Contacts of the helix formed by residues 307 - 337 (chain B) in PDB entry 2VIG


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU 307 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    501A  FAD      3.5    48.5    -      -       +      +
    299B  ALA*     5.4     9.2    -      -       +      +
    300B  PHE*     5.6     5.8    -      -       +      -
    303B  PRO      4.7     2.0    -      -       -      +
    304B  LEU*     2.9    30.4    +      -       +      +
    306B  LYS*     1.3    78.8    -      -       +      +
    308B  GLN*     1.3    64.9    +      -       -      +
    310B  ILE*     3.2    17.3    +      -       +      +
    311B  GLN*     3.1    23.8    +      -       -      +
    308C  GLN*     3.8    23.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 308 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    306B  LYS      3.7     3.0    +      -       -      -
    307B  LEU*     1.3    71.1    -      -       -      +
    309B  VAL*     1.3    57.4    +      -       -      +
    311B  GLN*     3.3    11.7    +      -       -      +
    312B  PHE*     3.0    35.7    +      -       -      -
    307C  LEU*     3.8    12.9    -      -       -      +
    308C  GLN*     3.3    26.1    +      -       +      +
    309C  VAL*     3.4    41.2    +      -       +      +
    400D  LEU*     3.9    23.9    -      -       +      +
    501D  FAD      3.0    30.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 309 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    396A  GLU*     4.0     7.0    -      -       +      -
    501A  FAD      4.2    10.3    -      -       +      +
    307B  LEU      5.0     0.2    -      -       -      -
    308B  GLN*     1.3    74.2    -      -       -      +
    310B  ILE*     1.3    65.6    +      -       +      +
    312B  PHE*     3.3     9.3    +      -       -      +
    313B  LYS*     3.0    44.7    +      -       +      +
    308C  GLN*     3.2    30.3    +      -       +      +
    309C  VAL*     4.8     4.3    -      -       +      +
    312C  PHE*     3.4    53.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 310 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    501A  FAD      4.0    30.5    -      -       -      +
    294B  ALA*     4.2    13.0    -      -       +      -
    304B  LEU*     3.4    37.5    -      -       +      +
    305B  THR*     4.2     2.2    -      -       -      -
    307B  LEU*     3.2    20.4    +      -       +      +
    309B  VAL*     1.3    75.9    -      -       +      +
    311B  GLN*     1.3    57.7    +      -       -      +
    313B  LYS*     3.4    17.6    +      -       +      +
    314B  LEU*     3.0    46.5    +      -       +      +
    366B  ILE*     4.0    25.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 311 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    305B  THR*     3.0    28.6    +      -       -      +
    306B  LYS*     3.7    19.8    +      -       -      +
    307B  LEU      3.1    10.9    +      -       -      +
    308B  GLN*     3.4    12.6    -      -       -      +
    309B  VAL      3.3     0.2    -      -       -      -
    310B  ILE*     1.3    77.0    -      -       -      +
    312B  PHE*     1.3    56.8    +      -       -      +
    314B  LEU*     3.4     7.2    +      -       +      +
    315B  ALA*     2.8    24.4    +      -       -      +
    400D  LEU*     3.3    27.8    -      -       +      +
    403D  ALA*     3.4    31.1    -      -       +      +
    404D  GLY*     5.5     1.4    +      -       -      -
    407D  LEU*     5.0     9.2    -      -       +      +
----------------------------------------------------------
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Residues in contact with PHE 312 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    308B  GLN*     3.0    22.6    +      -       +      +
    309B  VAL*     3.3    10.1    +      -       -      +
    311B  GLN*     1.3    74.0    -      -       -      +
    313B  LYS*     1.3    65.3    +      -       -      +
    315B  ALA*     3.1     5.6    +      -       -      +
    316B  ASP*     2.9    33.9    +      -       -      +
    309C  VAL*     3.3    38.1    -      -       +      -
    313C  LYS*     5.8     2.5    -      -       -      -
    396D  GLU*     3.7    37.7    -      -       +      -
    399D  ARG*     3.6    31.0    -      -       +      -
    400D  LEU*     3.6    32.1    -      -       +      -
    501D  FAD      4.9     0.7    -      +       -      -
----------------------------------------------------------
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Residues in contact with LYS 313 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    396A  GLU*     2.8    43.9    +      -       -      +
    501A  FAD      5.0     0.7    -      -       -      -
    309B  VAL*     3.0    27.7    +      -       +      +
    310B  ILE*     3.6    15.5    -      -       +      +
    312B  PHE*     1.3    75.1    -      -       -      +
    314B  LEU*     1.3    58.1    +      -       -      +
    316B  ASP*     3.2     6.6    +      -       -      +
    317B  MET*     2.9    38.1    +      -       -      +
    362B  GLN*     2.8    36.0    +      -       -      +
    365B  GLN*     4.3     5.9    -      -       +      +
    366B  ILE*     4.0    28.7    -      -       +      -
    312C  PHE*     5.7     1.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 314 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    287B  LEU*     3.8    14.0    -      -       +      +
    290B  ALA*     4.2     6.3    -      -       +      -
    291B  VAL*     3.7    26.7    -      -       +      +
    294B  ALA*     4.9     2.7    -      -       +      -
    305B  THR*     4.2    18.8    -      -       +      -
    310B  ILE*     3.0    35.2    +      -       +      +
    311B  GLN*     3.7     8.3    -      -       -      +
    313B  LYS*     1.3    77.7    -      -       -      +
    315B  ALA*     1.3    61.0    +      -       -      +
    317B  MET*     3.3     6.2    +      -       -      +
    318B  ALA*     3.0    24.3    +      -       -      +
    366B  ILE*     3.9    23.1    -      -       +      -
    403D  ALA*     5.4     2.0    -      -       +      -
    406D  LEU*     3.7    16.0    -      -       +      +
    407D  LEU*     4.2    17.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 315 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    311B  GLN      2.8    15.4    +      -       -      +
    312B  PHE      3.1     4.5    +      -       -      +
    314B  LEU*     1.3    75.8    -      -       -      +
    316B  ASP*     1.3    59.4    +      -       -      +
    318B  ALA*     3.3     3.7    +      -       -      +
    319B  LEU*     2.9    30.3    +      -       -      +
    399D  ARG*     3.4    39.5    -      -       +      +
    402D  ILE*     4.0    24.6    -      -       +      +
    403D  ALA*     4.1     4.7    -      -       -      +
    406D  LEU*     4.8     0.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 316 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    312B  PHE*     2.9    23.8    +      -       -      +
    313B  LYS*     3.7     6.1    -      -       -      +
    315B  ALA*     1.3    73.4    -      -       -      +
    317B  MET*     1.3    61.0    +      -       +      +
    319B  LEU*     3.4     7.8    +      -       -      +
    320B  ALA*     2.9    30.7    +      -       -      +
    350D  LEU*     4.8     3.6    -      -       -      +
    399D  ARG*     2.9    41.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 317 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    287B  LEU*     3.9    24.2    -      -       +      -
    290B  ALA*     4.0    15.9    -      -       +      -
    313B  LYS      2.9    28.5    +      -       -      +
    314B  LEU*     3.5    11.4    -      -       -      +
    316B  ASP*     1.3    77.6    -      -       +      +
    318B  ALA*     1.3    62.9    +      -       -      +
    320B  ALA      3.3     1.7    +      -       -      -
    321B  LEU*     3.0    21.0    +      -       -      +
    358B  ALA      5.6     0.4    -      -       -      -
    359B  ILE*     3.4    68.0    -      -       +      +
    362B  GLN*     3.8    18.4    -      -       +      -
    363B  ALA*     3.9    11.4    -      -       -      +
    366B  ILE*     4.0     9.2    -      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 318 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    287B  LEU*     4.1    12.0    -      -       +      +
    314B  LEU      3.0    16.3    +      -       -      +
    315B  ALA*     3.8     5.6    -      -       -      +
    317B  MET*     1.3    76.4    -      -       -      +
    319B  LEU*     1.3    63.2    +      -       -      +
    321B  LEU*     3.5     1.9    +      -       -      +
    322B  GLU*     3.0    35.7    +      -       -      +
    347D  MET*     3.8    16.2    -      -       +      -
    402D  ILE*     4.7     2.7    -      -       +      -
    406D  LEU*     4.0    28.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 319 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    315B  ALA      2.9    17.0    +      -       -      +
    316B  ASP*     3.7    11.0    -      -       -      +
    318B  ALA*     1.3    76.0    -      -       -      +
    320B  ALA*     1.3    54.7    +      -       -      +
    323B  SER*     2.6    37.2    +      -       -      +
    327D  LEU*     3.5    32.8    -      -       +      -
    347D  MET*     3.6    36.9    -      -       +      +
    350D  LEU*     3.7    36.1    -      -       +      -
    351D  ALA*     4.5     9.6    -      -       +      +
    354D  GLU*     5.8     0.9    -      -       -      +
    399D  ARG*     5.5     1.3    -      -       -      +
    402D  ILE*     5.1     1.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 320 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    316B  ASP      2.9    17.5    +      -       -      +
    317B  MET*     3.8     4.3    -      -       -      +
    319B  LEU*     1.3    75.8    -      -       -      +
    321B  LEU*     1.3    62.4    +      -       -      +
    323B  SER*     3.1    14.7    +      -       -      -
    324B  ALA*     3.1    16.3    +      -       -      +
    355B  ALA*     4.0    23.6    -      -       +      +
    358B  ALA*     6.1     2.2    -      -       +      -
    359B  ILE*     4.4     6.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 321 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    280B  LEU*     3.6    36.3    -      -       +      +
    283B  ALA*     3.8    13.9    -      -       +      +
    284B  GLN*     3.3    48.2    -      -       -      +
    287B  LEU*     4.3    13.2    -      -       +      -
    317B  MET      3.0    17.2    +      -       -      +
    318B  ALA*     3.9     3.8    -      -       -      +
    320B  ALA*     1.3    76.5    -      -       -      +
    322B  GLU*     1.3    61.8    +      -       +      +
    324B  ALA*     3.2     4.6    +      -       +      +
    325B  ARG*     2.9    42.7    +      -       -      +
    355B  ALA*     4.8     1.3    -      -       +      -
    359B  ILE*     3.9    10.7    -      -       +      +
----------------------------------------------------------
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Residues in contact with GLU 322 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    318B  ALA*     3.0    24.5    +      -       -      +
    319B  LEU      4.2     1.8    -      -       -      +
    321B  LEU*     1.3    78.7    -      -       +      +
    323B  SER*     1.3    62.9    +      -       -      +
    325B  ARG*     3.3    22.9    +      -       -      +
    326B  LEU*     3.1    28.3    +      -       -      +
    327D  LEU*     4.7     1.8    -      -       +      -
    330D  ARG*     2.8    44.1    +      -       -      +
    343D  LYS*     2.9    30.5    +      -       -      +
    347D  MET*     3.3    23.0    -      -       -      +
    406D  LEU*     5.0     3.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 323 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    319B  LEU*     2.6    27.7    +      -       -      +
    320B  ALA*     3.1    12.8    +      -       -      -
    322B  GLU*     1.3    75.8    -      -       -      +
    324B  ALA*     1.3    58.6    +      -       -      -
    326B  LEU*     3.4     6.7    +      -       -      +
    327B  LEU*     3.1    26.3    +      -       -      +
    323D  SER*     3.2    27.4    +      -       -      -
    326D  LEU*     5.3     0.2    -      -       -      +
    327D  LEU*     4.2    27.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 324 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    280B  LEU*     3.7    16.6    -      -       +      -
    320B  ALA      3.1    19.7    +      -       -      +
    321B  LEU*     3.6     5.6    -      -       -      +
    323B  SER*     1.3    76.2    +      -       -      +
    325B  ARG*     1.3    58.0    +      -       -      +
    327B  LEU*     3.4     4.2    +      -       -      +
    328B  THR*     2.9    31.5    +      -       -      -
    348B  ALA*     4.9     0.5    -      -       -      -
    351B  ALA*     4.0    17.4    -      -       +      +
    352B  ALA*     3.7    26.5    -      -       -      +
    355B  ALA*     4.6     2.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 325 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    103B  GLU*     2.9    31.8    +      -       -      +
    280B  LEU*     3.6    18.3    -      -       +      +
    284B  GLN*     2.8    27.9    +      -       -      +
    321B  LEU*     2.9    32.8    +      -       -      +
    322B  GLU*     3.6    30.2    -      -       -      +
    323B  SER      3.3     0.2    -      -       -      -
    324B  ALA*     1.3    76.6    -      -       -      +
    326B  LEU*     1.3    58.6    +      -       +      +
    328B  THR*     3.1     2.3    +      -       -      -
    329B  TRP*     2.8    71.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 326 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    322B  GLU      3.1    14.6    +      -       -      +
    323B  SER*     3.7     7.0    -      -       -      +
    325B  ARG*     1.3    76.9    -      -       +      +
    327B  LEU*     1.3    56.2    +      -       -      +
    329B  TRP*     3.4    20.5    +      -       +      +
    330B  ARG*     3.0    29.6    +      -       -      +
    326D  LEU*     3.7    47.8    -      -       +      +
    327D  LEU*     3.8    19.7    -      -       +      +
    330D  ARG*     4.0    32.8    -      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 327 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    323B  SER      3.1    17.6    +      -       -      +
    324B  ALA*     3.5     7.2    -      -       -      +
    326B  LEU*     1.3    74.6    -      -       -      +
    328B  THR*     1.3    62.0    +      -       -      +
    330B  ARG*     3.6    27.1    +      -       -      +
    331B  ALA*     3.2    19.1    +      -       -      +
    344B  GLU      4.2     3.0    -      -       -      +
    347B  MET*     4.0    11.9    -      -       +      +
    348B  ALA*     3.6    18.4    -      -       -      +
    351B  ALA*     3.5    29.8    -      -       +      -
    319D  LEU*     3.5    19.5    -      -       +      -
    323D  SER*     4.2    27.1    -      -       -      +
    326D  LEU*     3.8    21.1    -      -       +      +
----------------------------------------------------------
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Residues in contact with THR 328 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99B  ALA*     4.4     9.0    -      -       +      -
    273B  ILE*     4.1     7.1    -      -       +      +
    276B  ALA*     3.4    27.2    -      -       +      +
    277B  SER*     3.6    24.2    -      -       -      +
    280B  LEU*     3.9    19.6    -      -       +      +
    324B  ALA      2.9    19.2    +      -       -      -
    325B  ARG      3.1     7.8    +      -       -      -
    327B  LEU*     1.3    76.7    -      -       -      +
    329B  TRP*     1.3    59.1    +      -       +      +
    331B  ALA*     3.3     6.2    +      -       -      +
    332B  ALA*     3.1    24.6    +      -       -      +
    348B  ALA*     3.5    13.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 329 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34B  LEU*     4.9    20.2    -      -       +      -
     42B  LEU*     5.9     6.5    -      -       +      -
     96B  LEU*     3.9    21.8    -      -       +      -
     99B  ALA*     4.5    12.2    -      -       +      +
    100B  ILE*     4.2    24.5    -      -       +      +
    103B  GLU*     4.9     6.4    +      -       -      -
    280B  LEU*     5.2     1.6    -      -       -      +
    325B  ARG*     2.8    54.9    +      -       +      +
    326B  LEU*     4.0    20.4    -      -       +      +
    328B  THR*     1.3    78.7    -      -       +      +
    330B  ARG*     1.3    64.9    +      -       -      +
    332B  ALA*     3.3     5.6    +      -       -      +
    333B  MET*     2.9    44.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 330 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    326B  LEU      3.0    18.2    +      -       -      +
    327B  LEU*     3.7    21.1    +      -       -      +
    329B  TRP*     1.3    75.0    -      -       -      +
    331B  ALA*     1.3    56.7    +      -       -      +
    333B  MET*     3.4    13.5    +      -       +      +
    334B  LEU*     3.0    47.0    +      -       +      +
    343B  LYS*     4.6     1.0    -      -       -      +
    344B  GLU*     3.5    33.5    +      -       -      +
    347B  MET*     3.5    20.2    -      -       -      -
    322D  GLU*     3.0    30.3    +      -       -      +
    326D  LEU*     4.2    21.3    -      -       +      +
    504D  EDO      3.2    37.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 331 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    273B  ILE*     3.7    20.4    -      -       +      +
    327B  LEU      3.2    11.4    +      -       -      +
    328B  THR      3.3     9.2    +      -       -      +
    330B  ARG*     1.3    78.1    -      -       -      +
    332B  ALA*     1.3    62.9    +      -       -      +
    334B  LEU*     3.5     4.8    +      -       -      +
    335B  LYS*     3.1    19.1    +      -       -      +
    341B  PHE*     3.8     5.3    -      -       -      +
    344B  GLU*     3.8    12.8    -      -       -      +
    345B  ALA*     3.8    32.5    -      -       +      +
    348B  ALA*     4.5     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 332 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     95B  TYR*     3.8    12.0    -      -       -      +
     96B  LEU*     3.8    25.8    -      -       +      +
     99B  ALA*     4.5     4.5    -      -       +      -
    273B  ILE*     3.9    20.5    -      -       +      +
    328B  THR      3.1    13.4    +      -       -      +
    329B  TRP*     3.3    10.5    +      -       -      +
    331B  ALA*     1.3    76.9    -      -       -      +
    333B  MET*     1.3    57.7    +      -       -      +
    335B  LYS*     3.5     2.6    +      -       -      +
    336B  ASP*     3.0    34.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with MET 333 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     96B  LEU*     4.3    31.6    -      -       +      -
    329B  TRP*     2.9    44.9    +      -       +      +
    330B  ARG*     3.7    11.2    -      -       +      +
    332B  ALA*     1.3    75.4    -      -       -      +
    334B  LEU*     1.3    65.8    +      -       -      +
    336B  ASP*     3.2     7.3    +      -       -      +
    337B  ASN*     3.0    37.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 334 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    330B  ARG*     3.0    30.6    +      -       +      +
    331B  ALA      3.8     3.6    -      -       -      +
    333B  MET*     1.3    75.9    -      -       -      +
    335B  LYS*     1.3    59.8    +      -       -      +
    337B  ASN*     3.3     7.0    +      -       -      -
    339B  LYS*     2.9    52.0    +      -       +      +
    340B  PRO      3.6    17.0    -      -       -      +
    341B  PHE*     3.8     4.0    -      -       +      -
    344B  GLU*     3.4    44.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 335 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83B  ASP*     4.0    10.9    +      -       -      -
     95B  TYR*     3.5    48.2    -      -       +      -
    129B  LYS*     6.2     1.2    -      -       -      +
    270B  MET*     3.7    26.9    -      -       +      +
    273B  ILE*     4.3     3.8    -      -       +      -
    331B  ALA      3.1    14.4    +      -       -      +
    332B  ALA*     3.7     7.4    -      -       -      +
    334B  LEU*     1.3    76.0    -      -       -      +
    336B  ASP*     1.3    63.9    +      -       -      +
    338B  LYS*     3.1    16.0    +      -       -      +
    339B  LYS      4.2     1.3    +      -       -      -
    341B  PHE*     3.8    43.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 336 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83B  ASP*     4.9     1.9    -      -       -      +
     94B  ASP*     3.5    22.1    -      -       +      +
     95B  TYR*     2.7    30.4    +      -       -      +
     96B  LEU*     3.0    28.1    +      -       -      +
    332B  ALA      3.0    18.4    +      -       -      +
    333B  MET*     3.2     9.2    +      -       -      +
    335B  LYS*     1.3    76.8    -      -       -      +
    337B  ASN*     1.3    62.2    +      -       -      +
    338B  LYS*     3.3    12.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 337 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    333B  MET*     3.0    32.8    +      -       -      +
    334B  LEU*     3.3     4.0    +      -       -      +
    335B  LYS      3.2     0.4    -      -       -      -
    336B  ASP*     1.3    80.7    -      -       -      +
    338B  LYS*     1.3    74.6    +      -       -      +
    339B  LYS*     3.2    25.5    +      -       +      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il