Contacts of the helix formed by residues 36 - 67 (chain F) in PDB entry 3GHG


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with VAL 36 (chain F).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62D  PHE*     3.4    28.5    -      -       +      -
     93E  ILE*     5.2     6.1    -      -       +      -
     94E  ARG*     6.6     0.4    -      -       +      -
     97E  VAL*     3.6    36.8    -      -       +      -
     32F  TYR*     3.4    23.3    -      -       +      +
     35F  LYS*     1.3    84.9    -      -       +      +
     37F  ASP*     1.3    62.4    +      -       -      +
     38F  LYS      3.3     2.0    -      -       -      -
     39F  ASP*     2.9    28.9    +      -       +      +
     40F  LEU*     3.1    18.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 37 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62D  PHE*     3.9    14.4    -      -       +      -
     65D  ARG*     3.0    32.6    +      -       -      -
     33F  GLN*     3.1    30.8    -      -       -      +
     34F  THR*     3.1     5.2    +      -       -      -
     36F  VAL*     1.3    80.3    -      -       -      +
     38F  LYS*     1.3    52.3    +      -       -      +
     40F  LEU*     3.1     8.9    +      -       -      +
     41F  GLN*     2.6    55.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 38 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34F  THR*     3.3    15.8    +      -       +      +
     35F  LYS      5.9     0.4    -      -       -      -
     36F  VAL      3.3     0.8    -      -       -      -
     37F  ASP*     1.3    77.5    -      -       -      +
     39F  ASP*     1.3    56.4    +      -       -      +
     41F  GLN*     3.5    19.1    +      -       -      +
     42F  SER*     3.0    26.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASP 39 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     97E  VAL*     4.9     9.9    -      -       +      +
    101E  ASN*     3.8    26.6    +      -       -      +
     35F  LYS      5.5     1.5    +      -       -      +
     36F  VAL*     2.9    18.4    +      -       +      +
     38F  LYS*     1.3    77.1    -      -       -      +
     40F  LEU*     1.3    54.6    +      -       +      +
     42F  SER*     3.1     9.5    +      -       -      -
     43F  LEU*     2.8    51.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 40 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62D  PHE*     3.3    43.1    -      -       +      -
     65D  ARG*     3.8    23.6    -      -       +      +
     66D  ILE*     3.5    32.1    -      -       +      -
     69D  LEU*     6.3     2.2    -      -       +      -
     93E  ILE*     6.2     0.9    -      -       +      -
     97E  VAL*     4.6    13.7    -      -       +      -
    100E  LEU*     4.9     1.8    -      -       +      -
     36F  VAL*     3.1    19.5    +      -       +      +
     37F  ASP*     3.4    12.1    -      -       -      +
     39F  ASP*     1.3    77.0    -      -       +      +
     41F  GLN*     1.3    52.1    +      -       -      +
     43F  LEU*     2.9    16.1    +      -       +      +
     44F  GLU*     2.5    40.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 41 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65D  ARG*     4.0     6.7    -      -       -      +
     37F  ASP*     2.6    54.5    +      -       -      +
     38F  LYS*     3.5    20.5    -      -       +      +
     40F  LEU*     1.3    71.5    -      -       -      +
     42F  SER*     1.3    59.1    +      -       -      +
     43F  LEU      3.3     0.5    +      -       -      -
     44F  GLU*     3.5    10.1    +      -       -      +
     45F  ASP*     2.9    36.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 42 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38F  LYS*     3.0    19.8    +      -       -      -
     39F  ASP*     3.1    12.8    +      -       -      -
     41F  GLN*     1.3    75.0    -      -       -      +
     43F  LEU*     1.3    59.3    +      -       -      +
     45F  ASP*     4.0    10.5    -      -       -      +
     46F  ILE*     3.5    26.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 43 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     69D  LEU*     4.4    10.8    -      -       +      +
     97E  VAL*     5.4     3.6    -      -       +      +
    100E  LEU*     4.4    33.9    -      -       +      +
    101E  ASN*     4.2    16.6    -      -       -      +
    104E  VAL*     4.8    12.3    -      -       +      -
    105E  GLU*     5.9     4.3    -      -       +      +
     39F  ASP*     2.8    41.8    +      -       -      +
     40F  LEU*     2.9    17.7    +      -       +      +
     42F  SER*     1.3    81.4    -      -       -      +
     44F  GLU*     1.3    66.1    +      -       -      +
     45F  ASP      3.1     1.3    -      -       -      -
     46F  ILE*     3.2    28.2    +      -       +      +
     47F  LEU*     3.5    14.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 44 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     65D  ARG*     3.2    45.4    +      -       -      +
     69D  LEU*     4.5    22.7    -      -       +      +
     40F  LEU*     2.5    21.5    +      -       +      +
     41F  GLN*     3.8    10.6    -      -       -      +
     43F  LEU*     1.3    71.4    -      -       -      +
     45F  ASP*     1.3    68.2    +      -       -      +
     47F  LEU*     3.7     3.1    +      -       -      +
     48F  HIS*     3.6    26.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 45 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41F  GLN*     2.9    25.3    -      -       -      +
     42F  SER*     4.0    10.1    -      -       -      +
     44F  GLU*     1.3    76.9    -      -       -      +
     46F  ILE*     1.3    57.3    +      -       +      +
     47F  LEU      2.9     1.4    +      -       -      -
     48F  HIS*     3.0     4.7    +      -       -      -
     49F  GLN*     2.5    56.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 46 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104E  VAL*     3.8    29.2    -      -       +      -
    105E  GLU*     6.4     2.0    -      -       +      -
    108E  SER*     4.3    16.6    -      -       -      +
     42F  SER*     3.5    17.5    -      -       -      +
     43F  LEU*     3.2    21.5    +      -       +      +
     45F  ASP*     1.3    78.6    -      -       +      +
     47F  LEU*     1.3    53.8    +      -       +      +
     49F  GLN*     4.1     6.1    -      -       -      -
     50F  VAL*     2.7    60.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with LEU 47 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68D  LYS*     4.8     0.9    -      -       +      +
     69D  LEU*     3.3    40.2    -      -       +      +
     72D  SER*     3.7    40.4    -      -       -      +
     73D  LEU*     5.5     2.9    -      -       -      +
     76D  TYR*     6.2     2.7    -      -       +      -
    104E  VAL*     5.5    11.9    -      -       +      -
     43F  LEU      3.5     5.5    +      -       -      +
     44F  GLU      4.0     6.1    -      -       -      +
     45F  ASP      2.9     2.0    +      -       -      -
     46F  ILE*     1.3    82.1    -      -       +      +
     48F  HIS*     1.3    64.1    +      -       +      +
     50F  VAL*     3.5     7.7    -      -       +      +
     51F  GLU*     2.7    35.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with HIS 48 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     68D  LYS*     5.9     7.4    -      -       +      -
     44F  GLU*     3.6    15.8    +      -       +      +
     45F  ASP*     3.0     5.6    +      -       -      +
     47F  LEU*     1.3    87.6    -      -       +      +
     49F  GLN*     1.3    62.1    +      -       +      +
     51F  GLU*     3.5    13.2    -      -       +      +
     52F  ASN*     3.4    24.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 49 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45F  ASP*     2.5    54.9    +      -       +      +
     46F  ILE*     4.1     4.3    -      -       -      +
     48F  HIS*     1.3    73.4    -      -       +      +
     50F  VAL*     1.3    58.4    +      -       +      +
     51F  GLU      3.2     1.1    -      -       -      -
     52F  ASN*     3.5     7.1    +      -       -      +
     53F  LYS*     3.3    47.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 50 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76D  TYR*     5.0    16.2    -      -       +      -
    108E  SER*     5.7     2.5    -      -       -      +
    111E  SER*     4.5    17.7    -      -       -      +
    115E  PHE*     5.3     3.1    -      -       +      -
     46F  ILE*     2.7    50.5    +      -       +      +
     47F  LEU*     3.7    11.2    -      -       +      +
     49F  GLN*     1.3    72.6    -      -       +      +
     51F  GLU*     1.3    55.1    +      -       -      +
     53F  LYS*     3.8    24.0    -      -       +      +
     54F  THR*     2.6    36.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 51 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47F  LEU      2.7    23.2    +      -       -      +
     48F  HIS*     3.5    17.9    -      -       +      +
     49F  GLN      3.2     0.6    -      -       -      -
     50F  VAL*     1.3    73.7    -      -       -      +
     52F  ASN*     1.3    65.1    +      -       -      +
     53F  LYS      3.2     1.3    -      -       -      -
     54F  THR*     3.3    15.6    -      -       -      +
     55F  SER*     3.1    30.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with ASN 52 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     48F  HIS      3.4    13.2    +      -       -      +
     49F  GLN*     3.5     8.0    +      -       -      +
     51F  GLU*     1.3    83.3    -      -       -      +
     53F  LYS*     1.3    60.9    +      -       +      +
     55F  SER*     4.2     9.2    -      -       -      -
     56F  GLU*     4.2    10.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LYS 53 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115E  PHE*     3.7    22.6    -      -       +      -
     49F  GLN*     3.3    38.9    +      -       -      +
     50F  VAL*     3.8    21.6    -      -       +      +
     51F  GLU      3.2     0.6    -      -       -      -
     52F  ASN*     1.3    79.9    -      -       +      +
     54F  THR*     1.3    61.6    +      -       -      +
     55F  SER      3.2     1.1    -      -       -      -
     56F  GLU*     3.5    20.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 54 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     76D  TYR*     3.7    19.7    -      -       +      -
     79D  ASN*     4.4    17.1    +      -       -      +
    115E  PHE*     3.6    24.2    -      -       -      -
     50F  VAL      2.6    21.9    +      -       -      +
     51F  GLU*     3.2    35.9    -      -       -      +
     53F  LYS*     1.3    70.7    -      -       -      +
     55F  SER*     1.3    66.8    +      -       -      +
     56F  GLU      3.2     0.9    -      -       -      -
     57F  VAL*     3.6     5.0    +      -       -      +
     58F  LYS*     3.2    21.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 55 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51F  GLU*     3.1    24.3    +      -       -      -
     52F  ASN*     4.2    10.5    -      -       -      -
     53F  LYS      3.2     0.2    -      -       -      -
     54F  THR*     1.3    78.6    -      -       -      +
     56F  GLU*     1.3    54.2    +      -       -      +
     58F  LYS*     4.0     9.2    -      -       -      +
     59F  GLN*     2.5    70.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 56 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    115E  PHE*     6.4     0.2    -      -       +      -
    119E  TYR*     4.8    17.6    +      -       +      -
     52F  ASN      4.2     5.4    +      -       -      +
     53F  LYS*     3.5    20.9    +      -       +      +
     54F  THR      3.2     0.8    -      -       -      -
     55F  SER*     1.3    78.9    -      -       -      +
     57F  VAL*     1.3    60.1    +      -       +      +
     59F  GLN*     4.6     7.5    -      -       -      +
     60F  LEU*     3.2    40.5    +      -       +      +
----------------------------------------------------------
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Residues in contact with VAL 57 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83D  SER*     4.9    17.5    -      -       -      -
    114E  SER      5.0     3.1    -      -       -      +
    115E  PHE*     3.3    45.8    -      -       +      +
    118E  MET*     4.2    26.2    -      -       +      -
     53F  LYS      4.1     0.8    +      -       -      -
     54F  THR      3.6     5.6    +      -       -      +
     56F  GLU*     1.3    80.6    -      -       +      +
     58F  LYS*     1.3    58.8    +      -       -      +
     60F  LEU*     3.4     4.8    +      -       -      +
     61F  ILE*     3.1    41.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 58 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     79D  ASN*     5.5    12.3    +      -       -      +
     54F  THR*     3.2    18.5    +      -       +      +
     55F  SER*     3.1    10.9    +      -       -      +
     57F  VAL*     1.3    75.6    -      -       -      +
     59F  GLN*     1.3    65.5    +      -       +      +
     61F  ILE*     3.5    22.5    +      -       +      +
     62F  LYS*     4.0     5.9    +      -       -      +
     65F  GLN*     6.1     0.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 59 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55F  SER*     2.5    44.7    +      -       -      +
     56F  GLU*     4.6     7.9    -      -       -      +
     58F  LYS*     1.3    73.4    -      -       +      +
     60F  LEU*     1.3    59.3    +      -       -      +
     61F  ILE      3.5     0.5    +      -       -      -
     62F  LYS*     3.7    16.1    +      -       -      +
     63F  ALA*     4.3     3.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 60 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    118E  MET*     3.4    41.5    -      -       +      -
    119E  TYR*     6.2     2.2    -      -       +      -
    122E  LYS*     4.0    31.4    -      -       +      +
     56F  GLU*     3.2    31.0    +      -       +      +
     57F  VAL      3.8     4.0    -      -       -      +
     58F  LYS      3.3     0.4    -      -       -      -
     59F  GLN*     1.3    78.9    -      -       -      +
     61F  ILE*     1.3    61.7    +      -       +      +
     62F  LYS      3.4     0.2    -      -       -      -
     63F  ALA*     3.4    19.3    +      -       +      +
     64F  ILE*     3.4    13.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 61 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     83D  SER*     6.2     1.1    -      -       -      -
     86D  LEU*     3.0    48.0    -      -       +      -
     90D  ILE*     4.5     7.2    -      -       +      -
    118E  MET*     6.0     6.3    -      -       +      -
     57F  VAL*     3.1    38.1    +      -       +      +
     58F  LYS*     3.8    16.2    -      -       +      +
     59F  GLN      3.3     0.8    -      -       -      -
     60F  LEU*     1.3    74.5    -      -       +      +
     62F  LYS*     1.3    59.7    +      -       -      +
     63F  ALA      3.1     2.2    -      -       -      -
     64F  ILE*     3.1    18.5    +      -       +      +
     65F  GLN*     3.0    48.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with LYS 62 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58F  LYS      4.0     5.5    +      -       -      +
     59F  GLN*     3.7    12.2    +      -       -      +
     60F  LEU      3.4     0.6    -      -       -      -
     61F  ILE*     1.3    77.8    -      -       -      +
     63F  ALA*     1.3    57.8    +      -       -      +
     64F  ILE      3.5     0.2    -      -       -      -
     65F  GLN*     4.1    10.0    -      -       +      +
     66F  LEU*     3.4    44.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 63 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59F  GLN      4.3     3.2    +      -       -      +
     60F  LEU*     3.4    20.9    +      -       +      +
     61F  ILE      3.1     0.8    -      -       -      -
     62F  LYS*     1.3    78.6    -      -       -      +
     64F  ILE*     1.3    58.9    +      -       -      +
     65F  GLN      3.4     0.4    -      -       -      -
     66F  LEU*     4.4     5.6    -      -       -      +
     67F  THR*     3.4    23.6    +      -       -      -
     68F  TYR*     4.8     2.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with ILE 64 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     86D  LEU*     5.7     1.1    -      -       +      -
     90D  ILE*     3.7    30.6    -      -       +      +
     93D  ILE*     6.3     1.1    -      -       +      -
    122E  LYS*     5.2    13.7    -      -       +      +
    125E  TRP*     5.1     7.6    -      -       +      -
    126E  GLN*     5.2     1.1    -      -       -      +
     60F  LEU*     3.4     8.1    +      -       +      +
     61F  ILE*     3.1    46.3    +      -       +      +
     63F  ALA*     1.3    77.6    -      -       -      +
     65F  GLN*     1.3    65.3    +      -       +      +
     66F  LEU      3.7     0.2    -      -       -      -
     67F  THR      4.7     1.3    -      -       -      -
     68F  TYR*     3.9    44.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 65 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     86D  LEU*     3.7    19.1    -      -       +      +
     58F  LYS*     6.1     0.4    -      -       -      +
     61F  ILE*     3.0    39.6    +      -       +      +
     62F  LYS*     4.4    10.5    -      -       +      +
     63F  ALA      3.4     0.2    -      -       -      -
     64F  ILE*     1.3    83.5    -      -       +      +
     66F  LEU*     1.3    65.7    +      -       +      +
     68F  TYR      4.9     0.2    -      -       -      -
     69F  ASN*     3.8    20.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 66 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62F  LYS*     3.4    38.2    +      -       +      +
     63F  ALA*     4.4     3.8    +      -       -      +
     65F  GLN*     1.3    81.9    -      -       +      +
     67F  THR*     1.3    67.7    +      -       -      +
     69F  ASN*     4.4     8.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 67 (chain F). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     63F  ALA      3.4    15.2    +      -       -      -
     65F  GLN      3.6     0.4    -      -       -      -
     66F  LEU*     1.3    82.9    -      -       -      +
     68F  TYR*     1.3    98.5    +      -       +      +
     69F  ASN*     3.2    12.0    +      -       -      +
     72F  GLU*     4.5     7.6    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il