Contacts of the helix formed by residues 36 - 101 (chain C) in PDB entry 2WCD
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with PRO 36 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32C ASP 3.9 5.8 - - - +
33C GLN 4.8 1.3 - - - +
34C VAL 3.5 8.1 - - - +
35C ILE* 1.3 80.2 - - + +
37C TRP* 1.3 58.5 + - - +
38C GLN* 3.1 5.2 - - + +
39C THR* 3.2 9.2 + - - +
40C PHE* 2.8 28.5 + - - +
173C ILE* 3.4 34.8 - - + +
176C GLU* 3.5 31.2 - - + +
177C ALA* 3.9 11.4 - - + +
203C VAL* 4.1 11.7 - - + -
207C LEU* 4.5 4.1 - - + +
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Residues in contact with TRP 37 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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32C ASP* 6.0 1.1 - - - +
35C ILE* 2.6 25.6 + - + +
36C PRO* 1.3 68.3 - - - +
38C GLN* 1.3 58.1 + - - +
40C PHE* 4.1 23.0 - + - -
41C ASP* 2.7 40.3 + - + +
202C VAL* 5.0 5.4 - - + -
206C LYS* 6.1 5.8 - - + -
207C LEU* 3.5 30.7 - - + -
168D SER 4.8 3.1 + - - -
171D ASP* 4.6 10.3 - - + -
172D LYS* 2.9 66.6 - - + +
175D LYS* 3.5 52.5 - - + +
176D GLU* 6.4 0.2 - - + -
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Residues in contact with GLN 38 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
36C PRO* 4.8 2.0 - - + -
37C TRP* 1.3 79.8 - - - +
39C THR* 1.3 59.9 + - - +
41C ASP* 3.8 4.5 - - - +
42C GLU* 2.9 56.2 + - - +
176C GLU* 5.9 0.7 - - - +
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Residues in contact with THR 39 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36C PRO* 3.2 8.5 + - - +
38C GLN* 1.3 80.5 - - - +
40C PHE* 1.3 56.6 + - - +
42C GLU* 3.8 11.2 + - - +
43C THR* 2.9 28.6 + - - -
169C GLN* 4.2 11.9 + - + +
172C LYS* 3.9 22.8 - - + +
173C ILE* 3.3 33.2 - - + +
176C GLU* 2.9 31.9 + - - -
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Residues in contact with PHE 40 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36C PRO 2.8 20.9 + - - +
37C TRP* 3.6 27.1 - + - +
39C THR* 1.3 70.1 - - - +
41C ASP* 1.3 70.2 + - - +
43C THR* 2.9 26.7 - - - +
44C ILE* 2.9 24.8 + - + +
173C ILE* 4.1 7.2 - - + -
207C LEU* 3.5 55.9 - - + -
210C GLU* 3.6 23.3 - - + -
211C LEU* 3.4 33.9 - - + -
168D SER* 5.4 11.9 - - - -
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Residues in contact with ASP 41 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37C TRP* 2.7 25.0 + - + +
38C GLN* 3.8 5.2 - - - +
40C PHE* 1.3 79.0 - - + +
42C GLU* 1.3 64.0 + - - +
44C ILE* 2.8 20.5 + - - +
45C LYS* 3.0 35.1 + - - +
172D LYS* 2.6 35.7 + - - +
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Residues in contact with GLU 42 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38C GLN* 2.9 49.5 + - + +
39C THR* 3.8 10.3 + - - +
41C ASP* 1.3 72.3 - - + +
43C THR* 1.3 63.5 + - - +
45C LYS* 3.2 18.0 + - - +
46C GLU* 3.2 24.6 + - - +
165C TYR* 4.2 1.7 + - - -
169C GLN* 4.9 8.9 + - - +
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Residues in contact with THR 43 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39C THR 2.9 16.3 + - - +
40C PHE* 2.9 17.7 - - - +
41C ASP 3.2 0.2 - - - -
42C GLU* 1.3 76.6 - - - +
44C ILE* 1.3 62.3 + - - +
47C LEU* 3.6 25.6 + - + +
165C TYR* 3.7 17.9 + - - -
166C PHE* 5.5 3.2 - - + -
169C GLN* 2.5 36.1 - - - +
173C ILE* 5.1 0.7 - - - -
211C LEU* 3.3 39.1 - - + +
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Residues in contact with ILE 44 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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40C PHE* 2.9 38.2 + - + +
41C ASP* 2.8 16.8 + - - +
43C THR* 1.3 75.1 - - - +
45C LYS* 1.3 68.3 + - + +
47C LEU* 3.4 9.1 + - - +
48C SER* 2.9 25.9 + - - -
210C GLU 5.0 0.4 - - - +
211C LEU* 4.0 16.4 - - + -
214C LYS* 3.6 46.7 - - + +
168D SER* 4.6 11.4 - - - +
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Residues in contact with LYS 45 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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41C ASP* 3.0 35.8 + - - +
42C GLU* 3.2 17.8 + - - +
44C ILE* 1.3 78.6 - - + +
46C GLU* 1.3 56.1 + - - +
48C SER* 2.6 30.8 + - - -
49C ARG* 2.7 15.3 + - - +
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Residues in contact with GLU 46 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42C GLU 3.2 8.7 + - - +
45C LYS* 1.3 77.9 - - - +
47C LEU* 1.3 56.9 + - - +
49C ARG* 2.7 45.1 + - - +
50C PHE* 3.3 20.3 + - - +
162C LYS* 3.2 31.1 + - - +
165C TYR* 3.7 33.9 - - + +
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Residues in contact with LEU 47 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43C THR* 3.6 18.6 + - + +
44C ILE* 3.4 10.5 + - + +
45C LYS 3.1 0.8 - - - -
46C GLU* 1.3 75.8 - - - +
48C SER* 1.3 65.8 + - - +
50C PHE* 3.7 8.6 - - + +
51C LYS* 3.6 13.0 + - - +
162C LYS* 4.6 17.7 - - + +
165C TYR* 5.0 9.4 - - + -
166C PHE* 4.5 20.9 - - + -
211C LEU* 5.2 2.9 - - + +
214C LYS* 3.6 29.4 - - + -
215C LEU* 4.4 26.0 - - + +
218C VAL* 3.7 24.5 - - + +
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Residues in contact with SER 48 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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44C ILE* 2.9 17.7 + - - -
45C LYS* 2.6 22.6 + - - -
47C LEU* 1.3 74.3 - - - +
49C ARG* 1.3 63.8 + - - -
51C LYS* 3.1 6.6 + - - +
52C GLN* 2.9 21.8 + - - +
161D GLU* 2.7 33.6 + - - +
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Residues in contact with ARG 49 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45C LYS* 2.7 9.3 + - - +
46C GLU* 2.7 63.5 + - - +
48C SER* 1.3 76.4 - - - +
50C PHE* 1.3 64.3 + - - +
52C GLN* 2.8 8.6 + - - +
53C GLU* 2.8 58.5 + - + +
162C LYS* 6.0 2.9 - - - +
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Residues in contact with PHE 50 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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46C GLU 3.3 8.2 + - - +
47C LEU* 3.7 15.5 - - + +
48C SER 3.2 0.2 - - - -
49C ARG* 1.3 83.7 - - - +
51C LYS* 1.3 68.3 + - - +
52C GLN 2.9 0.3 + - - -
53C GLU* 3.5 3.1 + - - -
54C TYR* 3.3 43.1 + + - +
155C LEU* 4.4 7.6 - - + -
158C ASP* 3.8 18.2 - - + -
159C PHE* 3.8 39.3 - + + -
162C LYS* 3.8 30.5 - - + +
218C VAL* 4.0 26.2 - - + -
221C PHE* 4.3 18.8 - + - -
222C PHE* 5.0 6.1 - + + -
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Residues in contact with LYS 51 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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47C LEU 3.6 8.4 + - - +
48C SER* 3.1 10.0 + - - +
50C PHE* 1.3 88.1 - - + +
52C GLN* 1.3 63.6 + - - +
55C SER* 3.2 20.3 + - - -
217C SER* 3.8 29.4 + - - +
218C VAL* 4.7 7.2 - - + -
221C PHE* 3.7 40.4 - - + -
157D ASN* 4.4 17.3 + - - +
160D SER* 3.9 23.9 + - - -
161D GLU* 3.0 33.3 + - - +
164D SER* 5.6 2.4 - - - -
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Residues in contact with GLN 52 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48C SER* 2.9 13.9 + - - +
49C ARG* 2.8 15.2 + - - +
51C LYS* 1.3 73.8 - - - +
53C GLU* 1.3 71.7 + - + +
55C SER* 2.8 18.9 + - - -
56C GLN* 2.9 14.1 + - + +
154D GLN* 4.6 9.4 - - - +
157D ASN* 4.8 5.8 - - - +
158D ASP* 3.4 35.7 + - - +
161D GLU* 4.9 10.3 + - + +
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Residues in contact with GLU 53 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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49C ARG* 2.8 52.4 + - + +
50C PHE* 4.2 3.9 - - - +
52C GLN* 1.3 76.6 - - + +
54C TYR* 1.3 68.8 + - + +
56C GLN* 3.1 10.9 - - - +
57C ALA* 3.1 24.9 + - - +
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Residues in contact with TYR 54 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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50C PHE* 3.3 38.4 + + + +
52C GLN 3.1 1.0 - - - -
53C GLU* 1.3 86.7 - - + +
55C SER* 1.3 67.4 + - - +
57C ALA* 3.1 4.4 + - + +
58C ALA* 2.9 26.9 + - - +
151C LEU* 4.3 20.6 - - + +
154C GLN* 3.4 16.2 - - + +
155C LEU* 3.1 46.6 + - + -
158C ASP* 3.0 33.4 + - + +
221C PHE* 4.2 16.2 - - + -
225C LEU* 4.2 6.5 - - + +
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Residues in contact with SER 55 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51C LYS 3.2 15.2 + - - -
52C GLN* 2.8 17.5 + - - -
54C TYR* 1.3 71.9 - - - +
56C GLN* 1.3 64.2 + - - +
58C ALA* 3.9 3.3 - - - +
59C SER* 2.8 31.0 + - - -
221C PHE* 3.9 9.7 - - - -
225C LEU* 5.0 0.2 - - - -
154D GLN* 3.7 21.2 + - - +
157D ASN* 3.4 33.2 + - - +
158D ASP* 5.1 0.3 + - - -
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Residues in contact with GLN 56 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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52C GLN* 2.9 13.1 + - + +
53C GLU* 3.1 15.3 - - - +
55C SER* 1.3 78.3 + - - +
57C ALA* 1.3 69.0 + - - +
59C SER* 3.4 1.9 - - - -
60C VAL* 3.1 29.3 + - + +
154D GLN* 3.3 29.3 + - - +
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Residues in contact with ALA 57 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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53C GLU 3.1 8.1 + - - +
54C TYR* 3.1 9.2 + - + +
56C GLN* 1.3 84.0 - - - +
58C ALA* 1.3 66.2 + - - +
60C VAL* 3.1 9.4 + - - +
61C LEU* 2.9 22.8 + - - +
151C LEU* 3.5 24.9 - - + -
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Residues in contact with ALA 58 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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54C TYR 2.9 19.2 + - - +
55C SER* 4.0 2.5 - - - +
57C ALA* 1.3 72.4 - - - +
59C SER* 1.3 54.4 + - - +
61C LEU* 4.5 4.0 - - - -
62C VAL* 2.7 40.6 + - + +
151C LEU* 4.1 18.2 - - + +
225C LEU* 3.8 28.5 - - + -
228C THR* 5.1 10.3 - - + -
229C VAL* 5.7 0.2 - - + -
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Residues in contact with SER 59 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55C SER* 2.8 25.1 + - - -
56C GLN 3.4 4.0 - - - -
58C ALA* 1.3 73.0 - - - +
60C VAL* 1.3 59.0 + - - +
62C VAL* 3.7 3.9 - - - +
63C GLY* 2.9 27.5 + - - -
150D ALA* 4.0 18.0 - - - +
153D SER* 3.5 16.4 + - - -
154D GLN* 3.4 42.8 + - - +
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Residues in contact with VAL 60 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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56C GLN* 3.1 22.9 + - + +
57C ALA* 3.2 16.8 - - - +
59C SER* 1.3 78.3 - - - +
61C LEU* 1.3 63.1 + - + +
63C GLY* 3.3 1.6 + - - -
64C ASP* 2.9 47.2 + - - +
150D ALA* 4.4 12.8 - - + +
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Residues in contact with LEU 61 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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57C ALA 2.9 12.8 + - - +
58C ALA* 3.8 5.2 - - - +
60C VAL* 1.3 78.8 - - + +
62C VAL* 1.3 69.0 + - + +
63C GLY 2.9 2.0 + - - -
64C ASP* 2.9 13.0 + - + +
65C ILE* 2.8 33.6 + - + +
144C ALA* 4.6 5.8 - - + +
147C LYS* 3.6 37.9 - - + +
148C LEU* 3.4 50.5 - - + +
151C LEU* 5.0 12.6 - - + -
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Residues in contact with VAL 62 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58C ALA* 2.7 25.5 + - + +
59C SER* 3.8 1.8 - - - +
61C LEU* 1.3 74.2 - - + +
63C GLY* 1.3 57.7 + - - +
65C ILE* 3.6 11.1 - - + +
66C LYS* 3.3 17.2 + - - +
148C LEU* 5.5 6.3 - - + -
228C THR* 4.0 35.0 - - + +
229C VAL* 5.9 0.7 - - + -
232C ALA* 4.9 11.9 - - + -
149D LEU* 3.3 30.5 - - + +
153D SER* 4.9 8.5 - - - +
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Residues in contact with GLY 63 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59C SER 2.9 13.6 + - - -
60C VAL 3.6 4.0 - - - -
61C LEU 2.9 0.2 - - - -
62C VAL* 1.3 75.1 - - - +
64C ASP* 1.3 66.7 + - - +
66C LYS* 3.0 13.9 + - - +
67C THR* 3.0 10.4 + - - -
146D GLY* 3.6 22.7 - - - -
149D LEU* 3.5 18.6 - - - -
150D ALA* 4.6 3.1 - - - -
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Residues in contact with ASP 64 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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60C VAL* 2.9 32.0 + - - +
61C LEU* 2.9 15.2 + - + +
63C GLY* 1.3 75.0 - - - +
65C ILE* 1.3 65.7 + - + +
67C THR* 3.0 9.8 + - - -
68C LEU* 2.8 36.2 + - + +
144C ALA* 6.1 2.2 - - + -
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Residues in contact with ILE 65 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61C LEU* 2.8 36.8 + - + +
62C VAL* 3.6 12.1 - - - +
64C ASP* 1.3 76.3 - - + +
66C LYS* 1.3 56.6 + - - +
68C LEU* 3.2 7.3 + - - +
69C LEU* 2.8 39.7 + - + +
141C PHE* 5.2 1.1 - - + -
144C ALA* 3.4 31.4 - - + -
148C LEU* 4.1 15.5 - - + -
232C ALA* 4.5 13.7 - - + +
236C ILE* 3.7 34.5 - - + -
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Residues in contact with LYS 66 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62C VAL 3.3 9.5 + - - +
63C GLY* 3.0 11.8 + - - +
65C ILE* 1.3 75.8 - - - +
67C THR* 1.3 68.5 + - - +
69C LEU* 2.9 13.7 + - + +
70C MET* 2.8 49.3 + - + +
145D SER* 3.9 21.5 + - - +
146D GLY* 4.6 0.4 - - - -
149D LEU* 4.3 25.4 - - + +
233D ASN* 3.1 30.3 + - - +
237D ASP* 5.6 2.6 + - - -
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Residues in contact with THR 67 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63C GLY 3.0 5.7 + - - -
64C ASP* 3.0 12.5 + - - +
66C LYS* 1.3 79.6 - - - +
68C LEU* 1.3 62.2 + - + +
70C MET* 3.1 4.6 + - - +
71C ASP* 2.7 51.8 + - - +
142D ASN* 2.8 29.4 + - + +
143D ASN* 3.3 26.4 + - + +
146D GLY* 3.8 6.4 - - - -
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Residues in contact with LEU 68 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64C ASP* 2.8 37.7 + - + +
65C ILE* 3.4 9.6 - - - +
67C THR* 1.3 83.1 - - + +
69C LEU* 1.3 61.6 + - - +
71C ASP* 3.2 10.9 + - - +
72C SER* 3.0 19.4 + - - -
140C SER* 3.6 35.5 + - - +
141C PHE* 3.5 31.8 - - + +
144C ALA* 4.0 19.7 - - + +
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Residues in contact with LEU 69 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65C ILE* 2.8 34.0 + - + +
66C LYS* 2.9 12.5 + - + +
68C LEU* 1.3 71.8 - - - +
70C MET* 1.3 65.0 + - + +
72C SER* 3.2 5.5 + - - -
73C GLN* 3.1 21.3 + - - +
141C PHE* 3.2 26.9 - - + -
232C ALA* 6.2 0.2 - - - -
235C ASP* 4.1 35.2 - - + +
236C ILE* 4.3 2.0 - - - -
239C ALA* 3.8 18.4 - - + -
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Residues in contact with MET 70 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66C LYS* 2.8 38.2 + - + +
67C THR 3.6 7.4 - - - +
69C LEU* 1.3 71.9 - - + +
71C ASP* 1.3 67.1 + - - +
73C GLN* 3.3 8.7 + - - +
74C ASP* 3.2 19.6 + - - +
141D PHE 4.8 0.2 - - - +
142D ASN* 3.0 42.2 + - + +
145D SER* 3.4 37.9 - - - +
236D ILE* 5.1 0.7 - - + -
237D ASP* 5.1 7.4 - - - +
240D LYS* 3.5 25.6 + - + +
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Residues in contact with ASP 71 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
67C THR* 2.7 31.6 + - - +
68C LEU* 3.3 16.3 - - + +
70C MET* 1.3 73.5 - - - +
72C SER* 1.3 64.2 + - - +
74C ASP* 3.3 4.9 + - - +
75C LYS* 3.1 23.9 + - + +
140C SER* 6.1 1.1 - - - +
139D GLN* 4.6 6.8 - - - +
142D ASN* 2.8 28.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 72 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68C LEU 3.0 12.6 + - - -
69C LEU 3.3 9.4 - - - -
71C ASP* 1.3 74.4 - - - +
73C GLN* 1.3 66.3 + - - +
75C LYS* 2.7 6.6 + - - +
76C TYR* 2.7 23.3 + - - +
137C SER* 3.2 26.5 + - - -
140C SER* 5.6 0.4 + - - -
141C PHE* 3.7 17.5 - - - -
239C ALA* 4.8 5.6 - - - +
242C LYS* 5.9 2.1 - - - +
243C LEU* 3.5 20.4 - - - +
----------------------------------------------------------
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Residues in contact with GLN 73 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69C LEU 3.1 9.4 + - - +
70C MET* 3.3 13.2 + - - +
72C SER* 1.3 79.6 + - - +
74C ASP* 1.3 73.0 + - - +
76C TYR* 3.1 9.8 + - - +
77C PHE* 2.8 35.9 + - - +
242C LYS* 3.3 24.7 + - - +
240D LYS* 5.5 2.2 - - - +
----------------------------------------------------------
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Residues in contact with ASP 74 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70C MET 3.2 3.8 + - - +
71C ASP 3.6 7.6 - - - +
72C SER 3.2 0.8 - - - -
73C GLN* 1.3 84.4 + - - +
75C LYS* 1.3 57.4 + - - +
77C PHE* 3.2 10.1 + - - +
78C GLU* 2.9 30.6 + - - +
135D LEU* 4.2 10.3 - - + +
138D SER* 3.1 20.2 + - - -
139D GLN* 3.4 35.0 + - + +
142D ASN* 3.8 1.3 + - - +
240D LYS* 3.0 33.9 + - - -
244D THR* 4.9 7.6 - - - +
----------------------------------------------------------
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Residues in contact with LYS 75 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71C ASP 3.1 13.8 + - - +
72C SER 2.7 14.2 + - - +
74C ASP* 1.3 73.4 - - - +
76C TYR* 1.3 59.6 + - - +
78C GLU* 3.6 17.5 + - - +
79C ALA* 3.1 24.1 + - - +
133C SER* 3.7 33.2 + - - +
134C LEU* 4.1 3.9 - - - +
136C VAL* 4.5 17.5 - - + -
137C SER* 4.3 15.7 - - - +
139D GLN* 4.0 21.5 - - - +
----------------------------------------------------------
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Residues in contact with TYR 76 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72C SER* 2.7 15.2 + - - +
73C GLN* 3.3 17.7 - - - +
75C LYS* 1.3 71.2 - - - +
77C PHE* 1.3 69.5 + - - +
79C ALA* 3.2 2.3 + - - +
80C THR* 2.8 44.5 + - + +
134C LEU* 3.8 15.0 - - + +
242C LYS* 3.6 47.2 - - + +
243C LEU* 4.0 21.5 - - + +
246C GLU* 3.3 40.9 + - + +
292C HIS* 3.7 11.2 + + - -
----------------------------------------------------------
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Residues in contact with PHE 77 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73C GLN* 2.8 24.5 + - - +
74C ASP* 3.4 13.2 - - - +
76C TYR* 1.3 79.3 - - - +
78C GLU* 1.3 77.6 + - - +
80C THR* 2.8 8.8 + - - -
81C GLN* 2.7 49.5 + - + +
135D LEU* 4.1 11.2 - - + -
244D THR* 3.5 46.4 - - + -
247D ILE* 3.6 40.4 - - + -
248D ALA* 4.4 5.6 - - + -
----------------------------------------------------------
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Residues in contact with GLU 78 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
74C ASP 2.9 11.4 + - - +
75C LYS* 3.6 19.9 + - - +
77C PHE* 1.3 87.5 - - - +
79C ALA* 1.3 66.0 + - - +
81C GLN* 3.5 2.6 - - - +
82C THR* 2.7 35.6 + - - +
133C SER* 3.7 19.8 + - - -
132D LYS* 5.9 2.8 - - - +
135D LEU* 3.1 34.6 - - + +
139D GLN* 5.0 3.1 + - - -
----------------------------------------------------------
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Residues in contact with ALA 79 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
75C LYS 3.1 16.3 + - - +
76C TYR 3.2 4.0 + - - +
78C GLU* 1.3 80.2 + - - +
80C THR* 1.3 63.7 + - - +
82C THR* 3.4 5.9 + - - -
83C VAL* 3.1 28.6 + - - +
130C ALA* 4.0 20.9 - - + +
133C SER* 5.0 3.8 - - - -
134C LEU* 3.7 31.4 - - + -
250C ILE* 5.1 1.3 - - + -
----------------------------------------------------------
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Residues in contact with THR 80 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76C TYR* 2.8 52.7 + - + +
77C PHE* 2.8 25.5 + - - -
79C ALA* 1.3 73.1 - - + +
81C GLN* 1.3 53.6 + - - +
83C VAL* 3.1 9.0 + - - +
84C TYR* 2.8 36.4 + - - +
246C GLU* 3.6 20.4 - - + +
250C ILE* 5.4 0.2 - - - -
288C TYR* 4.5 5.5 + - - -
292C HIS* 3.9 15.5 - - + +
----------------------------------------------------------
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Residues in contact with GLN 81 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77C PHE* 2.7 53.1 + - + +
78C GLU* 3.5 3.8 - - - +
80C THR* 1.3 72.7 + - - +
82C THR* 1.3 63.9 + - - +
84C TYR* 3.0 27.9 + - - +
85C GLU* 2.6 61.0 + - - +
131D GLN* 4.3 1.9 + - - -
247D ILE* 4.8 3.6 - - + +
248D ALA* 3.2 38.3 + - + +
251D GLY* 4.8 0.6 - - - -
----------------------------------------------------------
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Residues in contact with THR 82 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
78C GLU* 2.7 26.3 + - - +
79C ALA* 3.4 12.1 - - - +
81C GLN* 1.3 73.6 + - - +
83C VAL* 1.3 66.8 + - + +
85C GLU* 3.3 15.5 + - - +
86C TRP* 3.3 17.3 + - - +
126C LYS* 4.4 36.8 + - + +
130C ALA* 5.2 2.9 - - + -
----------------------------------------------------------
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Residues in contact with VAL 83 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79C ALA 3.2 13.7 - - - +
80C THR 3.1 7.7 + - - +
82C THR* 1.3 78.8 - - + +
84C TYR* 1.3 57.6 + - - +
85C GLU 2.9 0.9 + - - -
86C TRP* 2.9 4.6 + - - +
87C CYS* 2.7 42.9 + - + +
126C LYS* 6.3 0.2 - - - -
127C LEU* 3.5 35.4 - - + -
130C ALA* 4.0 16.6 - - + -
250C ILE* 4.0 14.4 - - + -
253C ILE* 4.5 7.6 - - + -
288C TYR* 3.8 27.6 - - + +
----------------------------------------------------------
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Residues in contact with TYR 84 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C THR 2.8 16.5 + - - +
81C GLN* 3.5 29.8 - - - +
83C VAL* 1.3 73.3 - - - +
85C GLU* 1.3 67.4 + - + +
87C CYS* 4.1 7.2 - - - +
88C GLY* 3.5 15.1 + - - -
288C TYR* 5.2 3.8 + - + -
289C GLN* 3.7 34.2 + - - +
248D ALA 6.0 0.2 - - - -
251D GLY 6.3 0.7 - - - -
252D GLU* 3.9 32.6 + - - -
255D THR* 4.9 3.3 - - + +
----------------------------------------------------------
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Residues in contact with GLU 85 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
81C GLN* 2.6 45.0 + - - +
82C THR* 3.4 12.7 + - - +
83C VAL 2.9 1.0 + - - -
84C TYR* 1.3 78.0 - - + +
86C TRP* 1.3 64.7 + - - +
88C GLY* 3.2 8.1 + - - -
89C VAL* 3.2 16.1 + - - +
126C LYS* 5.6 4.4 + - - +
131D GLN* 2.8 29.0 + - - +
251D GLY* 3.3 11.2 - - - -
254D LYS* 3.6 29.1 + - + +
255D THR* 3.5 28.5 - - + +
258D GLU* 5.5 5.1 - - - +
----------------------------------------------------------
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Residues in contact with TRP 86 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
82C THR 3.3 7.4 + - - +
83C VAL* 2.9 7.4 + - - +
85C GLU* 1.3 73.3 - - - +
87C CYS* 1.3 88.8 + - + +
88C GLY 2.5 16.9 + - - -
89C VAL* 3.0 15.5 + - + +
90C ALA* 2.8 38.1 + - + +
119C VAL* 2.9 33.6 + - + +
120C LEU* 4.7 2.9 - - + -
122C ASP* 4.1 13.2 - - - -
123C GLY* 3.0 31.6 - - - -
126C LYS* 4.1 22.8 - - + +
127C LEU* 4.2 17.0 - - + -
253C ILE* 4.1 18.6 - - + -
257C THR* 3.6 31.6 - - + -
281C MET* 3.9 16.4 - - + -
258D GLU* 5.3 0.2 - - - -
----------------------------------------------------------
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Residues in contact with CYS 87 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C VAL* 2.7 28.1 + - + +
84C TYR* 4.2 7.0 - - - +
86C TRP* 1.3 93.3 - - + +
88C GLY* 1.3 55.8 + - - +
90C ALA* 4.1 4.1 - - - +
91C THR* 3.1 24.6 + - - -
253C ILE* 3.7 31.6 - - - -
285C CYS* 3.7 33.9 - - - +
288C TYR* 4.6 6.7 - - - -
289C GLN* 4.7 4.9 - - - +
----------------------------------------------------------
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Residues in contact with GLY 88 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84C TYR 3.5 9.0 + - - -
85C GLU 3.2 7.5 + - - -
86C TRP 2.5 11.7 + - - -
87C CYS* 1.3 75.1 - - - +
89C VAL* 1.3 63.6 + - - +
90C ALA 3.2 0.7 - - - -
91C THR* 3.6 9.5 + - - -
92C GLN* 3.6 17.9 + - - +
255D THR* 5.2 4.3 - - - -
----------------------------------------------------------
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Residues in contact with VAL 89 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
85C GLU 3.2 14.4 + - - +
86C TRP* 3.1 30.3 - - + +
88C GLY* 1.3 71.8 - - - +
90C ALA* 1.3 64.4 + - - +
92C GLN* 3.2 16.4 + - - +
93C LEU* 3.3 24.2 + - + +
119C VAL* 4.6 5.2 - - + -
255D THR* 4.0 13.0 - - - +
258D GLU* 4.5 18.8 - - - +
259D THR* 3.3 39.0 - - - +
262D PHE* 4.6 8.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 90 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86C TRP* 2.8 46.8 + - + +
87C CYS* 4.1 6.3 - - - +
89C VAL* 1.3 78.4 - - - +
91C THR* 1.3 63.3 + - - +
93C LEU* 2.9 4.7 + - - +
94C LEU* 2.9 38.2 + - + +
119C VAL* 3.9 16.2 - - + -
281C MET* 5.0 1.3 - - + -
----------------------------------------------------------
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Residues in contact with THR 91 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C CYS 3.1 16.8 + - - -
88C GLY* 3.6 8.0 + - - -
89C VAL 3.3 1.0 + - - -
90C ALA* 1.3 77.1 - - - +
92C GLN* 1.3 59.8 + - + +
94C LEU* 3.5 7.7 + - - +
95C ALA* 2.9 32.1 + - + +
282C ILE* 3.5 32.1 - - + +
285C CYS* 3.8 20.2 - - - +
----------------------------------------------------------
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Residues in contact with GLN 92 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
88C GLY 3.6 15.2 + - - +
89C VAL* 3.2 7.7 + - - +
91C THR* 1.3 78.4 - - + +
93C LEU* 1.3 55.6 + - - +
95C ALA* 3.3 7.3 + - - +
96C ALA* 2.9 28.9 + - - +
255D THR* 5.6 1.0 + - - -
256D GLU* 3.3 31.4 + - - +
259D THR* 3.4 27.9 + - + +
263D TYR* 3.5 21.4 + - - +
280D LYS* 4.3 14.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 93 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89C VAL* 3.3 14.3 + - + +
90C ALA* 2.9 9.0 + - - +
92C GLN* 1.3 72.2 - - - +
94C LEU* 1.3 60.8 + - - +
95C ALA 3.1 1.1 - - - -
96C ALA* 3.1 4.4 + - - +
97C TYR* 2.8 30.1 + - - +
112C GLN* 4.9 2.9 + - - +
115C ILE* 3.9 16.2 - - + -
116C LEU* 5.3 2.9 - - + -
119C VAL* 3.9 22.7 - - + -
259D THR* 4.1 10.3 - - + -
262D PHE* 3.4 44.6 - - + -
263D TYR* 3.0 39.5 - - + -
266D TYR* 5.0 1.2 + - + -
----------------------------------------------------------
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Residues in contact with LEU 94 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90C ALA* 2.9 45.0 + - + +
91C THR* 3.9 5.2 - - - +
93C LEU* 1.3 73.1 - - + +
95C ALA* 1.3 56.8 + - - +
97C TYR* 3.3 4.9 + - + +
98C ILE* 2.9 36.0 + - - +
116C LEU* 3.9 24.2 - - + -
119C VAL* 5.5 2.5 - - + -
120C LEU* 4.6 14.8 - - + -
260C THR* 5.0 4.7 - - + -
278C ALA* 4.0 30.1 - - + +
281C MET* 3.9 29.2 - - + -
282C ILE* 4.0 15.9 - - + -
----------------------------------------------------------
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Residues in contact with ALA 95 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91C THR* 2.9 23.8 + - + +
92C GLN* 3.4 7.9 - - - +
94C LEU* 1.3 76.8 - - - +
96C ALA* 1.3 62.7 + - - +
98C ILE* 3.4 7.4 + - - +
99C LEU* 3.0 22.9 + - - +
282C ILE* 4.1 13.2 - - + +
----------------------------------------------------------
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Residues in contact with ALA 96 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
92C GLN 2.9 13.5 + - - +
93C LEU* 3.4 9.0 - - - +
95C ALA* 1.3 74.2 - - - +
97C TYR* 1.3 56.9 + - - +
99C LEU* 2.9 8.4 + - - +
100C LEU* 2.7 36.6 + - + +
112C GLN* 4.4 1.8 - - - -
263D TYR* 4.2 10.3 - - + +
266D TYR* 4.3 8.3 - - - +
273D LEU* 3.4 33.0 - - + -
----------------------------------------------------------
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Residues in contact with TYR 97 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93C LEU 2.8 18.8 + - - +
94C LEU 3.6 7.9 - - - +
96C ALA* 1.3 73.0 - - - +
98C ILE* 1.3 66.8 + - + +
101C PHE* 3.2 27.8 + + + +
112C GLN* 3.1 43.9 + - + +
116C LEU* 4.0 18.6 - - + -
269C LEU* 3.0 37.0 + - + -
274C LEU* 2.8 31.6 - - + +
275C LYS* 3.1 32.0 + - + +
278C ALA* 3.8 24.9 - - + -
----------------------------------------------------------
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Residues in contact with ILE 98 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94C LEU 2.9 22.6 + - - +
95C ALA* 3.5 8.7 - - - +
97C TYR* 1.3 84.9 - - + +
99C LEU* 1.3 61.2 + - - +
101C PHE 4.1 1.6 - - - +
102C ASP* 3.9 14.7 + - - +
275C LYS* 3.5 52.7 + - + +
278C ALA* 3.9 5.6 - - + -
279C LYS* 3.8 27.1 - - + -
282C ILE* 4.9 6.7 - - + -
----------------------------------------------------------
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Residues in contact with LEU 99 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95C ALA 3.0 11.8 + - - +
96C ALA* 2.9 11.2 + - - +
98C ILE* 1.3 76.8 - - - +
100C LEU* 1.3 81.9 + - + +
101C PHE 3.0 6.1 + - - -
102C ASP* 3.2 18.5 + - + +
273D LEU* 4.9 16.2 - - + -
----------------------------------------------------------
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Residues in contact with LEU 100 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96C ALA 2.7 21.5 + - - +
99C LEU* 1.3 93.4 - - + +
101C PHE* 1.3 74.7 + - + +
102C ASP 3.5 0.4 - - - -
103C GLU 3.7 5.5 - - - +
105C ASN* 3.6 23.3 + - - +
108C LYS* 4.0 17.5 - - + +
112C GLN* 4.5 1.8 - - - +
266D TYR* 4.0 18.4 - - + -
271D LEU* 3.8 38.6 - - + -
273D LEU* 4.5 6.5 - - + -
----------------------------------------------------------
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Residues in contact with PHE 101 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97C TYR* 3.2 23.7 + + + +
98C ILE 4.1 5.4 - - - -
99C LEU 3.0 1.0 - - - -
100C LEU* 1.3 89.0 - - + +
102C ASP* 1.3 66.3 + - - +
103C GLU 3.3 4.7 - - - -
104C TYR* 4.2 12.1 - + - -
105C ASN* 3.6 36.6 - - + -
108C LYS* 3.9 6.7 - - + -
109C ALA* 3.5 28.3 - - + -
112C GLN* 3.6 34.3 - - + -
269C LEU* 3.5 32.8 - - + +
270C MET* 3.4 9.8 - - - +
275C LYS* 3.0 20.6 + - - +
266D TYR* 5.2 0.4 - + - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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