Contacts of the helix formed by residues 780 - 827 (chain M) in PDB entry 2W4G
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 780 (chain M).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
29M ASN* 6.2 0.3 - - - +
30M LYS 5.8 0.2 - - - +
776M GLU* 2.3 33.9 + - - +
777M GLU* 2.5 3.4 + - - +
778M MET 2.3 10.4 - - - +
779M ARG* 2.2 61.0 + - - +
781M ASP* 1.3 59.8 + - - +
783M LEU 3.0 0.2 + - - -
784M ALA* 3.4 6.8 + - - +
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Residues in contact with ASP 781 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32M PHE 4.7 10.9 - - - +
777M GLU* 1.8 40.1 + - + +
778M MET* 2.2 16.5 - - - +
780M ASP* 1.3 71.4 - - - +
782M LYS* 1.3 53.8 + - + +
784M ALA* 3.2 16.5 + - - +
785M GLU* 3.4 15.1 + - - +
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Residues in contact with LYS 782 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
727M LEU* 2.3 18.4 - - - +
774M LEU* 1.9 76.8 - - - +
775M LEU 2.4 16.2 - - - +
777M GLU* 1.5 43.7 + - + +
778M MET* 0.2 357.8 - - + +
779M ARG 2.1 2.0 - - - -
781M ASP* 1.3 64.8 - - + -
783M LEU* 1.3 22.9 + - - -
785M GLU* 4.0 2.0 - - + -
786M ILE* 3.3 7.3 + - - +
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Residues in contact with LEU 783 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94C PHE* 3.2 29.2 - - + -
114C LEU* 6.1 0.7 - - + -
723M ARG 3.7 4.9 - - - +
726M VAL* 3.5 14.6 - - + -
727M LEU* 3.2 20.6 - - + -
775M LEU 3.6 5.4 - - - +
778M MET 0.9 70.5 + - - -
779M ARG* 1.3 139.5 - - + +
782M LYS 1.3 29.1 - - - +
784M ALA* 1.3 54.9 + - - -
785M GLU 3.0 1.8 - - - -
786M ILE* 3.7 1.6 - - - -
787M ILE* 2.3 41.3 + - - +
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Residues in contact with ALA 784 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115C GLY* 5.4 8.7 - - - +
778M MET 2.5 8.1 + - - +
779M ARG 4.0 0.4 + - - -
780M ASP 3.4 7.2 + - - +
781M ASP* 3.6 12.1 - - - +
783M LEU* 1.3 67.7 - - - +
785M GLU* 1.3 70.5 + - - +
787M ILE* 4.7 2.9 - - - -
788M THR* 2.7 37.9 + - - +
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Residues in contact with GLU 785 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C PHE* 5.6 0.2 - - - -
778M MET* 4.0 20.6 - - + -
781M ASP 3.4 10.4 + - - +
782M LYS* 3.5 12.6 - - - +
784M ALA* 1.3 86.1 - - - +
786M ILE* 1.3 63.2 + - - +
787M ILE 3.0 0.2 + - - -
788M THR* 4.0 1.2 - - - -
789M ARG* 3.2 22.8 + - - +
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Residues in contact with ILE 786 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C PHE* 4.9 0.4 - - - -
90C GLY* 3.5 6.3 - - - -
726M VAL 2.3 11.0 - - - +
727M LEU* 0.7 359.0 - - + +
728M ASN* 2.0 16.5 + - + +
751M ILE* 6.3 2.9 - - - -
778M MET* 4.8 2.7 - - - -
782M LYS 3.3 0.4 + - - -
783M LEU 3.0 3.8 + - - +
785M GLU* 1.3 80.2 - - + +
787M ILE* 1.3 60.4 + - - +
790M THR* 3.1 7.1 + - - -
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Residues in contact with ILE 787 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110C VAL* 3.0 44.6 - - + +
111C LEU* 4.0 6.7 - - + -
114C LEU* 3.7 21.8 - - + +
115C GLY* 4.9 1.1 - - - +
726M VAL* 2.5 34.4 + - + +
783M LEU 2.3 29.1 + - - +
784M ALA* 3.9 1.6 - - - +
786M ILE* 1.3 65.4 - - - +
788M THR* 1.3 59.8 - - - +
789M ARG 3.0 1.1 - - - -
790M THR* 2.3 30.3 + - - -
791M GLN* 2.6 43.3 + - + +
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Residues in contact with THR 788 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C THR* 4.6 10.5 - - + +
115C GLY* 3.8 23.6 - - - -
116C GLU* 2.9 49.0 + - + +
784M ALA* 2.7 27.1 + - - +
785M GLU* 4.2 1.1 - - - -
787M ILE* 1.3 76.4 - - - +
789M ARG* 1.3 59.9 + - - +
791M GLN* 3.2 4.3 + - - +
792M ALA* 3.2 15.9 + - - +
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Residues in contact with ARG 789 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42C THR* 5.4 3.4 - - - -
81C GLN* 5.8 3.4 - - - +
87C PHE* 3.1 38.2 - - + -
728M ASN* 3.3 1.8 - - - +
785M GLU 3.2 14.7 + - - +
787M ILE 3.0 0.8 - - - -
788M THR* 1.3 78.1 - - - +
790M THR* 1.3 61.6 + - - +
791M GLN 3.4 0.2 + - - -
792M ALA* 3.7 15.3 + - - +
793M ARG* 3.8 9.5 + - - +
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Residues in contact with THR 790 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111C LEU* 4.6 5.6 - - + -
728M ASN* 2.0 50.9 + - - +
729M ALA* 3.0 14.1 - - + +
730M SER* 2.1 57.9 + - - +
786M ILE 3.3 1.9 + - - -
787M ILE* 2.3 23.6 + - - -
789M ARG* 1.3 69.8 - - - +
791M GLN* 1.3 61.0 + - - +
793M ARG 4.4 0.2 - - - -
794M CYS* 2.7 32.0 + - - -
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Residues in contact with GLN 791 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111C LEU* 3.6 32.8 + - + +
114C LEU 3.2 15.6 + - - -
116C GLU* 2.8 47.5 + - + +
117C LYS 3.0 24.8 + - - +
118C MET* 4.7 11.2 - - + -
787M ILE* 2.6 33.7 + - + +
788M THR* 3.5 7.1 - - - +
789M ARG 3.1 0.2 - - - -
790M THR* 1.3 74.9 - - - +
792M ALA* 1.3 55.5 + - - +
794M CYS* 2.7 39.1 + - - +
795M ARG* 3.0 9.5 + - + +
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Residues in contact with ALA 792 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
40C ASN* 4.8 10.0 - - + +
41C PRO 4.6 8.4 - - - +
42C THR* 3.9 29.8 - - + +
116C GLU* 4.2 4.8 + - - +
788M THR 3.2 13.3 + - - +
789M ARG* 3.7 7.2 - - - +
791M GLN* 1.3 75.5 - - - +
793M ARG* 1.3 52.1 + - - +
795M ARG* 2.8 13.0 + - - +
796M GLY* 2.5 35.4 + - - -
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Residues in contact with ARG 793 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40C ASN* 1.9 57.2 + - - +
82C GLY* 3.8 15.6 + - - -
84C PHE* 4.0 6.1 - - - -
146C ILE* 3.4 20.4 - - + -
147C MET* 1.4 79.6 + - - +
730M SER* 4.0 13.5 - - - +
789M ARG 3.8 8.1 + - - +
791M GLN 3.1 0.6 + - - -
792M ALA* 1.3 75.3 - - - +
794M CYS* 1.3 53.2 + - - +
796M GLY* 2.9 1.9 + - - -
797M PHE* 2.4 38.5 + - - +
800M ARG* 4.4 13.6 - - - +
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Residues in contact with CYS 794 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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111C LEU* 5.1 7.4 - - - -
118C MET* 5.3 3.1 - - + -
126C LEU* 3.8 33.0 - - + -
146C ILE* 4.2 14.8 - - - -
730M SER* 3.3 21.3 - - - -
790M THR* 2.7 27.1 - - - -
791M GLN* 2.7 17.2 + - - +
793M ARG* 1.3 75.8 - - - +
795M ARG* 1.3 49.8 + - - +
797M PHE* 2.9 7.9 + - - +
798M LEU* 2.4 41.1 + - - +
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Residues in contact with ARG 795 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C ARG* 4.3 26.0 + - - +
41C PRO 5.9 2.0 - - - +
43C ASN* 1.3 62.4 - - - +
116C GLU* 2.5 57.8 + - - +
117C LYS 3.7 3.8 + - - -
118C MET* 3.0 38.1 - - + +
122C GLU* 5.6 2.2 - - - -
791M GLN* 3.0 15.2 + - - +
792M ALA* 2.8 13.0 + - - +
794M CYS* 1.3 70.2 - - - +
796M GLY* 1.3 69.8 - - - +
798M LEU* 2.9 15.3 + - - +
799M MET* 3.1 12.3 + - - +
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Residues in contact with GLY 796 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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35C ARG* 3.9 24.5 - - - +
40C ASN* 4.2 6.5 - - - -
41C PRO* 5.9 0.4 - - - -
792M ALA 2.5 16.4 + - - -
793M ARG 3.2 3.1 - - - -
795M ARG* 1.3 78.1 - - - +
797M PHE* 1.3 51.8 + - - +
798M LEU 2.8 0.3 + - - -
799M MET* 2.7 22.0 + - - +
800M ARG* 3.1 24.5 + - - +
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Residues in contact with PHE 797 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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125C GLU 5.9 0.4 - - - -
126C LEU* 4.3 10.1 - - + -
128C LYS* 5.7 4.0 - - + -
145C HIS 3.2 19.5 - - - -
146C ILE* 2.7 35.7 - - + +
148C SER* 4.4 2.0 - - - -
149C VAL* 2.3 42.2 - - + -
793M ARG* 2.4 22.8 + - - +
794M CYS* 3.0 4.5 - - - +
796M GLY* 1.3 70.4 - - - -
798M LEU* 1.3 90.5 + - + +
800M ARG* 3.2 28.5 + - - +
801M VAL* 3.4 24.3 + - + +
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Residues in contact with LEU 798 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118C MET* 5.0 4.3 - - + -
122C GLU* 3.7 42.4 - - + +
125C GLU* 4.5 12.1 - - + +
126C LEU* 3.2 24.5 - - + -
128C LYS* 4.8 14.4 - - - +
794M CYS 2.4 19.3 + - - +
795M ARG* 2.9 11.9 + - - +
796M GLY 2.8 0.4 + - - -
797M PHE* 1.3 106.7 - - + +
799M MET* 1.3 64.7 + - + +
801M VAL* 3.4 12.4 + - + +
802M GLU* 3.7 10.0 + - - +
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Residues in contact with MET 799 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
17C PHE* 4.9 17.9 - - + -
32C ASP* 3.0 52.3 - - + +
33C ILE* 5.3 2.0 - - + +
35C ARG* 4.4 18.8 - - + +
36C ALA* 4.5 6.0 - - + +
795M ARG 3.1 6.8 + - - +
796M GLY 2.7 11.2 + - - +
798M LEU* 1.3 72.1 - - + +
800M ARG* 1.3 58.1 + - - +
801M VAL 2.9 5.2 - - - -
802M GLU* 2.8 38.6 + - + +
803M TYR* 3.0 12.8 + - - +
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Residues in contact with ARG 800 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35C ARG 3.4 19.0 + - - +
36C ALA* 3.8 29.5 - - + +
38C GLY 3.8 17.2 + - - -
39C GLN* 4.6 0.4 - - - +
40C ASN* 2.5 37.8 + - - +
146C ILE 4.8 0.8 + - - -
147C MET 5.0 2.8 + - - -
149C VAL* 3.1 55.4 + - + +
793M ARG* 4.4 13.1 - - - +
796M GLY 3.1 5.4 + - - +
797M PHE* 3.2 40.8 + - - +
799M MET* 1.3 77.7 - - - +
801M VAL* 1.3 56.5 + - - +
803M TYR* 3.8 4.0 + - - +
804M ARG* 3.8 16.3 + - - +
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Residues in contact with VAL 801 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128C LYS* 5.8 8.3 - - - +
149C VAL* 4.1 9.4 - - + -
797M PHE* 3.4 39.0 - - + +
798M LEU* 3.4 8.0 + - + +
799M MET 2.9 1.0 - - - -
800M ARG* 1.3 76.3 - - - +
802M GLU* 1.3 74.2 - - - +
803M TYR 3.3 0.7 - - - -
804M ARG* 3.4 13.8 + - + +
805M ARG* 3.3 18.6 + - + +
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Residues in contact with GLU 802 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
798M LEU 3.7 5.3 + - - +
799M MET* 2.8 31.9 + - + +
801M VAL* 1.3 89.3 - - - +
803M TYR* 1.3 65.2 + - - +
805M ARG* 3.2 10.5 + - - +
806M MET* 2.8 36.4 + - + +
809M ARG* 3.9 25.6 + - - -
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Residues in contact with TYR 803 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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9C ASP 5.1 0.3 + - - -
13C ALA* 3.1 36.7 + - + +
16C LEU* 3.7 11.0 - - + +
17C PHE* 3.2 34.8 - + + -
36C ALA* 4.3 21.1 - - + -
37C LEU* 5.0 7.9 - - + -
799M MET 3.0 12.4 + - - +
800M ARG 3.8 6.0 + - - +
801M VAL 3.3 0.2 - - - -
802M GLU* 1.3 76.2 - - - +
804M ARG* 1.3 55.6 + - - +
805M ARG 3.1 0.7 + - - -
806M MET* 3.4 7.5 - - - +
807M VAL* 2.9 53.8 + - + +
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Residues in contact with ARG 804 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148C SER 5.0 2.4 + - - -
149C VAL* 4.4 37.0 - - - +
800M ARG 3.8 8.6 + - - +
801M VAL* 3.4 19.3 + - + +
802M GLU 3.3 0.6 - - - -
803M TYR* 1.3 77.6 - - - +
805M ARG* 1.3 51.7 - - - +
807M VAL* 4.6 5.4 - - - +
808M GLU* 2.8 44.3 + - - +
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Residues in contact with ARG 805 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
801M VAL* 3.3 12.0 + - + +
802M GLU* 3.2 21.7 + - - +
803M TYR 3.1 0.6 - - - -
804M ARG* 1.3 78.1 - - - +
806M MET* 1.3 66.2 + - - +
807M VAL 3.1 1.1 - - - -
808M GLU* 3.1 13.0 + - - +
809M ARG* 3.0 40.8 + - - +
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Residues in contact with MET 806 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B GLN* 4.0 19.5 - - + +
16C LEU 3.6 12.3 - - - +
17C PHE* 1.8 94.2 - - + -
19C ARG* 4.3 19.5 - - - +
799M MET* 5.6 0.2 - - - -
802M GLU* 2.8 36.7 + - + +
803M TYR* 3.4 6.1 - - - +
805M ARG* 1.3 74.3 - - - +
807M VAL* 1.3 60.9 + - + +
809M ARG* 2.9 40.3 - - - +
810M ARG* 3.1 7.4 + - - -
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Residues in contact with VAL 807 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B GLN* 5.5 0.4 - - - +
16C LEU* 3.9 23.1 - - + -
803M TYR* 2.9 43.8 + - + +
804M ARG* 4.6 4.5 - - - +
806M MET* 1.3 80.2 - - + +
808M GLU* 1.3 67.4 + - + +
810M ARG* 2.8 28.0 - - + +
811M GLU* 5.5 0.3 - - - +
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Residues in contact with GLU 808 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B VAL* 5.3 8.6 - - + +
804M ARG* 2.8 29.7 + - - +
805M ARG* 3.1 16.3 + - - +
807M VAL* 1.3 79.5 - - + +
809M ARG* 1.3 64.7 + - + +
810M ARG* 3.0 2.1 + - - +
811M GLU* 3.8 17.2 + - - +
812M SER* 4.5 2.1 + - - -
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Residues in contact with ARG 809 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B VAL* 4.7 19.9 - - + +
104B LEU* 5.2 12.6 - - + +
120B LEU* 4.3 36.3 - - - +
19C ARG* 5.1 5.3 - - - +
802M GLU* 3.9 20.9 + - - -
805M ARG* 3.0 28.0 + - - +
806M MET* 2.9 26.9 - - - +
808M GLU* 1.3 77.1 - - + +
810M ARG* 1.3 64.3 + - - +
811M GLU 3.0 2.2 + - - -
812M SER* 3.0 12.6 + - - -
813M ILE* 3.1 26.0 + - + +
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Residues in contact with ARG 810 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B GLN* 3.7 31.1 + - - +
125B CYS* 4.8 8.9 - - - -
15C LEU* 5.9 3.4 + - - +
16C LEU* 3.3 34.8 - - + +
806M MET 3.1 4.1 + - - -
807M VAL* 2.8 25.1 + - + +
809M ARG* 1.3 78.8 - - - +
811M GLU* 1.3 65.6 + - + +
813M ILE* 3.8 11.9 - - - +
814M PHE* 3.5 45.0 - - - -
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Residues in contact with GLU 811 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
807M VAL 5.5 0.3 - - - +
808M GLU 3.8 10.8 + - - +
809M ARG 3.2 0.4 - - - -
810M ARG* 1.3 79.3 - - + +
812M SER* 1.3 73.6 + - - +
813M ILE 2.7 8.1 + - - -
814M PHE* 2.8 28.3 + - + +
815M CYS* 2.9 13.0 + - - +
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Residues in contact with SER 812 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B GLY 4.6 0.5 - - - -
100B ALA* 3.0 32.9 + - - +
103B VAL* 3.5 33.9 - - - +
104B LEU* 5.6 3.6 - - - -
808M GLU 5.2 0.9 - - - -
809M ARG* 3.0 7.6 + - - -
811M GLU* 1.3 84.8 - - - +
813M ILE* 1.3 60.0 + - - +
815M CYS* 3.5 3.8 - - - +
816M ILE* 2.9 28.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 813 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104B LEU* 4.7 13.7 - - + -
120B LEU* 4.0 40.4 - - + +
121B LEU* 4.7 7.9 - - + -
124B GLN* 4.5 18.6 - - + +
809M ARG* 3.1 27.6 + - + +
810M ARG 3.8 7.2 - - - +
811M GLU 2.7 1.8 + - - -
812M SER* 1.3 75.6 - - - +
814M PHE* 1.3 53.3 + - + +
816M ILE* 2.4 15.3 + - + +
817M GLN* 2.3 62.0 + - + +
----------------------------------------------------------
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Residues in contact with PHE 814 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B CYS* 3.6 31.2 - - - -
810M ARG* 3.5 48.7 - - - -
811M GLU* 2.8 19.6 + - + +
813M ILE* 1.3 73.5 - - + +
815M CYS* 1.3 55.3 + - - +
817M GLN* 2.7 37.0 + - - -
818M TYR* 2.7 53.2 + + + +
----------------------------------------------------------
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Residues in contact with CYS 815 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92B ASP* 3.2 25.1 - - - -
96B VAL* 4.3 15.9 - - - -
97B ILE* 4.4 8.1 - - - -
100B ALA* 4.0 16.2 - - + -
811M GLU 2.9 6.5 + - - +
812M SER* 3.5 12.6 - - - +
814M PHE* 1.3 80.7 - - - +
816M ILE* 1.3 66.9 + - - +
818M TYR* 4.6 2.4 - - - +
819M ASN* 2.9 29.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE 816 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B ILE* 5.0 1.6 - - - +
100B ALA* 3.1 17.3 - - + -
101B PHE* 2.3 78.7 - - + +
104B LEU* 3.8 10.5 - - + -
117B LEU* 5.1 5.8 - - + -
121B LEU* 5.0 13.9 - - + -
812M SER 2.9 23.1 - - - +
813M ILE* 2.4 21.4 + - - +
815M CYS* 1.3 80.9 - - - +
817M GLN* 1.3 64.1 + - - +
819M ASN* 3.7 3.1 - - - +
820M VAL* 3.3 27.3 + - + +
----------------------------------------------------------
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Residues in contact with GLN 817 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B LEU 4.5 0.6 + - - -
121B LEU* 3.4 27.3 + - + +
124B GLN 4.5 11.7 + - - -
125B CYS* 4.8 8.0 - - - +
128B PHE* 2.7 64.9 - - + +
813M ILE* 2.3 45.0 + - + +
814M PHE* 2.7 35.6 + - - +
816M ILE* 1.3 67.9 - - - +
818M TYR* 1.3 69.3 + - + +
820M VAL* 3.3 8.9 + - - +
821M ARG 3.6 4.2 + - - -
----------------------------------------------------------
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Residues in contact with TYR 818 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B GLY* 3.5 21.2 - - - +
128B PHE* 4.9 3.4 - + - -
814M PHE* 2.7 50.2 + + + +
815M CYS* 4.6 1.3 - - - +
817M GLN* 1.3 75.5 - - + +
819M ASN* 1.3 63.7 + - - +
821M ARG* 3.0 47.4 + - + +
822M SER 3.2 10.2 + - - -
----------------------------------------------------------
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Residues in contact with ASN 819 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
18B MET* 5.2 0.6 - - - +
90B GLY 3.3 9.8 + - - -
91B ALA* 3.4 5.2 - - - +
92B ASP* 2.3 58.8 + - - +
97B ILE* 3.4 32.4 - - + +
157B ILE* 4.8 8.2 - - + +
815M CYS* 2.9 23.3 + - - +
816M ILE* 3.7 4.3 - - - +
817M GLN 3.2 0.2 + - - -
818M TYR* 1.3 79.7 - - - +
820M VAL* 1.3 60.9 + - + +
822M SER* 3.4 14.4 - - - -
823M PHE* 4.0 5.4 + - - +
----------------------------------------------------------
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Residues in contact with VAL 820 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101B PHE* 5.7 1.1 - - + -
121B LEU* 6.6 0.2 - - + -
128B PHE* 5.8 2.5 - - + -
136B MET* 2.9 49.6 - - + -
140B PHE* 4.8 7.0 - - + -
153B ILE* 5.5 9.4 - - + -
157B ILE* 5.5 7.9 - - + -
816M ILE* 3.3 23.4 + - + +
817M GLN* 3.7 7.4 - - - +
818M TYR 3.1 0.4 - - - -
819M ASN* 1.3 73.4 - - + +
821M ARG* 1.3 74.7 + - + +
822M SER 3.1 1.8 - - - -
823M PHE* 3.0 18.8 + - - +
824M MET* 3.1 17.7 + - + +
----------------------------------------------------------
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Residues in contact with ARG 821 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127B ARG 3.3 11.3 + - - -
128B PHE* 2.1 73.2 - - + -
132B GLU* 3.0 26.2 + - - +
817M GLN 3.6 0.2 + - - -
818M TYR* 3.0 39.5 + - - +
820M VAL* 1.3 85.0 - - + +
822M SER* 1.4 65.6 - - - +
824M MET* 3.1 14.3 + - + +
825M ASN* 3.1 20.0 - - - +
----------------------------------------------------------
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Residues in contact with SER 822 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B LYS 4.6 2.9 + - - -
88B LEU* 4.1 12.9 + - - -
90B GLY* 2.9 34.2 + - - -
91B ALA* 3.2 15.7 - - - +
818M TYR 3.2 4.2 + - - -
819M ASN 3.4 14.4 - - - -
820M VAL 3.1 0.2 - - - -
821M ARG* 1.4 73.7 - - - +
823M PHE* 1.3 56.7 + - - +
825M ASN* 2.6 39.5 + - - +
826M VAL* 2.9 11.1 + - - +
----------------------------------------------------------
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Residues in contact with PHE 823 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88B LEU* 6.0 0.7 - - - -
139B ALA 4.8 3.1 - - - -
140B PHE* 3.3 34.3 - + - -
156B VAL* 3.6 29.4 - - + -
157B ILE* 3.6 33.9 - - + +
160B GLY 5.2 0.4 - - - -
161B GLU* 3.5 31.9 - - + -
819M ASN 4.3 4.3 - - - +
820M VAL 3.2 9.9 - - - +
822M SER* 1.3 80.8 - - - +
824M MET* 1.3 68.2 + - + +
826M VAL* 4.3 7.0 - - + +
827M LYS* 2.9 60.2 + - + +
836M PHE* 5.2 7.6 - + - -
----------------------------------------------------------
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Residues in contact with MET 824 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B GLU* 5.4 1.6 - - - +
135B ASN* 4.5 21.1 - - + +
136B MET* 4.6 9.2 - - - +
139B ALA* 3.6 31.4 - - + -
140B PHE* 3.8 21.3 - - + -
820M VAL* 3.1 22.4 + - + +
821M ARG* 3.2 12.6 - - + +
822M SER 3.0 0.2 + - - -
823M PHE* 1.3 82.3 - - + +
825M ASN* 1.3 62.7 + - - +
827M LYS* 4.3 23.0 - - - +
828M HIS* 4.9 7.8 - - - -
----------------------------------------------------------
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Residues in contact with ASN 825 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B LYS 5.1 2.9 - - - +
821M ARG* 3.1 15.1 - - - +
822M SER* 2.6 20.6 + - - +
824M MET* 1.3 80.1 - - - +
826M VAL* 1.3 67.2 + - + +
828M HIS* 3.8 10.4 + - - +
829M TRP* 4.3 5.5 + - - +
----------------------------------------------------------
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Residues in contact with VAL 826 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B LYS* 3.3 37.5 - - + +
88B LEU* 3.8 17.0 - - + -
822M SER 2.9 14.9 + - - +
823M PHE* 4.1 4.5 - - + +
825M ASN* 1.3 79.0 - - + +
827M LYS* 1.3 53.7 - - - +
828M HIS 2.5 6.3 + - - -
829M TRP* 2.5 44.6 + - + +
832M MET* 3.1 47.6 - - + +
836M PHE* 5.4 1.8 - - + -
----------------------------------------------------------
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Residues in contact with LYS 827 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139B ALA* 3.9 22.4 - - - +
161B GLU* 2.7 48.3 + - + +
823M PHE* 2.9 40.5 + - + +
824M MET* 4.3 25.7 - - - +
826M VAL* 1.3 72.3 - - - +
828M HIS* 1.4 85.2 + - + +
829M TRP 3.5 0.4 - - - -
832M MET* 5.6 0.4 - - - -
833M LYS* 3.8 19.8 + - - +
836M PHE* 5.0 11.5 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il