Contacts of the strand formed by residues 151 - 164 (chain A) in PDB entry 3AA6
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 151 (chain A).
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Specific contacts
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Residue Dist Surf HB Arom Phob DC
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147A SER* 4.1 1.1 - - - -
148A ILE 2.8 39.2 + - - +
149A ASP* 4.1 10.4 - - - +
150A GLY* 1.3 78.8 - - - +
152A GLN* 1.3 63.4 + - - +
153A THR* 3.1 6.7 + - - +
180A THR* 3.3 31.8 - - + +
181A ILE 5.1 3.6 - - - +
182A THR* 3.8 19.2 - - + +
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Residues in contact with GLN 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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114A GLU* 4.0 7.3 - - - +
116A ALA* 4.8 9.7 - - - +
117A LEU* 3.2 41.6 - - + +
146A LYS 3.8 2.5 - - - -
147A SER* 3.6 23.8 + - - -
150A GLY 3.9 8.1 + - - +
151A GLN* 1.3 69.1 - - - +
153A THR* 1.3 60.0 + - - +
180A THR* 3.8 0.3 - - - -
181A ILE* 3.0 45.5 + - + +
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Residues in contact with THR 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117A LEU* 3.7 2.6 - - - +
144A TYR 3.8 0.5 - - - +
145A GLY* 3.5 4.7 - - - -
146A LYS 2.8 40.0 + - - -
148A ILE* 3.8 23.2 - - + +
151A GLN* 3.1 13.9 + - - +
152A GLN* 1.3 73.8 + - - +
154A ILE* 1.3 66.9 + - - +
155A ILE* 3.8 24.1 + - + +
178A LYS* 4.5 7.9 - - + -
179A PHE 3.3 16.2 - - - +
180A THR* 4.1 17.3 + - - +
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Residues in contact with ILE 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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117A LEU* 4.6 6.5 - - + -
120A TRP* 4.2 8.7 - - + +
121A ARG* 3.8 33.0 - - + +
124A CYS* 4.0 23.6 - - + -
143A VAL* 3.7 19.7 - - + -
144A TYR 3.5 8.7 - - - +
145A GLY* 4.1 10.1 - - - -
153A THR* 1.3 73.4 - - - +
155A ILE* 1.3 65.7 + - - +
156A ALA* 4.9 2.2 - - + +
177A TRP 3.6 1.2 - - - +
178A LYS* 3.3 3.5 - - - -
179A PHE* 2.8 55.4 + - + +
181A ILE* 4.3 19.5 - - + +
228A PHE* 4.9 2.9 - - + -
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Residues in contact with ILE 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79A HIS* 3.7 47.3 - - + +
142A THR 3.7 1.6 - - - +
143A VAL* 3.3 4.7 - - - -
144A TYR* 2.8 48.6 + - + +
146A LYS* 4.1 15.7 - - + -
148A ILE* 4.0 24.2 - - + -
153A THR* 3.8 15.0 - - + +
154A ILE* 1.3 77.5 - - - +
156A ALA* 1.3 62.0 + - - +
157A CYS* 4.2 3.4 - - - -
176A GLU* 4.2 8.3 - - + -
177A TRP 3.4 2.9 - - - +
178A LYS* 4.0 23.6 - - + -
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Residues in contact with ALA 156 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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124A CYS* 6.5 0.2 - - + -
128A LEU* 3.5 29.2 - - + -
142A THR 3.7 3.8 - - - -
143A VAL* 4.3 8.3 - - + +
154A ILE* 4.1 3.1 - - + -
155A ILE* 1.3 74.4 - - - +
157A CYS* 1.3 60.7 + - - +
158A ILE* 5.1 1.3 - - + -
175A SER 3.9 0.5 - - - +
176A GLU* 3.3 3.6 - - - +
177A TRP* 2.7 52.2 + - + +
179A PHE* 4.6 9.0 - - + -
232A ILE* 4.9 2.2 - - + -
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Residues in contact with CYS 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A PHE* 3.7 19.5 - - + -
75A LEU* 3.5 12.7 - - + +
77A THR* 4.2 7.0 - - + -
79A HIS* 3.8 18.4 - - - -
128A LEU* 4.5 0.4 - - - +
141A CYS* 3.1 8.3 - - - +
142A THR 2.9 35.7 + - - +
144A TYR* 4.0 14.1 - - + -
155A ILE* 4.2 3.1 - - - -
156A ALA* 1.3 77.4 - - - +
158A ILE* 1.3 63.6 + - - +
175A SER 3.4 4.3 - - - -
176A GLU* 3.7 25.6 - - - -
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Residues in contact with ILE 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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62A PHE* 3.6 3.8 - - - -
75A LEU* 4.1 1.1 - - - -
128A LEU* 3.9 23.1 - - + -
131A TYR* 3.9 24.2 - - + -
132A VAL* 3.9 18.2 - - + -
136A TYR* 3.8 31.9 - - + +
140A PHE 3.4 6.5 - - - +
156A ALA* 5.1 2.0 - - + +
157A CYS* 1.3 80.7 - - - +
159A GLU* 1.3 65.9 + - - +
173A TRP* 4.4 1.8 - - - +
174A ARG* 3.3 5.5 - - - -
175A SER* 2.9 50.4 + - - +
177A TRP* 4.8 4.9 - - + -
232A ILE* 4.3 4.0 - - + -
236A GLU* 3.8 12.3 - - - +
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Residues in contact with GLU 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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61A GLN 4.0 0.7 - - - +
62A PHE* 3.3 33.7 - - + +
64A PRO* 3.4 22.8 - - - +
75A LEU* 3.8 12.5 - - + +
139A GLY* 3.2 3.5 - - - -
140A PHE* 2.8 40.3 + - - -
158A ILE* 1.3 78.8 - - - +
160A SER* 1.3 73.5 + - - +
161A HIS* 2.7 32.0 + - - +
172A ARG* 2.8 28.0 + - - +
173A TRP* 3.5 9.0 - - - +
174A ARG* 4.6 0.7 - - + -
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Residues in contact with SER 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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136A TYR* 3.5 31.3 - - - +
137A PRO* 4.2 4.9 - - - +
138A ASN 4.2 7.1 + - - -
139A GLY* 3.9 9.7 + - - -
159A GLU* 1.3 82.4 - - - +
161A HIS* 1.3 63.9 + - - +
162A GLN* 5.3 1.0 + - - -
172A ARG* 3.4 1.2 - - - -
173A TRP* 2.8 36.9 + - - +
243B LEU* 2.8 27.3 + - - +
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Residues in contact with HIS 161 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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64A PRO* 4.0 18.8 - - + -
138A ASN* 4.6 11.5 + - - +
140A PHE* 5.4 5.6 - + - -
159A GLU* 2.7 28.3 + - - +
160A SER* 1.3 74.5 + - - +
162A GLN* 1.3 79.2 + - - +
163A PHE* 3.3 48.3 - + + -
171A GLY 3.2 15.0 - - - +
172A ARG* 3.3 16.6 + - - +
243B LEU* 4.1 2.2 - - - -
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Residues in contact with GLN 162 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A PRO* 3.8 21.6 - - - +
138A ASN* 3.6 23.7 + - - +
160A SER* 5.3 1.4 + - - -
161A HIS* 1.3 83.7 + - - +
163A PHE* 1.3 62.7 + - - +
164A GLN* 4.0 9.2 - - + +
169A TRP* 3.8 24.1 - - + -
170A ASN* 3.5 2.8 - - - -
171A GLY 2.8 31.2 + - - -
239B ILE* 5.6 0.9 - - + +
242B GLY* 3.8 21.1 + - - +
243B LEU* 3.9 12.8 - - + +
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Residues in contact with PHE 163 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A PRO* 3.7 12.3 - - + -
27A GLY* 3.4 35.9 - - - +
161A HIS* 3.3 48.9 - + + -
162A GLN* 1.3 80.5 + - - +
164A GLN* 1.3 65.7 + - - +
165A PRO* 3.6 10.3 - - + +
170A ASN* 3.2 20.9 - - + +
171A GLY 4.0 0.7 - - - -
172A ARG* 3.5 16.2 - - - -
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Residues in contact with GLN 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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162A GLN* 4.0 8.9 - - + +
163A PHE* 1.3 80.0 - - - +
165A PRO* 1.3 62.1 - - - +
166A LYS* 3.2 3.1 - - - -
167A ASN* 3.0 39.6 + - - +
168A PHE 3.1 7.8 + - - -
169A TRP* 2.9 67.3 + - + +
170A ASN* 3.4 0.2 + - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il