Contacts of the helix formed by residues 155 - 184 (chain C) in PDB entry 3AG2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 155 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150C SER* 2.9 21.5 + - - +
151C LEU* 4.5 1.9 + - - +
153C GLU* 4.6 7.6 - - + +
154C GLY* 1.3 72.3 - - - +
156C ARG* 1.3 64.4 + - - +
157C LYS* 3.4 7.1 + - - +
158C HIS* 2.5 49.5 + - - +
159C MET* 3.1 23.6 + - - +
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Residues in contact with ARG 156 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154C GLY 3.5 6.3 + - - +
155C ASP* 1.3 72.9 + - - +
157C LYS* 1.3 67.1 + - + +
159C MET* 3.3 2.4 + - - +
160C LEU* 3.0 37.9 + - + +
222C GLN* 2.9 44.1 + - - +
223C LEU* 2.8 38.6 + - - +
225C PHE* 3.3 45.8 - - - +
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Residues in contact with LYS 157 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155C ASP* 3.4 4.8 + - - +
156C ARG* 1.3 83.3 - - + +
158C HIS* 1.3 85.7 + - + +
160C LEU* 3.4 7.9 + - - +
161C GLN* 3.0 28.7 + - + +
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Residues in contact with HIS 158 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146C TRP* 4.0 16.9 - + + +
150C SER* 3.6 16.2 - - - +
155C ASP* 2.5 39.2 + - - +
157C LYS* 1.3 101.0 + - - +
159C MET* 1.3 61.5 + - - +
161C GLN* 3.3 24.8 - - - +
162C ALA* 2.9 32.6 + - - +
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Residues in contact with MET 159 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147C ALA* 3.6 21.2 - - - +
150C SER* 3.5 11.1 - - - -
151C LEU* 3.6 26.5 - - + +
155C ASP 3.1 20.7 + - - +
156C ARG 3.5 4.7 - - - +
157C LYS 3.3 0.2 - - - -
158C HIS* 1.3 77.0 - - - +
160C LEU* 1.3 58.7 + - - +
162C ALA* 3.8 1.2 - - - +
163C LEU* 2.8 49.6 + - + +
222C GLN* 3.7 40.6 - - + +
227C PHE* 4.2 5.6 - - + -
235C PHE* 3.7 30.3 - - + -
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Residues in contact with LEU 160 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156C ARG* 3.0 45.7 + - + +
157C LYS* 3.7 7.0 - - - +
159C MET* 1.3 77.9 - - - +
161C GLN* 1.3 58.2 + - - +
163C LEU* 4.5 0.4 - - - -
164C PHE* 2.9 32.1 + - - +
219C PHE* 3.4 38.6 - - + +
222C GLN* 3.6 24.7 - - + -
223C LEU* 3.8 29.8 - - + -
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Residues in contact with GLN 161 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146C TRP* 3.7 17.7 - - + -
157C LYS* 3.0 18.8 + - + +
158C HIS* 3.3 28.8 - - - +
159C MET 3.3 0.2 - - - -
160C LEU* 1.3 76.2 - - - +
162C ALA* 1.3 63.7 + - - +
164C PHE* 3.3 7.8 + - + +
165C ILE* 3.0 40.4 + - + +
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Residues in contact with ALA 162 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143C SER* 3.5 4.3 - - - +
146C TRP* 3.4 38.8 - - + -
147C ALA* 3.5 25.6 - - - +
158C HIS 2.9 21.2 + - - +
161C GLN* 1.3 72.7 - - - +
163C LEU* 1.3 58.5 + - - +
165C ILE* 3.3 4.9 + - - +
166C THR* 2.9 31.7 + - - -
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Residues in contact with LEU 163 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C ILE* 4.9 1.8 - - + -
147C ALA* 3.9 5.8 - - + +
159C MET* 2.8 50.7 + - + +
160C LEU 4.0 2.5 - - - +
162C ALA* 1.3 72.3 - - - +
164C PHE* 1.3 57.5 + - - +
166C THR* 3.2 11.0 + - - -
167C ILE* 3.0 37.1 + - + +
215C LEU* 3.9 38.1 - - + +
218C CYS* 4.0 7.4 - - + -
219C PHE* 3.6 41.7 - - + +
222C GLN* 5.0 0.4 - - + -
235C PHE* 4.4 11.7 - - + -
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Residues in contact with PHE 164 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160C LEU 2.9 19.0 + - - +
161C GLN* 3.6 7.4 - - + +
163C LEU* 1.3 73.9 - - - +
165C ILE* 1.3 69.3 + - + +
167C ILE* 3.4 10.1 + - + +
168C THR* 2.9 53.1 + - + -
219C PHE* 3.9 23.9 - + + -
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Residues in contact with ILE 165 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143C SER* 3.9 13.7 - - - -
146C TRP* 3.8 24.2 - - + -
161C GLN* 3.0 33.8 + - + +
162C ALA 3.3 6.7 + - - +
164C PHE* 1.3 82.2 - - + +
166C THR* 1.3 65.3 + - - +
168C THR* 3.3 6.4 + - - -
169C LEU* 3.0 42.1 + - + +
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Residues in contact with THR 166 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140C SER* 3.6 23.5 - - - +
143C SER* 2.9 16.4 + - - -
144C ILE* 3.2 27.2 + - + +
162C ALA 2.9 19.2 + - - -
163C LEU* 3.4 12.4 - - - -
165C ILE* 1.3 76.7 - - - +
167C ILE* 1.3 62.3 + - - +
169C LEU* 3.3 4.0 + - - +
170C GLY* 3.0 18.2 + - - -
215C LEU* 3.6 24.0 - - + -
242C TRP* 3.9 12.2 - - - +
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Residues in contact with ILE 167 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163C LEU* 3.0 22.4 + - + +
164C PHE* 3.8 9.9 - - + +
165C ILE 3.3 0.2 - - - -
166C THR* 1.3 75.1 - - - +
168C THR* 1.3 60.0 + - - +
170C GLY* 3.0 3.3 + - - +
171C VAL* 2.8 39.2 + - + +
212C SER* 4.7 6.9 + - - +
215C LEU* 3.7 49.4 - - + +
216C ILE* 3.7 28.7 - - + -
219C PHE* 3.9 22.7 - - + -
242C TRP* 6.2 0.2 - - - -
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Residues in contact with THR 168 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164C PHE* 2.9 46.3 + - + -
165C ILE* 3.6 7.6 - - - +
167C ILE* 1.3 77.1 - - - +
169C LEU* 1.3 62.6 + - + +
171C VAL* 3.3 8.0 + - - +
172C TYR* 2.8 30.4 + - + +
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Residues in contact with LEU 169 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136C VAL* 3.2 38.5 - - + +
137C LEU* 5.5 0.2 - - - -
139C ALA* 4.1 11.9 - - + -
140C SER* 3.7 37.9 - - - +
143C SER* 4.1 2.2 - - - +
165C ILE* 3.0 39.3 + - + +
166C THR 3.6 4.3 - - - +
168C THR* 1.3 80.9 - - + +
170C GLY* 1.3 61.9 + - - +
172C TYR* 3.1 10.3 + - + -
173C PHE* 2.9 20.4 + - - +
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Residues in contact with GLY 170 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C LEU* 5.0 0.4 - - - -
166C THR 3.0 9.4 + - - -
167C ILE* 3.0 7.2 + - - -
169C LEU* 1.3 75.3 - - - +
171C VAL* 1.3 61.4 + - - +
173C PHE* 3.3 8.2 + - - +
174C THR* 3.1 25.3 + - - -
208C VAL* 3.9 1.9 - - - +
212C SER* 3.9 9.9 - - - -
242C TRP* 3.7 32.2 - - - -
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Residues in contact with VAL 171 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167C ILE* 2.8 31.2 + - + +
168C THR* 3.6 7.4 - - - +
170C GLY* 1.3 75.0 - - - +
172C TYR* 1.3 64.7 + - - +
174C THR* 3.2 7.8 + - - -
175C LEU* 2.9 41.2 + - + +
212C SER* 5.2 7.9 - - - +
216C ILE* 5.6 4.5 - - + -
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Residues in contact with TYR 172 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132C LEU* 3.7 22.1 - - + +
136C VAL* 3.6 31.2 - - + -
168C THR* 2.8 23.1 + - + +
169C LEU* 3.1 15.5 + - + +
171C VAL* 1.3 74.4 - - - +
173C PHE* 1.3 55.6 + - - +
175C LEU* 3.3 11.5 + - + +
176C LEU* 2.8 59.3 + - + +
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Residues in contact with PHE 173 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C ASN* 3.5 43.1 - - + +
136C VAL* 4.0 9.8 - - + +
137C LEU* 3.6 33.9 - - + -
169C LEU 2.9 13.3 + - - +
170C GLY 3.5 7.4 - - - +
171C VAL 3.3 0.2 - - - -
172C TYR* 1.3 76.6 - - - +
174C THR* 1.3 57.1 + - - +
176C LEU* 3.3 3.5 + - - +
177C GLN* 2.8 50.5 + - + +
204C HIS* 3.7 21.3 - + - -
205C GLY* 5.0 5.4 - - - -
208C VAL* 3.8 31.6 - - + -
249C TRP* 3.7 22.9 - + - -
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Residues in contact with THR 174 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170C GLY 3.1 13.7 + - - -
171C VAL* 3.2 12.0 + - - -
173C PHE* 1.3 77.5 - - - +
175C LEU* 1.3 65.9 + - + +
177C GLN* 3.3 4.8 + - - +
178C ALA* 2.9 30.2 + - + +
205C GLY 5.2 0.8 + - - +
208C VAL* 3.5 18.4 - - - +
209C ILE* 4.1 29.5 - - + +
212C SER* 5.1 1.0 + - - -
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Residues in contact with LEU 175 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171C VAL* 2.9 36.2 + - + +
172C TYR* 3.6 11.4 - - + +
174C THR* 1.3 79.2 - - + +
176C LEU* 1.3 65.8 + - - +
178C ALA* 3.3 8.3 + - + +
179C SER* 2.9 24.1 + - - -
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Residues in contact with LEU 176 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129C VAL* 4.2 16.1 - - + +
132C LEU* 3.8 35.4 - - + -
133C ASN* 3.3 26.5 - - - +
136C VAL* 4.5 4.3 - - + -
172C TYR* 2.8 59.7 + - + +
173C PHE* 3.6 1.8 - - - +
175C LEU* 1.3 72.0 - - - +
177C GLN* 1.3 58.5 + - - +
179C SER* 3.2 7.3 + - - -
180C GLU* 2.8 33.7 + - - +
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Residues in contact with GLN 177 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133C ASN* 3.2 20.0 + - - +
173C PHE* 2.8 34.4 + - + +
174C THR* 3.7 4.9 - - - +
175C LEU 3.2 0.2 - - - -
176C LEU* 1.3 76.9 - - - +
178C ALA* 1.3 59.7 + - - +
180C GLU* 3.2 13.9 + - - +
181C TYR* 2.9 54.8 + - + +
201C THR* 4.2 15.9 + - - +
204C HIS* 5.4 0.8 + - - -
205C GLY* 5.8 4.7 - - - -
249C TRP* 3.4 21.0 - - - -
257C TYR* 3.2 25.3 + - - -
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Residues in contact with ALA 178 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174C THR* 2.9 18.8 + - + +
175C LEU* 3.7 10.5 - - + +
177C GLN* 1.3 77.8 - - - +
179C SER* 1.3 62.7 + - - +
181C TYR* 3.3 10.8 + - - +
182C TYR* 3.1 22.5 + - - +
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Residues in contact with SER 179 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175C LEU 2.9 17.6 + - - -
176C LEU* 3.6 7.6 - - - -
178C ALA* 1.3 77.9 - - - +
180C GLU* 1.3 62.0 + - - +
182C TYR* 3.2 6.5 + - - +
183C GLU* 3.0 34.9 + - - +
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Residues in contact with GLU 180 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C LEU* 3.3 38.9 - - + +
129C VAL* 3.4 38.8 - - + +
130C PRO* 3.4 20.9 - - - +
133C ASN* 4.7 0.2 + - - -
176C LEU 2.8 22.9 + - - +
177C GLN* 3.6 20.0 - - - +
179C SER* 1.3 73.4 - - - +
181C TYR* 1.3 61.2 + - + +
183C GLU* 3.7 6.8 - - - +
184C ALA* 2.8 32.8 + - - +
197C PHE* 6.4 0.4 - - + -
257C TYR* 4.5 2.1 - - - +
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Residues in contact with TYR 181 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177C GLN* 2.9 37.2 + - + +
178C ALA* 3.5 13.5 - - - +
179C SER 3.2 0.2 - - - -
180C GLU* 1.3 81.0 - - + +
182C TYR* 1.3 62.4 + - - +
184C ALA* 3.5 13.0 + - - +
186C PHE 5.3 0.3 - - - +
197C PHE* 4.2 7.6 - + - -
198C PHE* 3.7 39.7 + + + -
201C THR* 2.6 31.5 + - - -
202C GLY* 3.1 26.3 + - - -
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Residues in contact with TYR 182 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178C ALA 3.1 12.5 + - - +
179C SER* 3.2 9.6 + - - +
181C TYR* 1.3 78.8 - - - +
183C GLU* 1.3 78.7 + - - +
184C ALA 3.6 4.0 + - - +
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Residues in contact with GLU 183 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C LEU* 5.5 2.0 - - + +
179C SER* 3.0 31.3 + - - +
180C GLU* 4.0 7.2 - - - +
182C TYR* 1.3 94.4 - - + +
184C ALA* 1.3 67.6 + - - +
185C PRO* 3.2 7.1 - - - +
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Residues in contact with ALA 184 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124C LEU* 4.3 10.3 - - + -
180C GLU 2.8 18.1 + - - +
181C TYR 3.8 9.1 - - - +
182C TYR 3.4 6.1 - - - +
183C GLU* 1.3 77.9 - - - +
185C PRO* 1.3 69.8 - - + +
186C PHE* 3.4 31.0 + - + +
187C THR* 5.4 1.2 - - - +
197C PHE* 5.7 0.7 - - + -
198C PHE* 4.1 14.4 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il