Contacts of the helix formed by residues 232 - 256 (chain C) in PDB entry 3AG2
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with HIS 232 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76C GLN* 4.4 3.0 - - - +
148C HIS* 3.6 20.6 + + - -
151C LEU* 3.5 26.2 - - + +
152C MET* 3.9 14.3 - - + +
227C PHE* 3.5 26.9 - - + -
228C THR 2.9 18.2 + - - -
229C SER 3.3 25.6 - - - -
230C ASN* 4.0 9.1 + - - -
231C HIS* 1.3 75.3 - - - +
233C PHE* 1.3 68.7 + - - +
234C GLY 3.2 2.7 - - - -
235C PHE* 3.2 6.2 + + + -
236C GLU* 3.1 34.1 + - + +
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Residues in contact with PHE 233 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71C HIS* 6.0 2.5 - - - +
76C GLN* 3.6 23.0 - - + +
79C LEU* 3.4 52.7 - - + -
80C ARG* 3.6 36.8 - - + -
83C MET* 4.0 9.6 - - + -
231C HIS* 4.0 6.3 - - + +
232C HIS* 1.3 77.7 - - - +
234C GLY* 1.3 66.5 + - - +
236C GLU* 3.0 13.2 + - + -
237C ALA* 2.8 47.6 + - + +
240C TRP* 3.8 15.7 - + - -
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Residues in contact with GLY 234 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214C PHE* 3.5 18.1 - - - -
218C CYS* 3.6 7.5 - - - -
221C ARG* 4.3 18.1 - - - +
227C PHE* 4.5 2.6 - - - -
232C HIS 3.2 0.6 - - - -
233C PHE* 1.3 82.0 - - - +
235C PHE* 1.3 55.9 + - - +
237C ALA* 3.5 4.2 + - - -
238C ALA* 3.0 25.3 + - - +
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Residues in contact with PHE 235 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C ILE* 3.8 25.5 - - + +
147C ALA* 3.9 11.0 - - + -
148C HIS* 3.4 60.3 - + + -
151C LEU* 4.2 10.3 - - + -
159C MET* 3.7 25.6 - - + -
163C LEU* 4.4 10.3 - - + -
215C LEU* 5.4 2.2 - - + -
218C CYS* 3.7 20.9 - - + -
227C PHE* 3.9 20.2 - - + -
232C HIS* 3.2 14.8 + + + +
233C PHE 3.2 0.6 - - - -
234C GLY* 1.3 74.6 - - - +
236C GLU* 1.3 67.7 + - - +
238C ALA* 3.3 1.9 + - - +
239C ALA* 3.0 25.9 + - + +
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Residues in contact with GLU 236 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76C GLN* 4.1 1.9 + - - -
80C ARG* 2.6 44.6 + - - -
148C HIS* 4.1 20.1 + - + +
230C ASN 5.8 0.5 - - - +
232C HIS* 3.1 33.3 + - + +
233C PHE* 3.0 20.1 + - + +
235C PHE* 1.3 78.7 - - - +
237C ALA* 1.3 58.0 + - - +
239C ALA* 3.1 5.2 + - - +
240C TRP* 2.9 49.1 + - + +
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Residues in contact with ALA 237 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C MET* 3.7 27.8 - - + +
214C PHE* 3.9 12.1 - - + -
233C PHE* 2.8 43.0 + - + +
234C GLY* 3.8 4.5 - - - +
236C GLU* 1.3 73.3 - - - +
238C ALA* 1.3 63.4 + - - +
240C TRP* 3.4 7.1 + - - +
241C TYR* 3.0 25.5 + - - +
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Residues in contact with ALA 238 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
211C GLY* 5.4 1.6 - - - +
214C PHE* 3.5 36.9 - - + +
215C LEU* 3.9 20.5 - - + +
218C CYS* 3.8 13.0 - - - -
234C GLY 3.0 18.6 + - - +
235C PHE 3.8 3.1 - - - +
236C GLU 3.3 0.2 - - - -
237C ALA* 1.3 76.5 - - - +
239C ALA* 1.4 56.4 + - - +
241C TYR* 3.5 3.2 + - - +
242C TRP* 2.9 30.2 + - - +
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Residues in contact with ALA 239 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144C ILE* 3.6 27.7 - - + +
148C HIS* 5.9 2.7 - - + +
235C PHE* 3.0 24.7 + - + +
236C GLU* 3.1 11.2 + - - +
238C ALA* 1.4 74.6 - - - +
240C TRP* 1.3 62.2 + - + +
242C TRP* 3.2 1.9 + - - +
243C HIS* 2.9 44.6 + - + +
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Residues in contact with TRP 240 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80C ARG* 3.7 53.2 - - + -
83C MET* 3.9 18.8 - - + -
84C ILE* 3.7 22.4 - - + -
87C ILE* 3.8 15.8 - - + +
233C PHE* 3.8 23.6 - + - -
236C GLU* 2.9 33.0 + - + +
237C ALA* 3.8 5.6 - - - +
239C ALA* 1.3 78.6 - - + +
241C TYR* 1.3 59.4 + - - +
243C HIS* 3.3 12.7 + + - +
244C PHE* 2.9 27.7 + - - +
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Residues in contact with TYR 241 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83C MET* 3.8 21.8 - - + -
86C PHE* 3.9 13.3 - + - -
87C ILE* 3.9 12.5 - - + +
90C GLU* 3.3 18.4 + - + -
207C HIS* 2.9 48.6 - + - -
210C ILE* 3.7 22.5 - - + +
211C GLY* 3.8 24.0 - - - -
214C PHE* 4.7 8.1 - + + -
237C ALA 3.0 17.7 + - - +
238C ALA* 3.6 6.7 - - - +
240C TRP* 1.3 76.4 - - - +
242C TRP* 1.3 56.7 + - - +
244C PHE* 3.3 17.3 + + - +
245C VAL* 2.9 38.5 + - + +
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Residues in contact with TRP 242 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C LEU* 4.0 13.6 + - + +
140C SER* 2.7 48.6 + - - -
141C GLY* 4.6 3.8 - - - -
144C ILE* 4.2 17.0 - - + -
166C THR* 3.9 10.6 - - + +
170C GLY* 3.7 23.3 - - - -
208C VAL* 3.7 21.3 - - + -
211C GLY* 3.8 14.1 - - - -
212C SER* 3.6 36.8 - - - -
215C LEU* 3.8 22.2 - - + -
238C ALA 2.9 19.2 + - - +
239C ALA 3.2 5.6 + - - +
241C TYR* 1.3 78.0 - - - +
243C HIS* 1.3 58.2 + - - +
245C VAL* 3.2 11.9 + - + +
246C ASP* 3.0 29.1 + - + +
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Residues in contact with HIS 243 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141C GLY* 3.7 31.8 - - - -
144C ILE* 3.9 17.5 - - + +
145C THR* 4.0 9.6 + - - -
239C ALA* 2.9 30.5 + - + +
240C TRP* 3.3 13.4 + + - +
242C TRP* 1.3 73.1 - - - +
244C PHE* 1.3 60.4 + - - +
246C ASP* 3.1 9.6 + - - +
247C VAL* 2.8 39.0 + - + +
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Residues in contact with PHE 244 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87C ILE* 3.8 19.3 - - + -
90C GLU* 3.5 24.7 - - + -
91C VAL* 3.7 37.5 - - + -
94C PHE* 4.0 13.9 - + - -
207C HIS* 3.9 23.8 - + + -
240C TRP 2.9 13.6 + - - +
241C TYR* 3.3 27.1 - + - +
243C HIS* 1.3 76.5 - - - +
245C VAL* 1.3 72.8 + - + +
247C VAL* 3.2 6.1 + - + +
248C VAL* 2.9 49.4 + - + +
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Residues in contact with VAL 245 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C LEU* 4.6 5.6 - - + -
204C HIS* 2.9 29.9 + - + +
207C HIS* 3.8 29.8 - - + +
208C VAL* 3.4 35.4 - - + +
241C TYR* 2.9 27.2 + - + +
242C TRP* 3.2 22.6 + - + +
244C PHE* 1.3 87.4 - - + +
246C ASP* 1.3 61.4 + - - +
248C VAL* 4.7 3.1 - - - -
249C TRP* 3.1 8.3 + - - +
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Residues in contact with ASP 246 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137C LEU* 3.6 43.5 - - + +
138C LEU* 3.7 27.0 + - - +
141C GLY* 4.7 7.7 - - - -
242C TRP* 3.0 16.6 + - + +
243C HIS* 3.3 16.9 + - - +
245C VAL* 1.3 77.7 - - - +
247C VAL* 1.3 66.2 + - + +
249C TRP* 3.2 5.2 + - - +
250C LEU* 3.0 26.9 + - - +
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Residues in contact with VAL 247 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
243C HIS* 2.8 26.4 + - + +
244C PHE* 3.9 6.5 - - + +
246C ASP* 1.3 73.4 - - + +
248C VAL* 1.3 67.1 + - + +
250C LEU* 3.1 24.1 + - + +
251C PHE* 3.1 36.4 + - + -
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Residues in contact with VAL 248 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91C VAL* 5.8 1.3 - - + -
94C PHE* 3.8 36.8 - - + -
98C PHE* 4.6 5.6 - - + -
204C HIS* 3.6 18.6 - - + -
244C PHE* 2.9 51.7 + - + +
245C VAL* 3.9 4.5 - - - +
247C VAL* 1.3 76.9 - - + +
249C TRP* 1.3 62.7 + - - +
251C PHE* 3.2 8.6 + - - +
252C LEU* 2.9 30.2 + - + +
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Residues in contact with TRP 249 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130C PRO* 3.8 11.2 - - + -
133C ASN* 3.7 21.3 - - + -
134C THR* 2.8 41.5 + - + +
137C LEU* 3.5 28.9 - - + -
173C PHE* 3.7 20.9 - + - -
177C GLN* 3.4 24.9 - - - -
201C THR* 4.8 1.6 - - + -
204C HIS* 3.6 18.0 + + - +
245C VAL 3.1 7.7 + - - +
246C ASP* 3.2 9.4 + - - +
248C VAL* 1.3 75.4 - - - +
250C LEU* 1.3 64.5 + - + +
252C LEU* 3.1 13.1 + - + +
253C TYR* 2.8 41.3 + + + +
257C TYR* 3.4 36.1 - + - -
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Residues in contact with LEU 250 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134C THR* 3.9 28.0 - - + -
138C LEU* 4.1 29.8 - - + -
246C ASP* 3.0 25.4 + - - +
247C VAL* 3.1 19.5 + - + +
249C TRP* 1.3 79.2 - - + +
251C PHE* 1.3 61.1 + - + +
253C TYR* 3.5 5.7 + - + +
254C VAL* 3.0 38.3 + - + +
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Residues in contact with PHE 251 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98C PHE* 3.6 25.8 - + + -
247C VAL* 3.1 41.7 + - + -
248C VAL* 3.6 7.2 - - - +
250C LEU* 1.3 76.3 - - + +
252C LEU* 1.3 61.6 + - - +
254C VAL* 4.0 3.7 - - + +
255C SER* 2.9 40.7 + - - -
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Residues in contact with LEU 252 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94C PHE* 5.6 0.9 - - + -
98C PHE* 3.6 22.2 - - + -
200C ALA* 3.8 32.5 - - + +
201C THR* 4.3 9.9 - - + +
204C HIS* 3.4 40.6 - - + -
248C VAL* 2.9 20.9 + - + +
249C TRP* 3.5 20.9 - - + +
251C PHE* 1.3 77.2 - - - +
253C TYR* 1.3 57.0 + - - +
256C ILE* 2.8 45.1 + - + +
257C TYR* 3.3 10.5 + - + -
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Residues in contact with TYR 253 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126C PRO* 2.7 43.2 + - + +
127C LEU* 4.6 6.4 - - - +
130C PRO* 3.6 30.5 - - + -
131C LEU* 3.8 20.8 - - + +
134C THR* 3.3 24.7 - - + +
249C TRP* 2.8 34.9 + + + +
250C LEU* 3.8 7.6 - - + +
252C LEU* 1.3 74.1 - - - +
254C VAL* 1.3 73.7 + - + +
257C TYR* 3.4 12.9 + - + +
258C TRP* 2.9 45.2 + + + +
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Residues in contact with VAL 254 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102C TYR* 5.5 1.6 - - - +
250C LEU* 3.0 23.7 + - + +
251C PHE* 4.0 4.7 - - + +
253C TYR* 1.3 82.4 - - + +
255C SER* 1.3 60.7 + - - +
258C TRP* 3.5 29.9 - - + +
259C TRP* 2.8 33.6 + - + +
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Residues in contact with SER 255 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98C PHE* 3.9 17.7 - - - -
101C PHE* 3.4 15.9 - - - -
102C TYR* 2.7 40.2 + - - -
251C PHE* 2.9 25.0 + - - +
252C LEU 4.2 0.2 - - - -
254C VAL* 1.3 79.6 - - - +
256C ILE* 1.3 60.9 + - - +
259C TRP* 3.5 3.5 - - - -
260C GLY 2.9 24.1 + - - -
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Residues in contact with ILE 256 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98C PHE* 5.3 3.1 - - + -
101C PHE* 3.8 44.3 - - + -
193C TYR* 4.8 10.3 + - + +
196C THR* 4.2 9.0 - - - +
197C PHE* 3.8 36.3 - - + +
200C ALA* 4.0 17.3 - - + -
201C THR* 5.1 2.5 - - + -
252C LEU* 2.8 42.4 + - + +
255C SER* 1.3 78.6 - - - +
257C TYR* 1.3 67.6 + - + +
260C GLY* 3.6 20.4 - - - +
261C SER* 4.8 0.5 - - - -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il