Contacts of the helix formed by residues 1562 - 1591 (chain C) in PDB entry 3B13
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP1562 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1493C SER* 5.3 3.6 + - - -
1495C LEU* 4.0 17.9 - - + +
1555C TYR* 2.9 24.6 + - + +
1559C HIS* 3.3 28.5 + - + +
1560C PRO 2.9 1.4 + - - -
1561C GLU* 1.3 89.1 - - - +
1563C GLN* 1.3 66.4 + - - +
1564C ASP 3.2 1.6 - - - -
1565C LYS* 3.0 43.0 + - - +
1566C LEU* 3.0 12.6 + - + +
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Residues in contact with GLN1563 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1556C VAL* 5.6 7.2 - - + -
1559C HIS 4.0 1.8 + - - +
1560C PRO* 2.9 16.7 + - + +
1561C GLU 3.2 1.4 - - - +
1562C ASP* 1.3 76.6 - - - +
1564C ASP* 1.3 83.3 + - - +
1566C LEU* 2.9 27.3 + - + +
1567C THR* 3.1 20.9 + - - +
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Residues in contact with ASP1564 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1561C GLU 4.4 5.4 + - - +
1562C ASP 3.2 1.1 - - - -
1563C GLN* 1.3 92.6 + - - +
1565C LYS* 1.3 68.0 + - + +
1567C THR* 3.0 17.4 + - - -
1568C HIS* 3.0 12.3 + - - +
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Residues in contact with LYS1565 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1493C SER* 4.4 3.8 + - - -
1495C LEU* 3.9 16.6 - - + -
1496C GLU* 2.8 45.3 + - + +
1499C ILE* 3.6 12.3 - - + +
1561C GLU 5.7 1.3 - - - +
1562C ASP* 3.0 36.0 + - - +
1564C ASP* 1.3 77.8 - - + +
1566C LEU* 1.3 52.5 + - - +
1568C HIS* 2.9 14.7 + - + +
1569C LEU 2.7 32.7 + - - -
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Residues in contact with LEU1566 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1495C LEU* 3.7 22.2 - - + -
1550C PHE* 3.6 20.9 - - + +
1551C PHE* 3.4 28.9 - - + -
1555C TYR* 4.3 11.7 - - + -
1556C VAL* 3.9 34.8 - - + -
1559C HIS 5.0 1.3 - - - +
1562C ASP 3.0 12.7 + - - +
1563C GLN* 2.9 24.1 + - + +
1565C LYS* 1.3 76.0 - - - +
1567C THR* 1.3 63.5 + - - +
1569C LEU* 3.0 7.1 + - - +
1570C LYS* 2.9 31.9 + - - +
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Residues in contact with THR1567 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1563C GLN* 3.1 23.0 + - - +
1564C ASP* 3.0 8.8 + - - -
1566C LEU* 1.3 72.0 - - - +
1568C HIS* 1.3 56.9 + - - +
1570C LYS* 3.0 18.0 + - + +
1571C ASP* 2.6 38.3 + - + +
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Residues in contact with HIS1568 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1499C ILE* 3.6 27.8 - - + +
1503C SER* 5.8 1.3 + - - -
1564C ASP 3.0 10.9 + - - +
1565C LYS* 3.0 19.5 - - + +
1567C THR* 1.3 74.9 - - - +
1569C LEU* 1.3 55.4 + - - -
1571C ASP* 3.0 14.1 + - - +
1572C LEU* 2.8 53.0 + - + +
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Residues in contact with LEU1569 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1495C LEU* 3.7 22.9 - - + -
1498C ALA* 4.3 9.0 - - + +
1499C ILE* 3.7 17.0 - - + +
1502C MET* 3.7 30.1 - - + -
1546C TYR* 4.0 16.2 - - + -
1550C PHE* 3.9 15.7 - - + -
1551C PHE* 3.8 20.2 - - + -
1565C LYS 2.7 11.5 + - - +
1566C LEU* 3.0 10.3 + - - +
1568C HIS* 1.3 70.9 - - - +
1570C LYS* 1.3 67.0 + - - +
1572C LEU* 3.0 13.1 + - + +
1573C ILE* 2.8 29.6 + - + +
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Residues in contact with LYS1570 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1551C PHE* 3.5 34.8 - - + +
1566C LEU* 2.9 26.4 + - - +
1567C THR* 3.3 17.5 - - + +
1569C LEU* 1.3 72.9 - - - +
1571C ASP* 1.3 64.2 + - - +
1573C ILE* 3.0 11.4 + - - +
1574C ALA* 2.8 23.8 + - - +
1617C TYR* 3.6 37.6 - - + +
1620C ARG* 5.7 0.7 - - - -
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Residues in contact with ASP1571 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1567C THR* 2.6 19.4 + - + +
1568C HIS* 3.1 19.4 + - - +
1570C LYS* 1.3 72.2 - - - +
1572C LEU* 1.3 65.0 + - - +
1574C ALA* 3.0 2.9 + - - +
1575C TRP* 2.8 43.0 + - - -
1620C ARG* 2.2 41.3 + - - +
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Residues in contact with LEU1572 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1499C ILE* 3.6 46.2 - - + +
1502C MET* 3.9 20.2 - - + -
1503C SER* 4.3 20.2 - - - +
1506C ASN* 3.4 21.7 + - + +
1568C HIS* 2.8 38.5 + - + +
1569C LEU* 3.4 11.7 - - - +
1571C ASP* 1.3 71.0 - - + +
1573C ILE* 1.3 65.9 + - - +
1575C TRP* 3.0 7.4 + - + -
1576C GLN* 2.9 19.9 + - - +
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Residues in contact with ILE1573 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1502C MET* 4.4 7.2 - - - -
1543C PHE* 3.5 56.4 - - + +
1546C TYR* 5.5 0.9 - - + -
1547C GLU* 4.6 2.9 - - + -
1551C PHE* 4.1 25.8 - - + -
1569C LEU* 2.8 34.4 + - + +
1570C LYS* 3.3 8.7 - - - +
1572C LEU* 1.3 74.3 - - - +
1574C ALA* 1.3 66.7 + - - +
1576C GLN* 3.0 21.6 + - - +
1577C ILE* 3.7 3.3 + - - +
1613C VAL* 3.9 17.0 - - + +
1617C TYR* 3.9 16.8 - - + +
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Residues in contact with ALA1574 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1570C LYS 2.8 15.2 + - - +
1571C ASP 3.4 3.8 - - - +
1573C ILE* 1.3 72.4 - - - +
1575C TRP* 1.3 62.6 + - - +
1577C ILE* 3.0 17.7 + - - +
1578C PRO* 3.2 9.9 - - - +
1613C VAL* 4.0 12.1 - - - -
1617C TYR* 4.2 12.3 - - + +
1618C GLY 4.5 6.7 - - - +
1620C ARG* 3.3 46.7 + - + +
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Residues in contact with TRP1575 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1506C ASN* 4.1 9.0 - - - +
1571C ASP* 2.8 47.0 + - - +
1572C LEU* 3.0 9.8 + - + +
1574C ALA* 1.3 75.2 - - - +
1576C GLN* 1.3 65.8 + - - +
1578C PRO* 3.0 24.3 - - + +
1579C PHE* 3.3 39.9 - + + -
1620C ARG* 3.6 29.3 - - + +
1621C GLU 3.3 33.9 - - - -
1622C MET* 4.6 2.7 - - - -
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Residues in contact with GLN1576 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1502C MET* 3.9 24.9 - - - +
1505C ALA* 4.0 12.3 - - - +
1506C ASN* 2.9 31.1 + - - +
1509C ILE* 4.3 5.1 - - + +
1534C ILE* 3.5 22.5 - - - +
1543C PHE* 3.7 25.5 - - + -
1572C LEU 2.9 9.4 + - - +
1573C ILE* 3.0 13.8 + - - +
1575C TRP* 1.3 77.1 - - - +
1577C ILE* 1.3 63.4 + - + +
1579C PHE* 3.4 4.8 + - - +
1580C LEU* 3.1 39.0 + - + +
1609C LEU* 5.6 0.3 - - - +
37D PHE* 3.8 7.5 - - - -
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Residues in contact with ILE1577 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1543C PHE* 5.6 2.2 - - + -
1573C ILE 4.1 2.9 - - - +
1574C ALA 3.0 5.6 + - - +
1575C TRP 3.0 1.2 - - - -
1576C GLN* 1.3 80.5 - - + +
1578C PRO* 1.3 70.8 - - + +
1580C LEU* 4.9 2.2 - - + -
1581C GLY 3.0 18.0 + - - -
1606C PHE* 3.3 17.7 - - + -
1609C LEU* 3.8 23.8 - - + -
1610C LYS* 3.5 38.6 - - + +
1613C VAL* 3.4 49.8 - - + -
1614C GLU* 4.8 10.1 - - + +
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Residues in contact with PRO1578 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1574C ALA 3.2 11.7 - - - +
1575C TRP* 3.0 31.0 - - + +
1577C ILE* 1.3 90.0 - - + +
1579C PHE* 1.3 60.9 + - + +
1581C GLY* 3.4 1.8 + - - -
1582C ALA* 3.1 23.0 + - - +
1606C PHE* 5.6 0.2 - - + -
1620C ARG* 3.8 30.5 - - + +
1621C GLU* 3.8 21.8 - - + -
1622C MET* 4.0 15.3 - - + +
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Residues in contact with PHE1579 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1506C ASN* 3.7 46.7 - - + -
1509C ILE* 3.7 20.8 - - + +
1510C LEU* 3.5 31.0 - - + -
1513C ILE* 3.6 8.8 - - - +
1575C TRP* 3.3 44.0 - + + -
1576C GLN* 3.5 5.4 - - - +
1577C ILE 3.2 0.8 - - - -
1578C PRO* 1.3 70.8 - - - +
1580C LEU* 1.3 68.6 + - - +
1581C GLY 3.0 1.1 - - - -
1582C ALA 3.0 12.1 + - - -
1583C GLY 3.0 9.2 + - - -
1622C MET* 3.3 29.6 - - - -
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Residues in contact with LEU1580 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1509C ILE* 3.5 27.1 - - + +
1531C LEU* 4.1 15.9 - - + +
1534C ILE* 3.7 25.4 - - + -
1535C VAL* 3.6 30.5 - - + -
1576C GLN* 3.1 28.5 + - + +
1577C ILE* 3.9 3.6 - - + +
1579C PHE* 1.3 78.1 - - - +
1581C GLY* 1.3 57.3 + - - +
1583C GLY* 3.2 2.5 + - - +
1584C ILE* 2.8 34.9 + - - +
1606C PHE* 3.9 13.2 - - + -
1609C LEU* 4.2 21.8 - - + -
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Residues in contact with GLY1581 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1577C ILE 3.0 12.0 + - - -
1578C PRO* 3.7 4.9 - - - -
1579C PHE 3.0 0.2 + - - -
1580C LEU* 1.3 76.3 - - - +
1582C ALA* 1.3 56.2 + - - +
1584C ILE* 3.2 5.9 + - - +
1585C LYS* 3.0 30.8 + - - +
1606C PHE* 3.5 28.4 - - - -
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Residues in contact with ALA1582 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1513C ILE* 4.1 11.7 - - + -
1517C GLN* 5.8 2.7 - - - +
1578C PRO 3.1 7.5 + - - +
1579C PHE 3.0 6.5 + - - +
1581C GLY* 1.3 72.6 - - - +
1583C GLY* 1.3 65.3 + - - +
1585C LYS* 3.5 21.6 + - - +
1586C ILE* 3.3 26.5 + - - +
1622C MET* 3.6 31.9 - - + -
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Residues in contact with GLY1583 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1513C ILE* 4.0 15.9 - - - +
1527C LEU* 4.1 5.8 - - - +
1531C LEU* 3.6 23.6 - - - +
1579C PHE 3.0 12.5 + - - -
1580C LEU 3.2 3.3 + - - -
1582C ALA* 1.3 75.3 - - - +
1584C ILE* 1.3 58.7 + - - +
1586C ILE* 3.3 9.0 + - - +
1587C HIS* 2.8 26.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE1584 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1531C LEU* 4.5 10.1 - - + -
1535C VAL* 4.4 12.6 - - + -
1580C LEU* 2.8 20.8 + - + +
1581C GLY* 3.2 6.7 + - - +
1583C GLY* 1.3 73.8 - - - +
1585C LYS* 1.3 55.2 + - - +
1587C HIS* 3.0 7.3 + - + +
1588C GLU* 2.7 33.8 + - - +
1599C HIS* 3.7 20.4 - - + -
1602C MET* 4.3 20.0 - - + +
1603C GLU* 3.7 25.1 - - - +
1606C PHE* 3.5 41.3 - - + -
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Residues in contact with LYS1585 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1581C GLY 3.0 11.3 + - - +
1582C ALA* 3.8 26.0 + - - +
1583C GLY 3.4 0.2 - - - -
1584C ILE* 1.3 73.3 - - - +
1586C ILE* 1.3 68.4 + - + +
1588C GLU* 2.9 23.9 + - + +
1589C LYS* 3.2 27.9 + - - +
----------------------------------------------------------
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Residues in contact with ILE1586 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1513C ILE* 3.9 26.0 - - + +
1516C TYR* 4.1 10.5 - - + -
1517C GLN* 3.8 37.5 - - + +
1527C LEU* 3.8 19.1 - - + -
1582C ALA 3.3 14.0 + - - +
1583C GLY* 3.3 8.3 - - - +
1584C ILE 3.3 0.2 - - - -
1585C LYS* 1.3 76.7 - - + +
1587C HIS* 1.3 66.0 + - - +
1589C LYS* 3.1 29.0 + - + +
1590C ARG* 3.2 33.6 + - - +
----------------------------------------------------------
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Residues in contact with HIS1587 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1524C ILE* 4.4 5.3 - - + +
1527C LEU* 4.0 17.9 - - + -
1528C SER* 2.7 46.6 + - - -
1531C LEU* 4.3 4.5 - - + -
1583C GLY 2.8 17.4 + - - +
1584C ILE* 3.0 13.7 + - + +
1586C ILE* 1.3 72.5 - - - +
1588C GLU* 1.3 58.6 + - - +
1590C ARG* 3.1 3.1 + - - -
1591C VAL* 2.8 56.7 + - + +
1598C PHE* 4.0 12.5 - + - -
1599C HIS* 2.8 32.5 + - + +
1602C MET* 4.1 9.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU1588 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1584C ILE 2.7 14.8 + - - +
1585C LYS* 2.9 15.5 + - + +
1587C HIS* 1.3 74.4 - - - +
1589C LYS* 1.3 65.8 + - - +
1591C VAL* 3.7 3.0 - - - +
1596C ARG* 3.0 45.0 + - - +
1599C HIS* 3.2 30.2 - - + +
1603C GLU* 4.4 7.0 - - - +
----------------------------------------------------------
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Residues in contact with LYS1589 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1585C LYS* 3.2 32.1 + - - +
1586C ILE* 3.1 19.8 + - + +
1588C GLU* 1.3 83.7 - - - +
1590C ARG* 1.3 68.3 + - + +
1591C VAL 4.8 1.2 - - - +
----------------------------------------------------------
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Residues in contact with ARG1590 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1516C TYR* 2.3 57.5 + - - +
1517C GLN* 3.9 3.6 - - - +
1519C ASP 3.1 19.8 + - - -
1520C GLU* 3.2 42.6 + - - +
1522C LEU 4.0 7.4 + - - -
1524C ILE* 3.5 28.9 - - + +
1586C ILE* 3.2 23.1 + - - +
1587C HIS 3.1 2.8 + - - +
1589C LYS* 1.3 84.6 - - + +
1591C VAL* 1.3 69.7 + - - +
1592C SER* 3.3 2.8 + - - -
----------------------------------------------------------
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Residues in contact with VAL1591 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1524C ILE* 4.6 12.1 - - + +
1587C HIS* 2.8 42.7 + - + +
1588C GLU 3.7 0.8 - - - +
1589C LYS 4.8 1.6 - - - +
1590C ARG* 1.3 74.3 - - - +
1592C SER* 1.3 70.9 + - - +
1593C ASP* 5.4 0.5 - - - +
1595C LEU* 3.5 37.0 - - + +
1596C ARG* 3.2 39.1 + - - +
1599C HIS* 4.1 13.0 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
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