Contacts of the helix formed by residues 74 - 127 (chain B) in PDB entry 3GBN
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 74 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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106A GLU* 4.7 5.7 - - - +
69B GLU 4.7 1.0 - - - +
70B PHE* 3.5 13.3 - - + +
71B ASN* 2.9 52.7 + - - +
73B LEU* 1.3 82.7 - - - +
75B ARG* 1.3 58.5 + - - +
76B ARG* 3.3 3.1 - - - +
77B ILE* 3.4 31.3 + - + +
78B GLU* 2.9 29.4 + - - +
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Residues in contact with ARG 75 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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71B ASN 4.4 3.2 + - - -
72B ASN* 4.9 25.0 + - - +
73B LEU 3.6 2.0 - - - -
74B GLU* 1.3 78.1 - - - +
76B ARG* 1.3 58.0 + - + +
78B GLU* 3.6 23.1 + - - -
79B ASN* 2.8 55.9 + - - +
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Residues in contact with ARG 76 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B LEU 5.1 8.3 + - - -
74B GLU* 3.3 1.6 - - - +
75B ARG* 1.3 78.5 - - + +
77B ILE* 1.3 63.8 + - + +
79B ASN* 3.4 6.4 + - - +
80B LEU* 2.9 26.7 + - - +
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Residues in contact with ILE 77 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70B PHE* 3.8 23.2 - - + -
74B GLU* 3.5 38.3 - - + +
76B ARG* 1.3 80.4 - - + +
78B GLU* 1.3 62.8 + - - +
80B LEU* 3.1 18.5 + - + +
81B ASN* 2.8 30.1 + - - +
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Residues in contact with GLU 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B PHE* 3.6 43.3 - - + +
71B ASN 5.2 2.1 - - - +
74B GLU 2.9 19.4 + - - +
75B ARG* 3.6 28.8 + - - +
77B ILE* 1.3 76.0 - - - +
79B ASN* 1.3 59.5 + - - +
81B ASN* 3.2 5.4 + - - +
82B LYS* 3.0 28.7 + - + +
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Residues in contact with ASN 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75B ARG* 2.8 44.8 + - - +
76B ARG* 3.8 6.1 - - - +
78B GLU* 1.3 76.8 - - - +
80B LEU* 1.3 59.0 + - - +
82B LYS* 3.2 14.8 + - - +
83B LYS* 2.8 30.3 + - - +
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Residues in contact with LEU 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76B ARG 2.9 17.2 + - - +
77B ILE* 3.1 18.4 + - + +
79B ASN* 1.3 73.3 - - - +
81B ASN* 1.3 68.6 + - - +
83B LYS* 3.1 30.2 + - - +
84B VAL* 2.9 40.5 + - + +
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Residues in contact with ASN 81 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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67B GLY* 5.9 0.8 - - - -
68B LYS* 4.1 30.1 + - - +
70B PHE* 3.9 29.5 - - + -
77B ILE 2.8 12.7 + - - +
78B GLU 3.5 8.3 + - - +
80B LEU* 1.3 75.9 - - - +
82B LYS* 1.3 64.9 + - - +
84B VAL* 3.2 11.0 + - - +
85B ASP* 3.0 42.9 + - - +
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Residues in contact with LYS 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78B GLU* 3.0 16.9 + - + +
79B ASN* 3.5 16.8 - - - +
80B LEU 3.2 0.2 - - - -
81B ASN* 1.3 78.0 - - - +
83B LYS* 1.3 57.4 + - - +
85B ASP* 3.8 5.5 - - + +
86B ASP* 2.7 64.1 + - - +
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Residues in contact with LYS 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79B ASN 2.8 16.2 + - - +
80B LEU* 3.1 30.4 + - + +
82B LYS* 1.3 77.8 - - - +
84B VAL* 1.3 59.2 + - + +
86B ASP* 4.0 4.3 - - - +
87B GLY* 3.0 26.3 + - - -
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Residues in contact with VAL 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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80B LEU* 2.9 32.5 + - + +
81B ASN* 3.5 11.7 - - - +
83B LYS* 1.3 77.2 - - + +
85B ASP* 1.3 71.8 + - - +
87B GLY* 5.2 0.2 - - - -
88B PHE* 3.1 52.1 + - + -
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Residues in contact with ASP 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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81B ASN* 3.0 40.7 + - - +
82B LYS* 3.9 5.1 - - - +
84B VAL* 1.3 83.4 - - - +
86B ASP* 1.3 65.2 + - - +
88B PHE* 3.6 4.6 + - - +
89B LEU* 3.2 25.3 + - - +
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Residues in contact with ASP 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310A ARG* 4.2 17.4 + - - +
82B LYS* 2.7 56.8 + - - +
83B LYS* 4.1 3.5 - - - +
85B ASP* 1.3 77.9 - - - +
87B GLY* 1.3 58.0 + - - +
89B LEU* 3.4 6.5 + - - +
90B ASP* 2.9 38.3 + - - +
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Residues in contact with GLY 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83B LYS 3.0 18.5 + - - -
84B VAL 4.0 0.4 - - - -
86B ASP* 1.3 75.6 - - - +
88B PHE* 1.3 60.0 + - - +
90B ASP* 3.5 10.6 + - - +
91B ILE* 3.1 37.5 + - - +
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Residues in contact with PHE 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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84B VAL* 3.1 44.1 + - + +
85B ASP* 4.2 5.4 - - - +
87B GLY* 1.3 75.4 - - - +
89B LEU* 1.3 59.5 + - - +
91B ILE* 3.3 14.1 + - + +
92B TRP* 2.9 48.3 + + + -
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Residues in contact with LEU 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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299A PRO* 5.5 3.6 - - + -
308A TYR* 3.5 57.2 - - + +
309A VAL* 3.7 4.5 - - + -
310A ARG* 3.6 32.8 - - + +
85B ASP 3.2 19.3 + - - +
86B ASP* 3.6 9.0 - - - +
88B PHE* 1.3 72.9 - - - +
90B ASP* 1.3 57.3 + - - +
92B TRP* 3.4 2.8 + - + -
93B THR* 2.8 48.9 + - - +
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Residues in contact with ASP 90 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310A ARG* 2.3 45.4 + - - +
86B ASP* 2.9 23.9 + - - +
87B GLY* 3.5 10.9 - - - +
89B LEU* 1.3 71.5 - - - +
91B ILE* 1.3 66.5 + - + +
93B THR* 3.9 2.7 - - - -
94B TYR* 3.0 25.3 + - - +
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Residues in contact with ILE 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87B GLY* 3.1 21.7 + - - +
88B PHE* 3.8 17.7 - - + +
89B LEU 3.2 0.4 - - - -
90B ASP* 1.3 84.3 - - + +
92B TRP* 1.3 65.0 + - + +
94B TYR* 3.5 7.0 + - + +
95B ASN* 2.9 46.9 + - - +
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Residues in contact with TRP 92 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A PHE* 5.3 1.3 - + + -
307A LYS* 3.6 42.2 - - + +
308A TYR 5.0 2.2 - - - +
309A VAL* 4.0 12.9 - - + +
58B LYS 5.1 8.1 - - - -
59B MET* 4.0 29.4 - - + -
60B ASN 6.2 0.4 - - - -
88B PHE* 2.9 41.3 + + + +
89B LEU* 4.2 4.3 - - - +
91B ILE* 1.3 77.7 - - + +
93B THR* 1.3 64.8 + - - +
95B ASN* 3.6 28.2 - - + +
96B ALA* 3.0 26.0 + - - +
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Residues in contact with THR 93 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309A VAL* 3.7 9.4 - - - +
310A ARG* 3.1 37.8 + - + +
311A SER* 3.6 11.4 - - - +
89B LEU* 2.8 29.0 + - - +
90B ASP* 3.9 4.5 - - - -
92B TRP* 1.3 74.5 - - - +
94B TYR* 1.3 63.2 + - - +
96B ALA* 3.9 0.9 - - - +
97B GLU* 3.0 55.2 + - - +
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Residues in contact with TYR 94 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90B ASP 3.0 18.7 + - - +
91B ILE* 3.6 7.0 - - + +
93B THR* 1.3 79.2 - - - +
95B ASN* 1.3 72.7 + - - +
97B GLU* 4.0 4.1 - - - +
98B LEU* 3.0 67.7 + - + +
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Residues in contact with ASN 95 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59B MET* 4.6 5.5 - - + +
91B ILE* 2.9 41.8 + - - +
92B TRP* 3.6 34.8 - - + +
94B TYR* 1.3 93.1 - - - +
96B ALA* 1.3 59.2 + - - +
98B LEU* 4.1 4.1 - - - +
99B LEU* 2.9 32.2 + - - +
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Residues in contact with ALA 96 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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294A PHE* 3.6 35.0 - - + -
309A VAL* 4.5 4.7 - - + -
311A SER* 5.2 0.2 - - - +
314A LEU* 4.0 14.4 - - + -
59B MET* 4.2 10.5 - - + +
92B TRP 3.0 17.3 + - - +
93B THR 3.9 2.5 - - - +
95B ASN* 1.3 75.6 - - - +
97B GLU* 1.3 64.5 + - + +
99B LEU* 3.5 1.5 + - - +
100B VAL* 3.2 28.9 + - - +
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Residues in contact with GLU 97 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311A SER* 2.7 35.8 + - - +
313A LYS 5.1 2.9 - - - +
314A LEU* 3.7 16.2 - - + -
331A EDO 6.0 1.9 - - - -
93B THR* 3.0 31.5 + - - +
94B TYR* 4.2 3.7 - - - +
96B ALA* 1.3 75.6 - - - +
98B LEU* 1.3 61.6 + - - +
100B VAL* 3.5 3.1 + - - +
101B LEU* 3.1 30.1 + - + +
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Residues in contact with LEU 98 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A VAL* 5.8 1.6 - - + -
94B TYR* 3.0 54.9 + - + +
95B ASN* 4.1 3.1 - - - +
97B GLU* 1.3 75.6 - - - +
99B LEU* 1.3 67.7 + - - +
101B LEU* 3.2 14.7 + - + +
102B LEU* 3.0 56.8 + - + +
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Residues in contact with LEU 99 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55B VAL* 4.2 27.8 - - + -
58B LYS* 5.9 5.4 - - + -
59B MET* 4.0 23.6 - - + -
95B ASN 2.9 20.4 + - - +
96B ALA* 4.1 3.1 - - - +
98B LEU* 1.3 77.9 - - - +
100B VAL* 1.3 62.7 + - + +
102B LEU* 4.6 11.4 - - + -
103B GLU* 2.9 54.3 + - + +
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Residues in contact with VAL 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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42A LEU* 3.8 28.3 - - + -
294A PHE* 5.7 1.1 - - + -
314A LEU* 4.1 13.9 - - + -
315A ARG 3.4 31.9 - - - +
316A MET* 4.4 7.6 - - + -
331A EDO 4.0 15.0 - - - +
55B VAL* 5.8 2.7 - - + -
96B ALA* 3.2 18.8 + - + +
97B GLU 3.7 4.5 - - - +
99B LEU* 1.3 77.2 - - + +
101B LEU* 1.3 58.0 + - - +
103B GLU* 4.0 2.6 - - - -
104B ASN* 2.9 42.6 + - - +
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Residues in contact with LEU 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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27A ASP* 3.4 44.2 - - + +
28A THR* 3.7 15.0 - - - +
29A VAL* 4.0 20.8 - - + +
331A EDO 5.0 8.7 - - - -
97B GLU* 3.1 22.9 + - + +
98B LEU* 3.2 14.6 + - + +
100B VAL* 1.3 75.7 - - - +
102B LEU* 1.3 63.6 + - + +
104B ASN* 3.7 2.3 - - - +
105B GLU* 3.1 22.2 + - - +
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Residues in contact with LEU 102 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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29A VAL* 4.0 12.1 - - + -
333A ETX 3.5 22.7 - - - +
98B LEU* 3.0 49.6 + - + +
99B LEU* 3.9 11.0 - - + +
101B LEU* 1.3 77.3 - - - +
103B GLU* 1.3 65.9 + - + +
105B GLU* 3.1 7.5 + - - +
106B ARG* 3.0 28.9 + - + +
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Residues in contact with GLU 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316A MET* 4.5 10.5 - - + -
51B LYS* 2.8 54.2 + - + +
55B VAL* 4.9 7.4 - - + -
99B LEU* 2.9 42.2 + - + +
100B VAL* 4.2 2.5 - - - +
102B LEU* 1.3 75.5 - - - +
104B ASN* 1.3 61.4 + - - +
106B ARG* 3.1 17.9 + - - +
107B THR* 2.7 34.2 + - - -
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Residues in contact with ASN 104 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A VAL* 3.6 11.5 - - + +
27A ASP 2.9 28.6 + - - +
28A THR* 3.9 8.7 - - + -
315A ARG 3.1 9.9 + - - -
316A MET* 3.4 10.9 - - - +
317A ALA* 2.9 28.7 + - + +
331A EDO 3.1 19.6 + - - -
100B VAL* 2.9 26.8 + - - +
101B LEU 3.7 1.8 - - - +
103B GLU* 1.3 74.1 - - - +
105B GLU* 1.3 62.4 + - - +
107B THR* 3.3 5.2 + - - -
108B LEU* 3.1 28.6 + - - +
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Residues in contact with GLU 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28A THR* 3.4 15.1 + - - +
29A VAL 3.2 5.4 + - - -
30A LEU* 3.1 48.8 + - - +
333A ETX 3.1 39.5 - - - +
101B LEU 3.1 10.8 + - - +
102B LEU 3.1 8.7 + - - +
104B ASN* 1.3 77.5 - - - +
106B ARG* 1.3 66.5 + - + +
108B LEU* 3.3 6.4 + - - +
109B ASP* 3.2 40.1 + - - +
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Residues in contact with ARG 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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333A ETX 6.3 0.4 - - - -
51B LYS* 3.8 11.0 - - - +
102B LEU* 3.0 19.0 + - - +
103B GLU* 3.1 23.9 + - - +
105B GLU* 1.3 79.5 - - + +
107B THR* 1.3 57.5 + - - +
109B ASP* 3.4 8.7 + - - +
110B PHE* 2.9 31.2 + - - +
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Residues in contact with THR 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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316A MET* 6.0 0.2 - - - +
317A ALA* 3.7 26.9 + - + +
318A THR 3.8 18.6 - - - +
319A GLY 3.8 12.3 - - - +
48B ILE* 3.8 10.5 - - + -
51B LYS* 2.7 34.7 + - - +
103B GLU 2.7 18.7 + - - -
104B ASN* 3.7 7.7 + - - -
106B ARG* 1.3 72.9 - - - +
108B LEU* 1.3 63.9 + - - +
110B PHE* 3.2 6.8 + - - +
111B HIS* 3.1 28.3 + - + -
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Residues in contact with LEU 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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26A VAL* 5.0 1.6 - - + -
28A THR* 3.9 22.4 - - + -
34A VAL* 3.9 27.1 - - + -
36A VAL* 3.9 19.1 - - + -
317A ALA* 4.4 8.7 - - + -
319A GLY 3.7 21.5 - - - +
320A LEU* 4.1 1.1 - - - +
321A ARG* 4.0 26.5 - - + +
332A GOL 3.8 19.3 + - - +
6B ILE* 4.7 0.3 - - - +
104B ASN 3.1 12.9 + - - +
105B GLU* 3.3 5.4 + - - +
107B THR* 1.3 75.0 - - - +
109B ASP* 1.3 57.0 + - - +
111B HIS* 3.4 7.1 + - - +
112B ASP* 3.1 25.8 + - - +
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Residues in contact with ASP 109 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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332A GOL 5.4 1.2 + - - -
1B GLY* 4.7 3.5 - - - -
2B LEU* 3.4 50.2 + - + +
3B PHE* 3.4 10.6 - - + -
105B GLU* 3.2 33.0 + - - +
106B ARG* 3.6 11.3 - - - +
108B LEU* 1.3 74.8 - - - +
110B PHE* 1.3 60.3 + - - +
112B ASP* 3.2 7.6 + - - +
113B SER* 2.8 31.0 + - - -
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Residues in contact with PHE 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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43B ASN* 4.5 5.8 - - + -
44B ALA* 3.8 33.0 - - + -
47B GLY* 4.8 7.2 - - - -
48B ILE* 4.0 27.1 - - + -
51B LYS* 5.8 2.2 - - - +
106B ARG 2.9 18.4 + - - +
107B THR* 3.5 5.8 - - - +
109B ASP* 1.3 75.8 - - - +
111B HIS* 1.3 68.7 + - - +
113B SER* 3.2 8.7 + - - -
114B ASN* 2.9 55.1 + - - +
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Residues in contact with HIS 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A THR 2.7 26.2 + - - -
319A GLY 3.2 23.0 + - - -
320A LEU* 3.6 20.5 - - + +
6B ILE* 3.7 5.8 - - + -
21B TRP* 3.5 34.0 - + - -
22B TYR* 2.6 35.6 + - + +
44B ALA* 4.7 0.9 - - + -
48B ILE* 4.3 7.6 - - + +
107B THR* 3.1 26.2 + - + +
108B LEU* 3.7 6.5 - - - +
109B ASP 3.3 0.2 - - - -
110B PHE* 1.3 78.5 - + - +
112B ASP* 1.3 61.3 + - - +
114B ASN* 3.3 3.5 + - - +
115B VAL* 3.1 27.0 + - - +
----------------------------------------------------------
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Residues in contact with ASP 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
332A GOL 4.3 4.4 + - - +
1B GLY* 3.2 23.5 + - - -
3B PHE* 3.0 30.0 + - + +
4B GLY 3.4 2.6 + - - -
5B ALA* 3.1 9.5 + - - +
6B ILE* 3.0 42.5 + - + +
108B LEU 3.1 14.8 + - - +
109B ASP* 3.2 13.2 + - - +
111B HIS* 1.3 74.5 - - - +
113B SER* 1.3 57.4 + - - +
115B VAL* 3.2 4.5 + - - +
116B ARG* 2.9 26.9 + - - +
----------------------------------------------------------
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Residues in contact with SER 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B PHE* 3.7 35.2 - - - -
109B ASP 2.8 13.5 + - - -
110B PHE* 3.4 14.3 - - - -
112B ASP* 1.3 77.1 - - - +
114B ASN* 1.3 54.2 + - - +
116B ARG* 3.2 2.4 + - - +
117B ASN* 2.7 53.6 + - - -
----------------------------------------------------------
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Residues in contact with ASN 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22B TYR* 2.9 42.3 + - + -
40B SER* 5.3 6.2 - - - -
44B ALA* 3.7 5.8 - - - +
110B PHE* 2.9 55.9 + - - +
111B HIS 3.3 7.4 + - - +
113B SER* 1.3 79.2 + - - +
115B VAL* 1.3 62.5 + - - +
117B ASN* 3.4 9.4 + - - +
118B LEU* 3.1 23.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A ILE* 4.2 8.2 - - + +
16A GLY 4.9 2.2 - - - +
17A TYR* 3.9 28.5 - - + -
5B ALA* 3.6 19.3 - - + -
6B ILE* 4.0 9.9 - - + -
10B ILE* 3.6 21.8 - - + -
22B TYR* 3.5 27.8 - - + -
111B HIS 3.1 14.2 + - - +
112B ASP 3.5 7.0 - - - +
114B ASN* 1.3 71.3 - - - +
116B ARG* 1.3 68.2 + - - +
118B LEU* 3.2 7.2 + - - +
119B TYR* 3.0 21.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B PHE* 2.9 48.2 + - + +
4B GLY* 4.7 2.0 - - - -
5B ALA* 3.9 7.8 - - + +
9B PHE* 3.9 24.4 - - + -
112B ASP 2.9 12.9 + - - +
113B SER* 3.5 8.3 - - - +
115B VAL* 1.3 79.0 - - - +
117B ASN* 1.3 61.9 + - - +
119B TYR* 3.3 6.1 + - - +
120B GLU* 3.0 56.6 + - + +
----------------------------------------------------------
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Residues in contact with ASN 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3B PHE* 6.0 1.0 - - - -
113B SER* 2.7 40.5 + - - +
114B ASN* 4.0 9.6 + - - +
116B ARG* 1.3 78.0 - - - +
118B LEU* 1.3 59.0 + - - +
120B GLU* 3.4 14.9 + - - +
121B LYS* 2.8 31.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A ILE* 4.1 17.3 - - + -
22B TYR* 4.0 20.4 - - + -
23B GLY* 4.0 12.3 - - - +
24B TYR* 3.6 28.0 - - + +
37B ASP* 4.0 22.4 - - + +
40B SER* 4.1 6.5 - - - +
114B ASN 3.1 16.8 + - - +
115B VAL* 3.7 4.9 - - - +
117B ASN* 1.3 72.7 - - - +
119B TYR* 1.3 66.8 + - - +
121B LYS* 3.2 10.9 + - + +
122B VAL* 3.0 27.5 + - + +
183B EDO 3.8 23.1 - - - +
----------------------------------------------------------
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Residues in contact with TYR 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
15A ILE* 4.0 17.6 - - + +
9B PHE* 3.9 31.6 - + + -
10B ILE* 4.9 1.6 - - + -
115B VAL 3.0 12.6 + - - +
116B ARG 3.5 7.9 - - - +
118B LEU* 1.3 78.6 - - - +
120B GLU* 1.3 68.4 + - + +
122B VAL* 3.2 2.4 + - - +
123B LYS* 2.9 41.3 + - + +
132B GLU* 2.5 42.7 + - - +
134B GLY* 5.8 1.9 + - - -
136B GLY* 3.7 37.2 + - - -
137B CYS 4.9 2.1 + - - -
138B PHE* 3.5 24.9 - + - -
----------------------------------------------------------
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Residues in contact with GLU 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116B ARG* 3.0 53.2 + - + +
117B ASN* 3.8 14.9 - - - +
119B TYR* 1.3 85.2 - - + +
121B LYS* 1.3 63.2 + - - +
123B LYS* 3.8 13.2 - - + +
124B SER* 3.0 26.0 + - - -
186B UNL 3.7 34.1 - - - +
----------------------------------------------------------
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Residues in contact with LYS 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B LYS* 5.8 4.7 - - - +
117B ASN 2.8 18.2 + - - +
118B LEU* 3.2 13.0 + - + +
120B GLU* 1.3 78.6 - - - +
122B VAL* 1.3 64.0 + - + +
124B SER* 3.5 6.1 + - - -
125B GLN* 3.1 30.8 + - + +
155B GLY* 6.5 0.2 - - - -
183B EDO 3.9 32.5 - - - +
----------------------------------------------------------
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Residues in contact with VAL 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A ILE* 4.7 2.5 - - + -
15A ILE* 3.8 23.1 - - + -
24B TYR* 3.9 20.0 - - + +
118B LEU* 3.0 22.1 + - + +
119B TYR 3.7 3.1 - - - +
121B LYS* 1.3 77.2 - - + +
123B LYS* 1.3 65.9 + - - +
125B GLN* 2.9 21.4 + - - +
126B LEU* 3.0 29.3 + - + +
138B PHE* 3.7 21.5 - - + -
152B VAL* 3.9 20.9 - - + +
----------------------------------------------------------
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Residues in contact with LYS 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B TYR* 2.9 28.3 + - + +
120B GLU* 3.8 11.3 - - + +
122B VAL* 1.3 76.1 - - - +
124B SER* 1.3 57.5 + - - +
126B LEU* 3.9 1.1 - - - +
127B LYS* 3.0 31.2 + - - +
132B GLU* 3.2 39.1 + - + +
138B PHE* 3.7 25.7 - - + -
----------------------------------------------------------
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Residues in contact with SER 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B GLU 3.0 20.0 + - - -
121B LYS* 3.8 6.3 - - - -
122B VAL 3.1 0.2 - - - -
123B LYS* 1.3 79.1 - - - +
125B GLN* 1.3 59.7 + - - +
127B LYS* 3.4 19.7 - - - +
186B UNL 3.1 45.2 + - - -
----------------------------------------------------------
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Residues in contact with GLN 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B LYS* 3.1 21.3 + - + +
122B VAL* 2.9 18.4 + - - +
124B SER* 1.3 80.0 - - - +
126B LEU* 1.3 65.3 + - + +
127B LYS* 3.6 11.3 + - - +
151B SER 4.0 0.2 - - - +
152B VAL* 3.0 34.2 + - - +
155B GLY* 3.2 23.2 - - - +
157B TYR* 3.1 54.7 + - + +
159B TYR* 4.3 2.4 - - - +
183B EDO 5.4 0.8 + - - -
----------------------------------------------------------
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Residues in contact with LEU 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
13A ILE* 4.3 4.0 - - + -
122B VAL* 3.0 28.4 + - + +
123B LYS* 4.1 3.1 - - - +
125B GLN* 1.3 75.8 - - + +
127B LYS* 1.3 72.0 + - - +
129B ASN* 3.1 22.5 + - - +
130B ALA* 3.6 31.9 - - + -
138B PHE* 3.8 28.0 - - + -
140B PHE* 3.9 14.4 - - + -
152B VAL* 3.9 22.7 - - + -
157B TYR* 3.7 32.1 - - + -
159B TYR* 3.6 3.6 - - - -
----------------------------------------------------------
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Residues in contact with LYS 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B LYS* 3.0 15.9 + - - +
124B SER* 3.4 21.5 - - - +
125B GLN 4.1 4.7 - - - +
126B LEU* 1.3 82.4 - - - +
128B ASN* 1.3 61.7 + - - +
129B ASN 3.4 2.3 + - - -
130B ALA 3.5 12.6 + - - +
159B TYR* 3.6 46.9 - - + +
186B UNL 5.7 3.4 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il