Contacts of the helix formed by residues 1346 - 1389 (chain C) in PDB entry 2XKK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER1346 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1207C ASP* 4.2 4.1 + - - -
1236C GLN 3.2 15.1 + - - -
1237C THR* 4.2 18.8 - - - -
1238C THR 5.3 1.0 - - - -
1239C GLY 4.7 2.6 - - - +
1333C LEU* 4.6 0.2 - - - -
1345C LYS* 1.3 79.0 - - - +
1347C ILE* 1.3 58.0 + - - +
1348C ARG* 2.8 16.7 + - - +
1349C ARG* 2.7 37.4 + - - +
1350C ILE* 2.9 23.4 + - - +
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Residues in contact with ILE1347 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1169C LEU* 3.8 35.9 - - + -
1185C PRO* 6.1 0.2 - - + -
1187C HIS* 3.8 20.2 - - + +
1210C LEU* 4.4 18.8 - - + -
1214C ILE* 4.5 16.6 - - + -
1236C GLN* 2.9 44.8 + - + +
1333C LEU* 3.7 21.3 - - + +
1345C LYS 3.7 0.4 + - - -
1346C SER* 1.3 69.2 - - - +
1348C ARG* 1.3 70.0 + - - +
1350C ILE* 3.5 5.6 + - - +
1351C LEU* 3.3 20.4 + - + +
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Residues in contact with ARG1348 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1199C LEU* 3.9 3.3 - - + +
1203C PRO 3.8 18.8 + - - -
1204C GLN* 4.6 10.1 + - - +
1205C THR 3.6 20.2 + - - +
1206C SER* 5.3 0.2 - - - +
1207C ASP* 3.1 38.7 + - + +
1210C LEU* 3.7 25.7 - - + +
1236C GLN 4.6 0.4 + - - -
1346C SER* 2.8 8.2 + - - +
1347C ILE* 1.3 79.6 - - - +
1349C ARG* 1.3 77.5 + - - +
1351C LEU* 3.1 5.7 + - - +
1352C LEU* 3.1 47.5 + - + +
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Residues in contact with ARG1349 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1343C GLN* 3.4 32.4 + - - +
1345C LYS* 4.3 9.6 - - + +
1346C SER* 2.7 39.9 + - - +
1348C ARG* 1.3 89.8 - - - +
1350C ILE* 1.3 57.3 + - - +
1352C LEU* 3.2 8.0 + - - +
1353C GLU* 2.8 58.9 + - - +
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Residues in contact with ILE1350 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1038C ILE* 4.1 24.0 - - + +
1168C ILE* 4.5 9.2 - - + -
1169C LEU* 3.8 33.9 - - + -
1333C LEU* 4.1 13.7 - - + -
1335C MET* 3.6 28.9 - - + -
1345C LYS* 3.6 25.4 - - + +
1346C SER 2.9 22.3 + - - +
1347C ILE 3.7 4.9 - - - +
1349C ARG* 1.3 75.1 - - - +
1351C LEU* 1.3 64.2 + - + +
1353C GLU* 3.0 4.8 + - - +
1354C TRP* 2.7 28.8 + - + +
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Residues in contact with LEU1351 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1166C PRO* 4.1 24.0 - - + -
1169C LEU* 4.1 18.2 - - + -
1192C VAL* 3.8 14.1 - - + +
1195C GLY 4.5 2.9 - - - +
1196C THR* 3.4 32.3 - - + +
1199C LEU* 3.9 9.9 - - + -
1210C LEU* 5.1 3.8 - - + -
1214C ILE* 3.7 28.9 - - + -
1347C ILE 3.3 10.5 + - - +
1348C ARG 3.1 8.2 + - - +
1350C ILE* 1.3 81.0 - - + +
1352C LEU* 1.3 58.0 + - - +
1354C TRP* 3.5 5.7 - - + +
1355C ILE* 2.9 36.0 + - - +
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Residues in contact with LEU1352 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1199C LEU* 3.2 40.3 - - + +
1203C PRO* 3.8 28.9 - - + +
1348C ARG* 3.1 46.0 + - + +
1349C ARG* 3.5 9.0 - - - +
1351C LEU* 1.3 76.6 - - - +
1353C GLU* 1.3 61.8 + - - +
1354C TRP 3.3 0.5 + - - -
1355C ILE* 3.4 13.7 + - + +
1356C GLU* 3.5 18.4 + - - +
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Residues in contact with GLU1353 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1038C ILE* 3.7 16.6 - - + +
1337C GLY* 3.3 11.6 - - - -
1338C GLU* 3.2 32.5 + - + +
1339C ASP* 3.7 5.1 - - - +
1345C LYS* 2.9 29.2 + - - +
1349C ARG* 2.8 36.2 + - - +
1350C ILE* 3.6 3.8 - - - +
1352C LEU* 1.3 77.6 - - - +
1354C TRP* 1.3 60.7 + - - +
1356C GLU* 3.7 14.9 + - + +
1357C ILE* 3.7 13.9 + - - +
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Residues in contact with TRP1354 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1038C ILE* 3.8 16.8 - - + -
1039C SER* 3.1 31.8 + - - +
1163C ALA* 3.9 9.2 - - - +
1164C ARG 3.3 20.6 - - - -
1165C VAL* 3.1 28.3 - - - -
1166C PRO* 3.4 32.9 - - + +
1168C ILE* 4.8 3.4 - - + -
1196C THR* 4.8 8.7 - - + -
1200C ILE* 6.4 1.8 - - + -
1350C ILE* 2.7 17.4 + - + +
1351C LEU* 3.1 12.1 + - + +
1353C GLU* 1.3 78.4 - - - +
1355C ILE* 1.3 80.0 + - + +
1357C ILE* 2.9 20.1 + - + +
1358C ARG* 3.0 37.4 + - + -
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Residues in contact with ILE1355 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1196C THR* 3.8 16.6 - - + +
1199C LEU* 3.6 19.7 - - + -
1200C ILE* 3.5 53.4 - - + +
1351C LEU 2.9 20.8 + - - +
1352C LEU* 3.7 9.9 - - + +
1353C GLU 3.4 0.2 - - - -
1354C TRP* 1.3 85.9 - - + +
1356C GLU* 1.3 63.8 + - - +
1357C ILE 2.8 1.4 + - - -
1358C ARG* 3.1 2.4 + - - +
1359C LYS* 2.7 50.4 + - + +
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Residues in contact with GLU1356 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1338C GLU* 4.8 5.2 - - - +
1352C LEU 3.5 13.2 + - - +
1353C GLU* 3.9 11.2 - - + +
1354C TRP 3.3 0.6 - - - -
1355C ILE* 1.3 80.4 - - - +
1357C ILE* 1.3 59.0 + - + +
1359C LYS* 3.4 40.2 + - - +
1360C LYS* 3.5 27.8 + - - +
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Residues in contact with ILE1357 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1037C HIS* 4.5 3.6 - - + -
1038C ILE* 3.9 22.4 - - + -
1039C SER* 3.8 36.8 - - - -
1338C GLU* 4.2 26.9 - - + +
1353C GLU 3.7 13.2 - - - +
1354C TRP* 2.9 19.9 + - + +
1355C ILE 2.8 0.8 + - - -
1356C GLU* 1.3 78.8 - - - +
1358C ARG* 1.3 63.5 + - + +
1359C LYS 3.3 0.4 - - - -
1360C LYS* 3.4 5.7 + - - +
1361C THR* 2.9 36.8 + - - +
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Residues in contact with ARG1358 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139C GLU* 2.7 45.0 + - - -
1162C PRO 4.4 1.2 + - - -
1163C ALA 3.8 18.7 + - - -
1164C ARG* 3.0 33.3 + - - +
1354C TRP* 3.0 40.8 + - + +
1355C ILE* 3.9 4.5 - - - +
1357C ILE* 1.3 74.7 - - - +
1359C LYS* 1.3 67.6 + - - +
1361C THR* 3.8 16.7 - - - +
1362C VAL* 2.8 46.0 + - + +
1365C ARG* 3.9 7.7 - - - +
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Residues in contact with LYS1359 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1200C ILE* 6.1 3.8 - - - -
1355C ILE* 2.7 29.5 + - + +
1356C GLU* 3.4 42.9 + - - +
1358C ARG* 1.3 79.2 - - - +
1360C LYS* 1.3 63.2 + - - +
1362C VAL* 3.8 4.0 - - - +
1363C THR* 3.0 26.8 + - - -
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Residues in contact with LYS1360 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1338C GLU* 3.9 27.0 + - - +
1356C GLU* 3.5 16.1 + - - +
1357C ILE* 3.4 6.3 + - - +
1358C ARG 3.3 0.4 - - - -
1359C LYS* 1.3 80.0 - - - +
1361C THR* 1.3 54.1 + - - +
1363C THR* 3.6 7.8 - - + -
1364C ARG* 2.7 62.8 + - + +
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Residues in contact with THR1361 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139C GLU* 3.9 2.7 - - - +
1144C THR* 3.7 32.8 + - + +
1161C LEU 5.6 0.5 + - - -
1162C PRO* 4.2 15.2 - - + +
1163C ALA 5.5 0.8 + - - +
1357C ILE* 2.9 29.6 + - - +
1358C ARG* 3.1 27.9 + - - +
1360C LYS* 1.3 73.7 - - - +
1362C VAL* 1.3 70.7 + - - +
1364C ARG* 3.2 11.3 + - - +
1365C ARG* 3.1 17.3 + - - +
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Residues in contact with VAL1362 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1358C ARG* 2.8 55.6 + - + +
1359C LYS* 3.8 4.9 - - - +
1361C THR* 1.3 70.3 - - - +
1363C THR* 1.3 69.1 + - - +
1365C ARG* 3.0 38.2 + - - +
1366C LEU* 3.2 26.9 + - + +
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Residues in contact with THR1363 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1359C LYS 3.0 19.4 + - - -
1360C LYS* 3.6 9.5 - - + +
1362C VAL* 1.3 77.5 - - - +
1364C ARG* 1.3 57.3 + - + +
1365C ARG 2.4 16.5 + - - -
1366C LEU* 2.7 17.6 + - - +
1367C GLN* 3.0 37.4 + - + +
----------------------------------------------------------
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Residues in contact with ARG1364 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1143C GLY 3.6 23.4 + - - +
1144C THR* 3.8 23.1 + - - +
1145C SER 4.6 5.1 + - - -
1146C GLU* 2.7 32.5 + - - -
1360C LYS* 2.7 49.4 + - - +
1361C THR* 3.4 7.2 - - - +
1363C THR* 1.3 80.3 - - - +
1365C ARG* 1.3 56.4 + - - +
1367C GLN* 3.5 15.9 + - - +
1368C TYR* 3.1 25.6 + - - +
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Residues in contact with ARG1365 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1139C GLU* 3.2 40.0 + - - -
1142C GLN* 3.3 39.9 - - + +
1144C THR* 3.9 8.3 - - + -
1358C ARG* 3.9 10.7 - - - +
1361C THR 3.1 10.1 + - - +
1362C VAL* 3.0 39.7 + - - +
1363C THR 2.4 11.3 + - - -
1364C ARG* 1.3 67.6 - - - +
1366C LEU* 1.3 72.4 + - + +
1368C TYR* 2.9 17.8 + - - +
1369C HIS* 2.9 24.8 + - + +
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Residues in contact with LEU1366 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1362C VAL* 3.5 26.7 - - + +
1363C THR* 2.7 14.5 + - - +
1365C ARG* 1.3 90.0 - - + +
1367C GLN* 1.3 60.6 + - + +
1369C HIS* 4.3 7.5 - - + +
1370C LEU* 2.8 33.1 + - - +
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Residues in contact with GLN1367 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1363C THR* 3.0 38.3 + - + +
1364C ARG* 3.7 15.5 - - - +
1365C ARG 3.3 0.4 - - - -
1366C LEU* 1.3 77.7 - - + +
1368C TYR* 1.3 56.2 + - - +
1370C LEU* 4.2 6.7 - - - -
1371C ASN* 2.7 50.4 + - - +
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Residues in contact with TYR1368 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1141C GLY 3.6 13.0 + - - -
1142C GLN* 3.4 44.0 - - + +
1143C GLY* 3.7 9.2 - - - +
1364C ARG 3.1 11.3 + - - +
1365C ARG 2.9 9.2 + - - +
1367C GLN* 1.3 79.5 - - - +
1369C HIS* 1.3 109.8 + + - +
1371C ASN* 3.4 4.5 + - - +
1372C ARG* 3.3 52.8 + - + +
----------------------------------------------------------
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Residues in contact with HIS1369 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1142C GLN* 3.0 34.0 + - + -
1365C ARG* 2.9 24.5 + - + +
1366C LEU* 4.3 7.2 - - + +
1368C TYR* 1.3 96.8 - + - +
1370C LEU* 1.3 70.1 + - - +
1372C ARG* 3.2 20.7 + - - +
1373C ILE* 2.9 32.1 + - + +
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Residues in contact with LEU1370 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1366C LEU 2.8 24.7 + - - +
1367C GLN* 3.7 7.4 - - - +
1369C HIS* 1.3 70.5 - - - +
1371C ASN* 1.3 56.9 + - - +
1372C ARG 2.4 15.1 + - - -
1373C ILE* 2.6 31.6 + - + +
1374C GLU* 2.9 49.9 + - + +
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Residues in contact with ASN1371 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1367C GLN* 2.7 43.6 + - - +
1368C TYR* 3.4 5.7 + - - +
1370C LEU* 1.3 74.2 - - - +
1372C ARG* 1.3 59.1 + - + +
1374C GLU* 3.4 20.8 - - - +
1375C LYS* 3.2 38.7 + - - +
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Residues in contact with ARG1372 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1368C TYR* 3.3 53.4 + - + +
1369C HIS* 3.2 30.1 + - - +
1370C LEU 2.4 6.5 + - - -
1371C ASN* 1.3 75.5 - - + +
1373C ILE* 1.3 67.0 + - - +
1374C GLU 3.3 0.7 - - - -
1375C LYS* 3.4 6.6 + - + +
1376C ARG* 2.9 25.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE1373 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1369C HIS* 2.9 28.4 + - + +
1370C LEU* 2.6 24.2 + - + +
1372C ARG* 1.3 75.3 - - + +
1374C GLU* 1.3 51.7 + - + +
1376C ARG* 3.2 8.0 + - + +
1377C LEU* 2.7 53.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU1374 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1370C LEU* 2.9 47.9 + - + +
1371C ASN* 3.4 22.1 - - - +
1373C ILE* 1.3 76.8 - - + +
1375C LYS* 1.3 65.6 + - + +
1377C LEU* 2.9 12.4 + - + +
1378C HIS* 2.8 24.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS1375 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1371C ASN* 3.2 25.2 + - - +
1372C ARG* 3.4 8.5 + - + +
1374C GLU* 1.3 79.5 - - + +
1376C ARG* 1.3 60.0 + - - +
1378C HIS* 3.4 18.0 - - - +
1379C ILE* 3.4 15.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG1376 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1372C ARG 2.9 17.5 + - - +
1373C ILE* 3.4 7.4 - - + +
1375C LYS* 1.3 74.4 - - - +
1377C LEU* 1.3 69.8 + - + +
1378C HIS 3.0 1.8 - - - -
1379C ILE* 2.7 32.6 + - - +
1380C LEU* 2.9 45.9 + - + +
1383C LEU* 5.0 3.6 - - - +
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Residues in contact with LEU1377 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1373C ILE* 2.7 38.4 + - + +
1374C GLU* 3.5 10.3 - - + +
1376C ARG* 1.3 73.9 - - + +
1378C HIS* 1.3 61.3 + - - +
1380C LEU* 3.3 19.8 + - + +
1381C ALA* 3.0 22.3 + - - +
----------------------------------------------------------
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Residues in contact with HIS1378 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1374C GLU 2.8 11.3 + - - +
1375C LYS* 3.4 15.0 - - - +
1376C ARG 3.0 0.2 - - - -
1377C LEU* 1.3 77.9 - - - +
1379C ILE* 1.3 74.6 + - + +
1381C ALA* 3.3 20.6 - - + +
1382C GLY* 3.6 4.3 + - - -
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Residues in contact with ILE1379 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1375C LYS 3.4 14.3 + - - +
1376C ARG* 2.7 31.3 + - - +
1378C HIS* 1.3 87.6 - - + +
1380C LEU* 1.3 64.4 + - - +
1381C ALA 3.2 0.3 + - - -
1382C GLY* 3.5 1.9 + - - -
1383C LEU* 3.0 40.2 + - + +
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Residues in contact with LEU1380 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1376C ARG* 2.9 56.2 + - + +
1377C LEU* 3.6 23.6 - - + +
1379C ILE* 1.3 73.4 - - - +
1381C ALA* 1.3 69.9 + - - +
1383C LEU* 3.4 18.2 - - + +
1384C LEU* 3.1 30.1 + - + +
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Residues in contact with ALA1381 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1377C LEU 3.0 14.0 + - - +
1378C HIS* 3.3 18.4 - - + +
1379C ILE 3.1 0.2 - - - -
1380C LEU* 1.3 77.8 - - - +
1382C GLY* 1.3 56.8 + - - +
1383C LEU 2.6 13.5 + - - -
1384C LEU* 3.1 22.6 + - - +
1385C ILE* 3.3 11.2 + - + +
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Residues in contact with GLY1382 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1378C HIS 3.6 4.3 + - - -
1379C ILE 3.5 6.1 + - - -
1381C ALA* 1.3 78.9 - - - +
1383C LEU* 1.3 61.3 + - - +
1385C ILE* 3.5 28.1 - - - +
1386C ALA* 3.6 8.0 + - - +
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Residues in contact with LEU1383 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1376C ARG* 5.0 4.5 - - - +
1379C ILE* 3.0 39.0 + - + +
1380C LEU* 3.4 24.5 - - + +
1381C ALA 2.6 7.1 + - - -
1382C GLY* 1.3 71.0 - - - +
1384C LEU* 1.3 58.7 + - - +
1385C ILE 3.0 3.8 - - - -
1386C ALA* 2.8 25.6 + - + +
1387C TYR* 3.3 26.8 + - + -
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Residues in contact with LEU1384 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1380C LEU* 3.2 15.5 - - + +
1381C ALA* 3.3 22.7 - - - +
1383C LEU* 1.3 76.4 - - + +
1385C ILE* 1.3 63.3 + - + +
1386C ALA 3.3 0.4 - - - -
1387C TYR* 3.7 27.7 + - + +
1388C LEU* 3.8 13.9 + - - +
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Residues in contact with ILE1385 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1381C ALA* 3.3 11.0 + - + +
1382C GLY* 3.5 27.4 - - - +
1383C LEU 3.0 0.2 - - - -
1384C LEU* 1.3 81.9 - - + +
1386C ALA* 1.3 63.8 + - + +
1388C LEU* 3.1 32.8 - - + +
1389C ASP* 4.2 1.6 + - - +
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Residues in contact with ALA1386 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1382C GLY 3.6 6.4 + - - +
1383C LEU* 2.8 13.2 + - + +
1385C ILE* 1.3 80.3 - - + +
1387C TYR* 1.3 68.0 + - + +
1388C LEU 2.8 4.3 + - - -
1389C ASP* 3.0 4.8 + - - +
1390C ILE* 2.8 26.0 + - + -
1393C VAL* 3.6 28.0 - - + -
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Residues in contact with TYR1387 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1398A ARG* 4.6 18.7 + - - -
1383C LEU* 3.3 31.4 + - + -
1384C LEU* 3.7 20.2 - - + +
1385C ILE 3.4 0.4 - - - -
1386C ALA* 1.3 80.0 - - + +
1388C LEU* 1.3 66.6 + - - +
1390C ILE* 3.8 20.3 - - + +
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Residues in contact with LEU1388 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1398A ARG* 5.2 1.4 + - - -
1384C LEU 3.8 10.7 + - - +
1385C ILE* 3.1 29.6 - - + +
1386C ALA 2.8 0.4 + - - -
1387C TYR* 1.3 82.9 - - - +
1389C ASP* 1.3 62.3 + - + +
1390C ILE* 3.3 5.2 + - - +
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Residues in contact with ASP1389 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1385C ILE 4.2 1.8 + - - +
1386C ALA* 3.0 6.4 + - - -
1388C LEU* 1.3 79.2 - - + +
1390C ILE* 1.3 61.8 + - - +
1391C ASP* 3.9 4.5 + - - +
1392C THR* 2.5 42.1 + - - +
1393C VAL* 3.3 17.7 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il