 5.8 - - - +
103H GLU* 4.1 11.3 - - - +
107H ARG* 4.0 16.4 - - - +
280H LEU 2.7 21.0 + - - +
281H GLY* 3.4 5.1 + - - +
282H ILE 3.3 0.2 - - - -
283H ALA* 1.3 75.3 - - - +
285H THR* 1.3 57.0 + - - +
287H LEU* 3.4 5.9 + - - +
288H ASP* 2.9 58.4 + - - +
321H LEU* 3.5 18.4 - - + +
325H ARG* 2.9 27.7 + - - -
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Residues in contact with THR 285 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54H PHE* 4.1 13.5 - - - -
106H SER 4.9 1.8 - - - +
107H ARG* 3.6 32.7 + - - +
281H GLY 3.2 9.6 + - - +
282H ILE* 3.3 15.9 - - - +
284H GLN* 1.3 78.5 - - - +
286H ALA* 1.3 60.1 + - - +
288H ASP* 3.3 11.2 + - - +
289H CYS* 2.9 31.0 + - - +
381H HIS* 3.3 34.3 + - + +
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Residues in contact with ALA 286 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282H ILE 3.2 19.3 + - - +
283H ALA* 3.5 6.1 - - - +
284H GLN 3.2 0.2 - - - -
285H THR* 1.3 76.8 - - - +
287H LEU* 1.3 61.2 + - - +
289H CYS* 3.4 4.8 - - - +
290H ALA* 3.1 18.0 + - - +
359H ILE* 4.0 13.0 - - + -
360H SER* 4.1 20.4 - - - -
363H ALA* 3.5 18.3 - - + +
381H HIS* 3.9 20.6 - - + -
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Residues in contact with LEU 287 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406F LEU* 4.5 8.7 - - + -
410F TYR* 3.8 15.9 - - - +
283H ALA 3.0 12.5 + - - +
284H GLN* 3.6 12.6 - - - +
286H ALA* 1.3 73.3 - - - +
288H ASP* 1.3 65.2 + - - +
290H ALA* 3.3 1.4 + - - +
291H VAL* 3.0 43.1 + - + +
314H LEU* 4.1 11.4 - - + +
317H MET* 3.9 34.8 - - + -
318H ALA* 4.1 24.2 - - + +
321H LEU* 3.8 22.9 - - + -
359H ILE* 3.9 7.2 - - + +
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Residues in contact with ASP 288 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
410F TYR* 2.7 42.4 + - + -
107H ARG* 3.1 38.3 + - - +
284H GLN* 2.9 31.0 + - - +
285H THR* 3.3 10.8 + - - +
287H LEU* 1.3 71.4 - - - +
289H CYS* 1.3 63.0 + - - +
291H VAL* 4.0 1.0 - - - +
292H ASN* 3.1 27.2 + - - +
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Residues in contact with CYS 289 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285H THR 2.9 18.7 + - - +
286H ALA* 3.4 8.3 - - - +
288H ASP* 1.3 78.6 - - - +
290H ALA* 1.3 61.8 + - - +
292H ASN* 4.0 3.8 - - - +
293H TYR* 3.1 25.3 + - - +
363H ALA* 5.4 1.8 - - + -
367H LEU* 4.0 27.1 - - - -
376H MET* 4.4 6.4 - - - +
377H PRO* 4.0 28.7 - - + -
378H ALA* 4.6 8.7 - - - -
381H HIS* 4.9 2.2 - - + +
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Residues in contact with ALA 290 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286H ALA 3.1 16.1 + - - +
287H LEU 3.3 4.0 + - - +
289H CYS* 1.3 76.3 - - - +
291H VAL* 1.3 58.6 + - - +
293H TYR* 3.4 0.9 + - - +
294H ALA* 2.8 33.4 + - - +
314H LEU* 4.2 7.6 - - + -
317H MET* 4.2 5.2 - - + -
363H ALA* 4.1 21.5 - - + -
366H ILE* 3.8 22.4 - - + +
367H LEU* 4.1 11.7 - - - -
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Residues in contact with VAL 291 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
406F LEU* 4.4 7.6 - - + -
407F LEU* 3.8 19.5 - - + -
410F TYR* 3.7 44.9 - - + -
287H LEU* 3.0 30.0 + - + +
288H ASP 4.0 2.7 - - - +
290H ALA* 1.3 74.5 - - - +
292H ASN* 1.3 66.3 + - - +
294H ALA* 3.3 4.6 + - - +
295H GLU* 2.9 36.0 + - + +
314H LEU* 3.8 26.5 - - + -
----------------------------------------------------------
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Residues in contact with ASN 292 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205A LEU* 4.8 10.9 - - - +
410F TYR* 5.5 1.7 - - + -
288H ASP 3.1 17.9 + - - +
289H CYS* 4.0 4.3 - - - +
291H VAL* 1.3 78.6 - - - +
293H TYR* 1.3 66.8 + - - +
295H GLU* 3.4 3.8 + - - +
296H ASN* 2.9 41.6 + - - +
----------------------------------------------------------
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Residues in contact with TYR 293 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A ALA* 3.9 13.4 - - + +
205A LEU* 3.6 26.7 - - + -
501G FAD 4.9 1.5 + - - -
289H CYS 3.1 17.4 + - - +
290H ALA 3.8 0.9 - - - +
291H VAL 3.1 0.2 - - - -
292H ASN* 1.3 85.7 - - - +
294H ALA* 1.3 55.1 + - - +
296H ASN* 3.1 3.1 + - - +
297H ARG* 2.8 78.7 + - + +
304H LEU* 4.6 0.7 - - + -
366H ILE* 4.0 9.2 - - + -
367H LEU* 3.6 48.4 + - + -
370H MET* 3.6 22.4 - - + +
376H MET* 3.9 25.1 - - + -
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Residues in contact with ALA 294 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290H ALA 2.8 21.8 + - - +
291H VAL 3.9 1.3 - - - +
293H TYR* 1.3 74.4 - - - +
295H GLU* 1.3 62.2 + - - +
297H ARG 3.9 1.3 - - - +
304H LEU* 3.3 31.2 + - + -
305H THR* 3.2 36.1 + - + -
310H ILE* 4.1 7.9 - - + -
314H LEU* 4.5 4.5 - - + -
366H ILE* 3.9 16.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 295 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
407F LEU* 3.8 17.9 - - - +
410F TYR* 5.2 2.1 - - + +
411F ARG* 2.9 48.4 + - - +
291H VAL* 2.9 32.2 + - + +
292H ASN* 3.8 7.2 - - - +
293H TYR 3.2 0.2 - - - -
294H ALA* 1.3 76.7 - - - +
296H ASN* 1.3 67.2 + - - +
298H MET* 5.7 0.2 - - - +
303H PRO* 3.5 19.6 - - - +
305H THR* 2.7 31.3 + - + +
----------------------------------------------------------
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Residues in contact with ASN 296 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
205A LEU* 3.8 36.9 - - + +
206A GLN* 4.0 4.7 + - - +
207A ASN* 4.7 4.9 + - - +
208A LYS* 3.8 29.9 + - + +
292H ASN* 2.9 39.6 + - - +
293H TYR 3.1 1.8 + - - -
295H GLU* 1.3 88.5 - - - +
297H ARG* 1.3 61.7 + - - +
298H MET* 3.6 11.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 297 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
204A ALA* 3.0 30.0 + - - +
205A LEU* 4.1 3.4 - - + -
206A GLN* 3.6 14.8 - - - +
156G GLU 4.9 0.6 + - - -
157G PRO 2.8 29.3 + - - -
158G GLY* 3.7 19.2 + - - -
159G ASN* 3.7 3.0 - - - +
160G GLY 4.2 0.2 - - - +
185G TRP* 6.1 0.4 - - - +
501G FAD 2.9 48.4 + - - +
293H TYR* 2.8 57.0 + - + +
294H ALA 3.9 0.2 - - - +
296H ASN* 1.3 73.2 - - - +
298H MET* 1.3 67.9 + - - +
303H PRO* 3.3 3.7 - - - +
304H LEU* 3.0 39.5 + - + +
370H MET* 6.4 0.2 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il