Contacts of the helix formed by residues 110 - 157 (chain B) in PDB entry 3C98
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 110 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A GLU* 3.8 16.4 - - - -
108B ARG* 5.2 2.3 - - - +
109B SER* 1.3 80.7 + - - +
111B ALA* 1.3 66.4 + - - +
112B ASP* 3.2 18.3 + - - +
113B LEU* 3.3 8.9 + - - +
114B ARG* 3.2 29.0 + - - +
243B TYR* 5.2 6.7 - - - -
246B ARG* 4.6 13.3 + - - -
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Residues in contact with ALA 111 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A ILE* 4.2 19.3 - - + -
59A GLU* 5.6 0.7 - - - +
66A GLU* 2.9 25.3 + - + +
68A LEU* 3.9 27.8 - - + -
29B PHE* 5.2 1.3 - - + -
110B SER* 1.3 72.2 - - - +
112B ASP* 1.3 58.0 + - - +
114B ARG* 3.2 12.7 + - - +
115B ILE* 2.9 40.9 + - + +
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Residues in contact with ASP 112 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66A GLU* 5.4 0.6 + - - -
29B PHE* 5.4 4.8 - - + -
30B MET* 3.7 35.0 - - - +
103B GLU* 5.6 4.0 - - - +
110B SER* 3.1 12.2 - - - +
111B ALA* 1.3 80.7 - - - +
113B LEU* 1.3 64.4 + - - +
115B ILE* 3.6 0.4 + - - +
116B ARG* 2.7 58.6 + - - +
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Residues in contact with LEU 113 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B ILE* 4.1 29.8 - - + +
103B GLU* 3.9 25.8 - - + +
104B GLU* 4.0 21.3 - - + +
108B ARG* 3.1 33.0 - - + +
109B SER* 4.6 2.9 - - - -
110B SER* 3.3 16.9 + - - +
112B ASP* 1.3 81.2 + - - +
114B ARG* 1.3 62.2 + - + +
116B ARG* 3.6 6.1 + - + +
117B LYS* 3.1 26.2 + - + +
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Residues in contact with ARG 114 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A ILE* 3.7 24.5 - - + +
58A VAL 3.7 14.6 + - - -
59A GLU* 2.8 39.0 + - - -
66A GLU* 6.0 1.8 + - - +
110B SER 3.2 17.2 + - - +
111B ALA* 3.2 13.1 + - - +
113B LEU* 1.3 77.7 - - + +
115B ILE* 1.3 63.5 + - - +
117B LYS* 3.2 7.6 + - + +
118B THR* 2.9 35.0 + - + +
236B ASN* 5.0 7.9 + - - +
240B ALA* 3.9 24.5 - - - +
241B VAL 5.8 1.8 + - - -
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Residues in contact with ILE 115 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A THR* 3.6 48.5 - - + +
57A ILE* 4.3 12.3 - - + -
68A LEU* 5.6 1.6 - - + -
71A LEU* 5.5 1.3 - - + -
29B PHE* 4.0 15.5 - - + -
30B MET* 3.8 26.7 - - + -
33B PHE* 4.3 2.9 - - + -
34B PHE* 3.9 17.7 - - + -
111B ALA* 2.9 28.4 + - + +
112B ASP 4.0 3.4 - - - +
114B ARG* 1.3 76.4 - - - +
116B ARG* 1.3 63.3 + - - +
118B THR* 3.4 5.8 + - - -
119B GLN* 2.9 31.7 + - + +
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Residues in contact with ARG 116 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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30B MET* 3.9 13.9 - - + +
33B PHE* 3.4 56.8 - - + +
96B ILE* 4.3 1.2 - - - +
99B SER* 4.0 23.5 + - - -
100B ILE* 3.6 19.1 - - + +
103B GLU* 5.3 11.1 - - - +
112B ASP* 2.7 44.3 + - - +
113B LEU* 3.8 9.6 - - - +
114B ARG 3.3 0.6 - - - -
115B ILE* 1.3 76.4 - - - +
117B LYS* 1.3 64.0 + - - +
120B HIS* 3.1 25.3 + - - +
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Residues in contact with LYS 117 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100B ILE* 3.5 25.2 - - + +
104B GLU* 3.0 30.5 + - - +
113B LEU* 3.1 20.8 + - + +
114B ARG* 3.2 7.2 + - + +
116B ARG* 1.3 80.5 - - - +
118B THR* 1.3 60.7 + - + +
120B HIS* 3.6 5.4 - - - +
121B SER* 3.3 22.9 + - - -
230B ILE* 4.3 20.2 - - + +
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Residues in contact with THR 118 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47A MET* 4.1 13.8 - - + +
51A MET* 3.5 24.4 - - - +
56A THR 4.2 3.6 + - - -
57A ILE* 5.8 0.3 - - - +
114B ARG* 2.9 22.8 + - + +
115B ILE* 3.4 7.8 + - - -
117B LYS* 1.3 77.9 - - + +
119B GLN* 1.3 65.1 + - - +
120B HIS 3.1 1.6 - - - -
121B SER* 3.1 8.3 + - - +
122B THR* 2.9 26.9 + - - +
230B ILE* 4.8 11.2 - - + +
236B ASN* 4.1 22.9 - - - +
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Residues in contact with GLN 119 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A TRP* 3.4 35.9 - - - -
51A MET* 3.4 19.8 + - + +
56A THR* 3.3 19.0 + - - -
33B PHE* 4.0 20.4 - - + -
34B PHE* 4.1 3.0 - - + -
37B VAL* 4.0 22.6 - - + +
115B ILE* 2.9 32.5 + - + +
116B ARG 4.1 0.2 - - - +
118B THR* 1.3 75.7 - - - +
120B HIS* 1.3 61.0 + - - +
122B THR* 2.9 24.9 + - - -
123B LEU* 3.0 24.0 + - + +
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Residues in contact with HIS 120 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
33B PHE* 5.3 0.4 - - - -
93B LEU* 3.2 42.2 + - + +
96B ILE* 4.2 11.7 - - + +
97B GLU* 3.7 30.5 + - + +
100B ILE* 4.3 13.0 - - + -
116B ARG 3.1 19.7 + - - +
117B LYS 3.6 7.2 - - - +
119B GLN* 1.3 77.8 - - - +
121B SER* 1.3 57.8 + - - +
123B LEU* 3.6 7.2 + - - +
124B SER* 2.7 43.2 + - - -
222B LEU* 5.2 6.7 - - + +
226B GLN* 3.6 27.9 + - - -
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Residues in contact with SER 121 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B LYS 3.3 10.5 + - - -
118B THR* 3.1 9.5 + - - -
120B HIS* 1.3 81.6 - - - +
122B THR* 1.3 64.6 + - - +
124B SER* 3.3 4.0 + - - -
125B ARG* 3.1 45.7 + - - +
226B GLN* 3.5 21.9 + - - +
230B ILE* 3.6 27.7 + - - +
231B ASP* 5.2 1.4 + - - +
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Residues in contact with THR 122 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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47A MET* 4.1 4.3 - - + -
48A THR* 3.7 36.6 - - - +
51A MET* 3.6 42.9 + - + +
52A THR* 5.3 1.6 - - - -
118B THR 2.9 10.0 + - - +
119B GLN* 2.9 29.1 + - - -
121B SER* 1.3 76.2 - - - +
123B LEU* 1.3 65.2 + - - +
125B ARG* 3.1 4.4 + - - +
126B LYS* 3.0 28.9 + - - +
231B ASP* 4.9 1.3 - - - +
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Residues in contact with LEU 123 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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37B VAL* 4.3 32.3 - - + -
40B ILE* 3.9 40.4 - - + -
41B ARG* 4.6 23.1 - - + +
44B ILE* 3.6 8.1 - - + +
93B LEU* 3.8 17.7 - - + -
96B ILE* 5.1 3.8 - - + -
119B GLN* 3.0 25.5 + - - +
120B HIS* 4.0 1.8 - - - +
122B THR* 1.3 79.4 + - - +
124B SER* 1.3 57.9 + - - +
126B LYS* 3.3 7.1 + - + -
127B PHE* 2.9 31.6 + - - +
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Residues in contact with SER 124 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93B LEU* 3.9 20.2 - - - +
120B HIS* 2.7 40.5 + - - -
121B SER* 3.6 7.4 - - - -
122B THR 3.2 0.2 - - - -
123B LEU* 1.3 76.9 - - - +
125B ARG* 1.3 58.8 + - - +
127B PHE* 3.5 3.0 + - - +
128B VAL* 3.0 34.8 + - - +
222B LEU* 5.5 6.3 - - - +
223B VAL* 6.0 5.6 - - - -
226B GLN* 4.3 10.7 + - - -
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Residues in contact with ARG 125 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A THR* 3.6 26.9 - - + +
339A LYS* 6.1 2.8 - - - +
121B SER* 3.1 25.9 + - - +
122B THR* 3.1 8.1 + - - +
124B SER* 1.3 76.5 - - - +
126B LYS* 1.3 59.5 + - - +
128B VAL* 3.9 6.4 - - - +
129B GLU* 2.9 31.7 + - - +
223B VAL* 5.7 15.6 - - + +
226B GLN* 4.3 7.1 + - - +
227B GLY 2.9 27.9 + - - -
228B GLU* 3.8 19.0 - - - +
230B ILE* 3.7 17.4 - - - +
231B ASP* 3.7 23.8 + - - +
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Residues in contact with LYS 126 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
48A THR* 3.9 20.4 - - + +
52A THR* 3.6 31.8 + - + +
41B ARG* 5.3 12.1 - - - +
44B ILE* 4.2 17.0 - - + -
122B THR 3.0 23.7 + - - +
123B LEU* 3.7 9.6 - - + +
125B ARG* 1.3 76.7 - - - +
127B PHE* 1.3 57.1 + - - +
129B GLU* 3.2 32.7 + - - +
130B VAL* 3.0 37.3 + - + +
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Residues in contact with PHE 127 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B ILE* 3.9 19.7 - - + +
47B ILE* 4.2 7.6 - - + -
86B ALA* 3.7 28.0 - - + -
89B VAL* 3.7 31.2 - - + -
90B ARG* 4.4 11.2 - - + -
93B LEU* 4.2 9.6 - - + -
123B LEU 2.9 17.5 + - - +
124B SER* 3.7 7.0 - - - +
126B LYS* 1.3 74.4 - - - +
128B VAL* 1.3 64.6 + - - +
130B VAL* 3.4 3.6 + - + +
131B MET* 3.1 56.0 + - + +
215B MET* 4.0 22.7 - - - -
219B MET* 4.3 20.2 - - + -
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Residues in contact with VAL 128 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
339A LYS* 5.6 10.5 - - + -
124B SER* 3.0 22.3 + - - +
125B ARG* 3.9 6.1 - - - +
127B PHE* 1.3 75.5 - - + +
129B GLU* 1.3 58.4 + - - +
131B MET* 3.9 1.2 - - - +
132B SER* 3.0 30.9 + - - -
219B MET* 3.8 52.2 - - + +
223B VAL* 4.4 16.2 - - + -
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Residues in contact with GLU 129 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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48A THR* 5.4 2.3 - - - +
125B ARG 2.9 18.5 + - - +
126B LYS* 3.3 37.3 + - - +
128B VAL* 1.3 80.2 - - - +
130B VAL* 1.3 63.9 + - + +
132B SER* 3.4 7.3 + - - -
133B GLU* 3.2 20.4 + - - +
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Residues in contact with VAL 130 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
44B ILE* 3.9 22.0 - - + +
47B ILE* 3.7 30.7 - - + -
48B ALA* 3.8 28.5 - - + +
51B VAL* 4.7 4.7 - - + +
126B LYS* 3.0 18.9 + - + +
127B PHE* 3.4 5.4 + - + +
129B GLU* 1.3 76.0 - - + +
131B MET* 1.3 66.2 + - + +
132B SER 3.1 1.8 - - - -
133B GLU* 3.1 10.4 + - + +
134B TYR* 3.1 20.1 + - - +
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Residues in contact with MET 131 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
47B ILE* 4.1 25.8 - - - -
82B ILE* 4.3 11.7 - - + -
86B ALA* 4.0 19.5 - - + -
127B PHE* 3.1 43.6 + - + +
128B VAL 4.0 2.9 - - - +
130B VAL* 1.3 75.9 - - - +
132B SER* 1.3 57.1 + - - +
134B TYR* 3.4 12.1 + - + +
135B ASN* 3.1 26.3 + - - +
212B LEU* 4.2 26.9 - - + -
215B MET* 4.8 7.2 - - + -
216B PHE* 3.8 23.8 - - + -
219B MET* 4.1 9.6 - - + -
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Residues in contact with SER 132 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A GLN 4.6 13.0 + - - -
340A GLU* 4.8 8.8 + - - -
128B VAL* 3.0 22.0 + - - -
129B GLU* 3.5 9.4 - - - -
130B VAL 3.1 0.2 - - - -
131B MET* 1.3 74.7 - - - +
133B GLU* 1.3 59.4 + - - +
135B ASN* 3.1 8.3 + - - +
136B ALA* 3.0 29.0 + - - +
216B PHE* 4.7 3.3 - - - -
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Residues in contact with GLU 133 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51B VAL* 4.1 16.6 - - + -
52B GLU* 4.7 4.9 - - - +
55B LYS* 3.0 23.8 + - - +
129B GLU 3.2 9.6 + - - +
130B VAL* 3.1 14.2 + - + +
132B SER* 1.3 78.0 - - - +
134B TYR* 1.3 57.1 + - - +
136B ALA* 3.5 9.4 + - - +
137B THR* 2.9 31.2 + - - -
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Residues in contact with TYR 134 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51B VAL* 3.9 20.8 - - + +
54B VAL* 4.9 10.3 - - + -
79B MET* 3.9 13.9 + - + +
82B ILE* 3.5 40.8 - - + -
130B VAL 3.1 11.4 + - - +
131B MET* 3.4 18.8 - - + +
132B SER 3.1 0.2 - - - -
133B GLU* 1.3 75.2 - - - +
135B ASN* 1.3 65.8 + - - +
137B THR* 3.2 8.2 + - - -
138B GLN* 2.9 61.0 + - + +
208B SER* 3.1 18.5 + - - -
209B ILE* 5.5 4.7 - - + -
212B LEU* 3.9 29.4 - - + -
216B PHE* 5.3 2.9 - + - -
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Residues in contact with ASN 135 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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336A GLN* 3.9 24.6 - - + +
337A TYR* 3.2 34.2 + - - -
131B MET 3.1 13.6 + - - +
132B SER* 3.1 10.6 + - - +
134B TYR* 1.3 80.7 - - - +
136B ALA* 1.3 59.4 + - - +
138B GLN* 3.5 4.4 + - - +
139B SER* 3.0 25.3 + - - -
209B ILE* 3.9 31.2 - - - +
216B PHE* 4.3 14.8 - - + -
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Residues in contact with ALA 136 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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314A LYS* 5.6 5.6 - - - +
337A TYR* 6.5 0.4 - - - -
132B SER 3.0 14.8 + - - +
133B GLU* 3.8 14.1 - - - +
134B TYR 3.2 0.2 - - - -
135B ASN* 1.3 77.3 + - - +
137B THR* 1.3 63.7 + - - +
139B SER* 3.9 6.9 - - - -
140B ASP* 3.1 25.3 + - - +
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Residues in contact with THR 137 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
51B VAL* 3.8 9.8 - - + +
54B VAL* 4.4 11.2 - - + -
55B LYS* 3.3 39.3 + - + +
58B HIS* 3.8 26.7 - - + +
133B GLU* 2.9 17.4 + - - -
134B TYR* 3.4 13.0 - - + -
136B ALA* 1.3 79.8 - - - +
138B GLN* 1.3 59.6 + - - +
140B ASP* 3.8 4.7 - - - +
141B TYR* 3.0 26.3 + - - +
144B ARG* 4.3 3.1 + - - +
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Residues in contact with GLN 138 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
54B VAL* 5.1 2.8 - - - +
58B HIS* 3.3 26.5 + - - -
79B MET* 3.9 19.6 - - - +
134B TYR* 2.9 59.6 + - + +
135B ASN* 3.9 2.0 - - - +
136B ALA 3.3 0.2 - - - -
137B THR* 1.3 75.7 - - - +
139B SER* 1.3 65.2 + - - +
141B TYR* 3.2 1.4 + - - -
142B ARG* 3.0 20.6 + - - +
205B LEU* 3.2 29.5 + - + +
208B SER* 4.6 5.9 + - - -
209B ILE* 3.7 28.0 - - + -
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Residues in contact with SER 139 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313A SER 5.2 1.4 + - - -
314A LYS* 3.9 18.5 + - - +
315A ARG* 4.0 19.9 + - - +
337A TYR* 4.1 13.8 + - - -
135B ASN* 3.0 19.9 + - - -
136B ALA* 3.9 7.9 - - - -
137B THR 3.4 0.2 - - - -
138B GLN* 1.3 76.5 - - - +
140B ASP* 1.3 61.0 + - - +
142B ARG* 3.6 6.9 + - - +
143B GLU* 3.5 18.2 + - - +
205B LEU* 6.0 0.2 - - - -
209B ILE* 4.9 3.7 - - - +
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Residues in contact with ASP 140 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B ALA 3.1 18.8 + - - +
137B THR* 3.8 5.2 - - - +
139B SER* 1.3 74.3 - - - +
141B TYR* 1.3 65.4 + - - +
143B GLU* 3.3 10.5 + - - +
144B ARG* 3.2 48.5 + - - +
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Residues in contact with TYR 141 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B HIS* 3.2 57.9 - + + +
61B ILE* 3.9 15.4 - - - +
62B LEU* 3.8 27.6 - - + +
75B LEU* 5.1 0.4 - - + -
137B THR 3.0 17.9 + - - +
138B GLN* 3.2 5.4 + - - +
140B ASP* 1.3 77.6 - - - +
142B ARG* 1.3 60.2 + - - +
144B ARG* 3.2 9.7 + - - +
145B CYS* 3.0 44.9 + - - -
198B ARG* 5.1 0.5 + - - -
201B GLU* 3.2 44.1 + - + +
205B LEU* 3.3 24.5 - - + -
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Residues in contact with ARG 142 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A ARG* 3.5 38.2 - - - +
138B GLN 3.0 12.1 + - - +
139B SER* 3.7 10.5 - - - +
140B ASP 3.2 0.2 - - - -
141B TYR* 1.3 77.5 - - - +
143B GLU* 1.3 57.4 + - - +
145B CYS* 3.3 5.5 + - - +
146B LYS* 2.8 51.8 + - - +
166B GLU* 3.0 41.9 + - - -
169B LEU* 3.8 20.2 - - - +
170B GLU* 5.4 1.4 - - - +
202B ILE* 4.0 20.9 - - + +
205B LEU* 3.7 19.4 - - + +
206B GLU* 3.3 27.0 + - - -
----------------------------------------------------------
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Residues in contact with GLU 143 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A ARG* 4.3 16.2 + - - +
139B SER 3.5 8.9 + - - +
140B ASP* 3.3 14.8 + - - +
142B ARG* 1.3 78.7 - - - +
144B ARG* 1.3 57.8 + - + +
146B LYS* 3.8 26.3 + - - +
147B GLY* 3.1 22.0 + - - -
162B SER* 5.5 1.6 + - - -
----------------------------------------------------------
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Residues in contact with ARG 144 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55B LYS* 5.4 7.9 + - - +
58B HIS* 4.2 18.3 - - - +
59B SER* 4.1 17.0 + - - +
62B LEU* 3.8 32.2 - - + +
137B THR* 4.3 5.5 + - - +
140B ASP* 3.2 39.8 + - - +
141B TYR* 3.2 30.6 + - - +
143B GLU* 1.3 76.1 - - + +
145B CYS* 1.3 64.5 + - - +
147B GLY* 3.2 3.2 + - - -
148B ARG* 3.2 22.2 + - - +
----------------------------------------------------------
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Residues in contact with CYS 145 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 4.3 10.3 - - - -
141B TYR* 3.0 55.1 + - - -
142B ARG 3.7 2.5 - - - +
144B ARG* 1.3 72.1 - - - +
146B LYS* 1.3 59.1 + - - +
147B GLY 2.9 1.8 - - - -
148B ARG* 2.7 29.7 + - - +
149B ILE* 3.2 13.8 + - - +
198B ARG* 4.0 17.4 - - + +
201B GLU* 4.5 3.8 - - - -
202B ILE* 3.4 30.5 - - + -
----------------------------------------------------------
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Residues in contact with LYS 146 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A ARG* 5.3 1.6 - - - +
142B ARG* 2.8 37.6 + - - +
143B GLU* 3.8 26.8 + - - +
145B CYS* 1.3 76.3 - - - +
147B GLY* 1.3 60.9 + - - +
149B ILE* 3.7 9.0 + - - +
150B GLN* 3.2 21.8 + - - +
162B SER* 3.6 32.1 + - - +
165B LEU* 3.6 28.8 - - + +
166B GLU* 3.5 31.3 + - - +
169B LEU* 4.6 1.6 - - + -
202B ILE* 3.7 12.9 - - + +
----------------------------------------------------------
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Residues in contact with GLY 147 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B GLU* 3.1 15.1 + - - -
144B ARG* 3.2 6.0 + - - -
145B CYS 2.9 1.0 - - - -
146B LYS* 1.3 76.0 - - - +
148B ARG* 1.3 63.8 + - - +
150B GLN* 3.3 19.8 - - - +
151B ARG* 3.3 13.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 148 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 3.2 38.1 + - + +
63B ALA* 5.2 2.4 - - - +
64B SER 6.5 0.4 - - - -
65B PRO* 6.0 2.0 - - - +
144B ARG 3.2 15.1 + - - +
145B CYS 2.7 15.0 + - - +
147B GLY* 1.3 69.3 - - - +
149B ILE* 1.3 65.0 + - - +
150B GLN 3.2 0.3 + - - -
151B ARG* 3.2 6.2 + - - +
152B GLN* 3.1 37.8 + - - +
194B GLU* 3.3 26.5 + - - +
198B ARG* 3.8 28.2 - - + +
----------------------------------------------------------
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Residues in contact with ILE 149 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145B CYS 3.2 9.1 + - - +
146B LYS* 3.9 8.5 - - - +
148B ARG* 1.3 74.5 - - - +
150B GLN* 1.3 63.0 + - - +
152B GLN* 3.3 7.8 + - - +
153B LEU* 3.0 39.0 + - + +
165B LEU* 4.5 7.4 - - + -
169B LEU* 4.6 8.3 - - + -
177B PHE* 3.7 40.6 - - + -
195B ILE* 4.1 27.8 - - + +
198B ARG* 4.1 12.8 - - + -
199B HIS* 4.5 10.5 - - + +
202B ILE* 4.3 23.3 - - + -
----------------------------------------------------------
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Residues in contact with GLN 150 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146B LYS* 3.2 13.9 + - - +
147B GLY* 3.3 14.8 - - - +
148B ARG 3.1 0.4 - - - -
149B ILE* 1.3 81.0 - - - +
151B ARG* 1.3 63.4 + - + +
153B LEU* 3.5 8.6 + - - +
154B GLU* 3.6 23.1 + - - +
160B THR* 3.0 35.0 + - - +
161B THR* 4.1 0.8 - - - +
162B SER* 4.0 23.6 - - - +
165B LEU* 3.4 20.2 - - + +
----------------------------------------------------------
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Residues in contact with ARG 151 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147B GLY 3.3 8.8 + - - +
148B ARG* 3.2 9.1 + - - +
150B GLN* 1.3 79.7 - - + +
152B GLN* 1.3 74.1 + - - +
154B GLU* 2.8 37.6 + - - +
155B ILE* 3.0 52.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 152 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B ARG* 3.1 32.9 + - - +
149B ILE 3.3 1.8 + - - +
151B ARG* 1.3 84.6 - - - +
153B LEU* 1.3 61.7 + - - +
155B ILE* 3.3 26.0 - - - +
156B THR* 3.4 14.9 + - - +
191B ALA* 3.2 30.4 - - + +
194B GLU* 3.6 27.5 + - + +
195B ILE* 3.5 34.2 - - + +
----------------------------------------------------------
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Residues in contact with LEU 153 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149B ILE* 3.0 26.3 + - + +
150B GLN* 3.7 5.8 - - - +
151B ARG 3.2 0.2 - - - -
152B GLN* 1.3 77.4 - - - +
154B GLU* 1.3 60.7 + - + +
156B THR* 2.7 21.6 + - - -
158B ARG* 3.0 41.2 + - + +
160B THR* 3.5 33.9 - - + +
165B LEU* 4.3 15.0 - - + -
168B MET* 5.0 12.6 - - + -
177B PHE* 4.7 16.4 - - + +
181B ILE* 5.0 7.0 - - + -
195B ILE* 4.1 19.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 154 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150B GLN* 3.6 18.6 + - - +
151B ARG* 2.8 47.0 + - - +
153B LEU* 1.3 75.1 - - + +
155B ILE* 1.3 67.2 + - - +
157B GLY* 3.0 14.8 + - - +
158B ARG 3.6 13.2 - - - +
159B THR* 4.7 17.6 - - - +
160B THR 5.2 6.1 - - - +
----------------------------------------------------------
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Residues in contact with ILE 155 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151B ARG* 3.0 42.2 + - - +
152B GLN* 3.3 26.2 - - - +
153B LEU 3.2 0.2 - - - -
154B GLU* 1.3 78.4 - - - +
156B THR* 1.3 63.5 + - + +
157B GLY* 3.2 1.6 + - - -
187B ILE* 3.9 28.7 - - + +
191B ALA* 4.3 11.9 - - + -
----------------------------------------------------------
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Residues in contact with THR 156 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152B GLN 3.4 12.3 + - - +
153B LEU* 2.7 21.8 + - - -
155B ILE* 1.3 77.2 - - + +
157B GLY* 1.3 57.4 + - - +
158B ARG* 3.3 5.7 - - - +
181B ILE* 3.2 51.1 - - + +
182B ILE* 5.6 8.2 - - - +
188B SER* 4.5 24.4 + - - +
191B ALA* 4.8 7.9 - - + -
195B ILE* 5.3 2.5 - - + -
----------------------------------------------------------
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Residues in contact with GLY 157 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154B GLU* 3.0 15.6 + - - -
155B ILE 3.1 1.3 - - - -
156B THR* 1.3 79.4 - - - +
158B ARG* 1.3 60.8 + - - +
159B THR* 4.2 1.4 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il