Contacts of the helix formed by residues 809 - 844 (chain M) in PDB entry 3HOU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 809 (chain M).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
802M ASN* 3.9 11.4 - - - +
808M LEU* 1.3 75.4 - - - +
810M PRO* 1.3 67.8 - - - +
811M GLN* 2.8 14.8 + - - +
812M GLU* 2.8 37.4 + - - +
813M PHE 2.6 28.8 + - - -
728N ARG* 4.0 14.1 - - - +
729N ILE 4.0 8.1 - - - +
730N ARG* 4.0 26.7 - - + +
731N VAL 5.6 0.2 - - - +
1047N PHE* 4.1 2.0 - - - -
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Residues in contact with PRO 810 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809M THR* 1.3 87.2 - - - +
811M GLN* 1.3 57.4 + - - +
813M PHE* 3.7 2.2 - - - +
814M PHE* 3.2 14.4 + - - +
519N TRP* 3.2 25.8 - - + -
705N MET* 3.6 34.1 - - + -
730N ARG* 4.0 15.5 - - + +
745N PRO* 3.4 35.2 - - + -
748N ILE* 4.4 1.4 - - - +
1047N PHE* 3.8 26.9 - - + -
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Residues in contact with GLN 811 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784M LEU* 3.7 29.6 - - + -
786M HIS* 3.6 15.2 + - + +
787M PHE* 4.2 20.2 - - + -
795M GLU 5.5 1.1 - - - +
809M THR* 2.8 19.3 + - - +
810M PRO* 1.3 74.8 - - - +
812M GLU* 1.3 69.0 + - + +
813M PHE 3.0 1.1 - - - -
814M PHE* 2.9 3.3 + - - +
815M PHE* 2.9 37.4 + - + -
519N TRP* 4.8 0.2 - - - -
705N MET* 3.1 38.3 - - - +
730N ARG* 6.0 0.9 - - - +
731N VAL* 5.7 5.7 - - - +
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Residues in contact with GLU 812 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
799M PHE 4.2 4.8 - - - +
800M VAL* 3.2 26.4 - - + +
801M GLU* 2.7 32.9 + - - +
802M ASN* 2.6 35.9 + - - -
808M LEU* 3.3 20.6 - - + +
809M THR* 2.8 40.2 + - - +
811M GLN* 1.3 74.6 - - + +
813M PHE* 1.3 56.2 + - - +
815M PHE* 3.8 5.7 - - - +
816M HIS* 2.9 26.5 + - - +
729N ILE 5.2 1.1 - - - -
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Residues in contact with PHE 813 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
808M LEU* 3.6 15.4 - - + +
809M THR 2.6 18.8 + - - +
810M PRO 3.7 4.3 - - - +
812M GLU* 1.3 75.1 - - - +
814M PHE* 1.3 68.2 + - - +
816M HIS* 3.3 2.8 + - + +
817M ALA* 3.0 23.9 + - + +
524N PRO* 3.9 17.0 - - + -
525N ALA* 5.2 6.5 - - + -
748N ILE* 4.2 17.3 - - + -
749N LEU* 3.8 30.3 - - + -
759N PRO* 3.7 31.4 - - + -
760N ASP* 4.1 16.8 - - + -
762N ASN 5.9 0.4 - - - -
764N SER* 6.2 2.2 - - - -
767N ASN* 3.9 14.6 - - - -
1047N PHE* 3.8 18.6 - + + -
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Residues in contact with PHE 814 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
784M LEU* 4.2 15.3 - - + -
810M PRO 3.2 3.5 + - - +
811M GLN* 2.9 6.2 + - - +
813M PHE* 1.3 83.9 - - + +
815M PHE* 1.3 61.3 + + + +
817M ALA* 3.2 6.3 - - - +
818M MET* 3.0 45.0 + - + +
514N LEU* 3.7 21.1 - - + -
515N HIS 3.1 28.0 - - - -
516N ASN* 4.1 9.0 - - - -
518N HIS 4.3 2.2 - - - -
519N TRP* 3.6 58.6 - + + -
520N GLY 5.3 0.2 - - - -
522N VAL 5.3 0.7 - - - -
524N PRO* 4.1 21.5 - - + -
748N ILE* 5.3 4.7 - - + -
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Residues in contact with PHE 815 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768M GLN* 3.6 10.5 - - + +
775M ILE* 4.0 24.1 - - + +
783M THR* 3.2 34.5 - - + -
784M LEU* 3.3 35.4 - - + -
787M PHE* 4.0 6.1 - + - -
795M GLU 4.9 1.8 - - - -
796M SER* 3.6 22.4 - - - -
798M GLY* 3.5 22.4 - - - -
799M PHE 5.1 1.1 - - - -
800M VAL* 5.3 1.3 - - + -
811M GLN* 2.9 29.6 + - + +
812M GLU* 3.8 7.0 - - - +
814M PHE* 1.3 79.7 - + - +
816M HIS* 1.3 68.2 + - - +
817M ALA 3.0 1.1 - - - -
818M MET* 3.0 9.8 + - - +
819M GLY 2.8 19.2 + - - -
516N ASN* 6.3 0.4 - - - -
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Residues in contact with HIS 816 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
760M GLN* 6.3 1.1 - - - -
765M VAL* 4.6 7.6 - - + +
768M GLN* 3.1 35.7 + - + +
800M VAL* 4.7 0.2 - - + -
804M TYR* 2.6 35.8 + + - -
808M LEU* 3.6 22.2 - - + -
812M GLU 2.9 18.6 + - - +
813M PHE* 3.6 4.7 - - + +
815M PHE* 1.3 76.5 - - - +
817M ALA* 1.3 52.6 + - - +
819M GLY* 3.0 2.3 + - - -
820M GLY* 2.7 35.0 + - - -
762N ASN 4.7 1.1 - - - -
763N GLN* 4.8 2.2 - - + -
764N SER* 3.3 31.4 + - - -
765N PRO* 4.6 4.9 - - + -
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Residues in contact with ALA 817 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
813M PHE* 3.0 17.1 + - + +
814M PHE* 3.2 12.3 - - - +
816M HIS* 1.3 75.0 - - - +
818M MET* 1.3 65.6 + - - +
820M GLY* 2.7 14.6 + - - -
821M ARG* 2.8 14.8 + - - +
514N LEU* 3.7 15.9 - - + -
524N PRO* 3.8 23.1 - - + +
525N ALA* 5.9 0.9 - - + -
764N SER* 3.4 14.3 + - - +
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Residues in contact with MET 818 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
770M VAL* 4.4 16.8 - - + +
775M ILE* 3.8 36.1 - - + -
776M ALA* 5.6 1.6 - - + +
814M PHE* 3.0 40.4 + - + +
815M PHE* 3.2 11.0 - - - +
817M ALA* 1.3 79.3 - - - +
819M GLY* 1.3 64.3 + - - +
821M ARG* 3.8 4.0 + - - +
822M GLU* 3.5 15.6 + - - +
513N GLN* 5.9 1.0 - - - +
514N LEU* 2.9 43.0 + - + +
515N HIS* 4.5 0.2 - - - -
516N ASN* 3.7 24.5 - - - +
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Residues in contact with GLY 819 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
768M GLN* 4.5 9.6 - - - -
769M SER 3.9 21.4 - - - +
770M VAL* 4.6 2.9 - - - +
775M ILE* 5.3 0.2 - - - -
815M PHE 2.8 13.0 + - - -
816M HIS 3.4 3.8 - - - -
817M ALA 2.8 0.6 + - - -
818M MET* 1.3 74.2 - - - +
820M GLY* 1.3 66.8 + - - +
822M GLU* 3.1 18.2 + - - +
823M GLY* 3.6 2.6 + - - -
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Residues in contact with GLY 820 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
816M HIS* 2.7 20.6 + - - -
817M ALA 2.7 4.4 + - - -
819M GLY* 1.3 65.4 - - - -
821M ARG* 1.3 50.6 + - - -
822M GLU 2.4 18.7 + - - -
823M GLY* 2.5 18.5 + - - -
824M LEU* 3.2 13.0 + - - +
764N SER* 3.9 13.5 - - - -
765N PRO* 4.8 9.6 - - - -
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Residues in contact with ARG 821 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
817M ALA 2.8 16.9 + - - +
818M MET 3.9 4.0 - - - +
820M GLY* 1.3 68.7 - - - -
822M GLU* 1.3 57.5 + - - +
824M LEU* 3.9 13.7 - - - +
825M ILE* 3.0 29.7 + - - +
512N ARG 3.1 23.7 + - - +
513N GLN* 4.0 5.1 - - + -
514N LEU* 3.6 43.6 - - + +
518N HIS* 5.9 0.6 - - - -
522N VAL* 5.6 0.4 - - - +
523N CYS 4.3 7.3 + - - -
524N PRO 3.1 27.3 + - - -
525N ALA* 5.0 0.6 + - - +
526N GLU 5.5 0.2 + - - -
527N THR* 3.7 29.6 - - - +
533N CYS* 4.3 12.3 - - - -
534N GLY* 3.7 9.9 + - - -
537N LYS* 5.1 10.7 - - - +
764N SER* 4.7 1.8 + - - -
768N THR* 5.6 1.4 + - - -
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Residues in contact with GLU 822 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
769M SER 3.4 6.1 - - - +
770M VAL* 3.0 28.6 - - + -
771M GLU* 3.2 22.9 + - - +
818M MET 3.5 8.5 + - - +
819M GLY 3.1 11.6 + - - +
820M GLY 2.4 13.3 + - - -
821M ARG* 1.3 69.8 - - - +
823M GLY* 1.3 68.8 + - - +
825M ILE* 3.1 12.3 + - + +
826M ASP* 3.2 20.4 + - - +
513N GLN* 2.9 33.0 + - + +
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Residues in contact with GLY 823 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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819M GLY 3.6 2.8 + - - -
820M GLY* 2.5 15.4 + - - -
822M GLU* 1.3 74.5 - - - +
824M LEU* 1.3 63.8 + - - -
825M ILE 2.9 1.0 + - - -
826M ASP* 3.2 8.4 + - - +
827M THR* 2.7 26.9 + - - -
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Residues in contact with LEU 824 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
820M GLY 3.2 7.6 + - - +
821M ARG* 3.9 17.5 - - - +
823M GLY* 1.3 73.2 - - - +
825M ILE* 1.3 66.6 + - - +
827M THR* 3.0 27.3 - - + +
828M ALA* 3.1 7.8 + - - +
527N THR* 5.0 3.8 - - + -
528N PRO 6.0 0.2 - - - +
529N GLU* 4.8 11.2 - - + +
530N GLY 5.1 1.2 + - - -
533N CYS* 4.2 18.5 - - - -
765N PRO* 4.4 16.6 - - + -
768N THR* 3.8 37.7 - - + +
769N TYR* 3.9 29.4 - - + +
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Residues in contact with ILE 825 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
821M ARG* 3.0 27.8 + - - +
822M GLU* 3.1 8.4 + - + +
823M GLY 2.9 2.2 + - - -
824M LEU* 1.3 77.0 - - - +
826M ASP* 1.3 61.7 + - + +
828M ALA* 2.6 24.9 + - - +
829M VAL* 3.1 20.8 + - + +
508N LEU* 4.8 2.7 - - + -
509N ALA* 4.4 9.4 - - - +
512N ARG* 3.3 63.5 - - + +
513N GLN* 3.4 24.2 - - + +
533N CYS* 4.2 11.0 - - + -
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Residues in contact with ASP 826 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
822M GLU* 3.2 13.7 + - - +
823M GLY* 3.2 13.2 + - - +
825M ILE* 1.3 81.3 - - + +
827M THR* 1.3 79.4 + - - +
829M VAL* 3.6 12.8 - - + -
830M LYS* 2.4 65.1 + - + +
1081M LEU 5.0 10.6 + - - -
508N LEU* 5.7 3.8 - - + -
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Residues in contact with THR 827 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
823M GLY 2.7 17.1 + - - -
824M LEU* 3.0 31.9 - - + +
826M ASP* 1.3 83.0 + - - +
828M ALA* 1.3 59.2 + - + +
830M LYS* 4.1 6.1 - - - +
831M THR* 3.2 24.1 + - - +
1080M THR* 5.5 5.2 + - - +
530N GLY 5.9 1.6 - - - +
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Residues in contact with ALA 828 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
824M LEU 3.5 9.4 - - - +
825M ILE* 2.6 13.4 + - - +
827M THR* 1.3 80.8 - - + +
829M VAL* 1.3 56.9 + - + +
831M THR* 2.9 24.5 - - - +
832M ALA* 4.3 5.0 + - - +
530N GLY* 3.3 38.4 - - - +
531N GLN* 4.3 5.1 + - - +
533N CYS* 5.0 3.1 - - + -
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Residues in contact with VAL 829 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
825M ILE* 3.1 24.7 - - + +
826M ASP* 2.8 12.3 + - + +
828M ALA* 1.3 79.2 - - + +
830M LYS* 1.3 65.7 + - - +
831M THR 2.8 6.6 + - - -
832M ALA* 3.0 6.5 + - + +
833M GLU* 3.0 32.8 + - + +
508N LEU* 3.7 47.6 - - + -
512N ARG* 5.5 4.3 - - - +
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Residues in contact with LYS 830 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
826M ASP* 2.4 60.6 + - + +
827M THR* 4.1 6.7 - - - +
829M VAL* 1.3 66.9 - - - +
831M THR* 1.3 49.5 + - - +
833M GLU* 4.8 4.7 - - - -
834M THR* 2.8 39.8 + - - -
1079M MET 3.9 15.5 - - - +
1080M THR* 5.8 0.9 - - - -
1081M LEU* 3.5 40.8 - - - +
1098M VAL* 3.9 21.9 - - + +
1099M PRO* 3.7 19.8 - - - +
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Residues in contact with THR 831 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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184 A 3.7 39.1 + - + +
827M THR 3.2 11.8 + - - +
828M ALA* 2.9 36.3 - - - +
829M VAL 2.8 0.8 + - - -
830M LYS* 1.3 76.8 - - - +
832M ALA* 1.3 65.6 + - + +
833M GLU 3.2 0.9 - - - -
834M THR* 3.0 11.5 - - - +
835M GLY* 2.8 24.4 + - - -
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Residues in contact with ALA 832 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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174 T 4.3 3.9 - - - +
184 A 3.2 46.6 - - + +
828M ALA 4.7 4.7 - - - +
829M VAL* 3.0 8.2 + - + +
831M THR* 1.3 82.6 - - + +
833M GLU* 1.3 63.1 + - - +
836M TYR* 3.1 20.6 + - - +
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Residues in contact with GLU 833 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
25 C 5.3 6.2 - - - +
829M VAL* 3.0 24.7 + - + +
830M LYS* 4.2 3.0 - - - +
832M ALA* 1.3 76.4 - - - +
834M THR* 1.3 68.5 + - - +
836M TYR* 3.3 6.6 + - + +
837M ILE* 3.2 29.9 + - + +
840M ARG* 6.1 0.7 - - - +
1098M VAL* 4.5 16.4 - - + +
1099M PRO* 5.1 5.7 - - - +
1102M LYS* 2.9 46.8 + - + +
508N LEU* 5.6 7.2 - - - +
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Residues in contact with THR 834 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
830M LYS 2.8 19.8 + - - +
831M THR* 3.0 18.8 - - - +
833M GLU* 1.3 78.5 - - - +
835M GLY* 1.3 78.6 + - - +
837M ILE* 3.2 8.0 + - - +
838M GLN* 3.1 21.0 + - - +
1073M GLY 5.1 0.2 + - - -
1076M ALA* 3.0 33.1 + - - +
1077M THR* 3.2 34.8 + - + +
1098M VAL* 4.5 11.5 - - - +
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Residues in contact with GLY 835 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184 A 3.6 21.3 - - - -
831M THR 2.8 10.4 + - - -
832M ALA 3.5 0.4 + - - -
833M GLU 3.1 0.2 - - - -
834M THR* 1.3 87.1 - - - +
836M TYR* 1.3 62.1 + - - +
838M GLN* 3.0 18.9 + - - +
839M ARG* 3.1 12.0 + - - +
1133N MET* 5.3 3.5 - - - +
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Residues in contact with TYR 836 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164 T 4.0 7.8 + - - -
174 T 3.6 46.2 - - - -
184 A 3.7 7.8 - - - -
832M ALA 3.1 15.1 + - - +
833M GLU* 3.3 6.7 + - + +
835M GLY* 1.3 74.0 - - - +
837M ILE* 1.3 63.0 + - - +
839M ARG* 3.2 14.1 + - + +
840M ARG* 3.0 63.3 + - + +
1102M LYS* 6.5 0.9 - - - -
1386M ARG* 5.4 1.0 + - - -
1402M PHE* 4.6 3.0 - + - -
1403M GLU* 2.6 43.9 + - - -
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Residues in contact with ILE 837 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833M GLU* 3.2 15.7 + - + +
834M THR* 3.4 9.6 - - - +
836M TYR* 1.3 76.8 - - - +
838M GLN* 1.3 66.2 + - - +
840M ARG* 3.3 29.6 + - - +
841M LEU* 2.9 30.7 + - + +
1073M GLY* 5.8 1.3 - - - -
1076M ALA* 5.8 4.0 - - + -
1098M VAL* 4.4 15.0 - - + +
1101M LEU* 4.2 22.0 - - + -
1102M LYS* 4.1 33.0 - - + +
1105M LEU* 3.5 23.9 - - + +
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Residues in contact with GLN 838 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
449M SER 4.5 0.8 + - - -
450M LEU* 3.2 56.4 + - + +
834M THR 3.1 9.2 + - - +
835M GLY* 3.0 13.6 + - - +
837M ILE* 1.3 82.6 - - - +
839M ARG* 1.3 61.6 + - - +
841M LEU* 3.6 6.2 + - - +
842M VAL* 3.2 33.2 + - - +
1069M ALA 5.9 0.4 - - - -
1070M GLN* 4.8 4.9 - - - +
1073M GLY* 3.7 29.2 - - - +
1074M GLU 4.6 3.6 - - - +
1077M THR* 4.8 2.7 - - - +
1133N MET* 4.1 15.9 - - + +
1136N ASP* 5.4 0.7 - - - +
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Residues in contact with ARG 839 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174 T 4.3 2.7 + - - -
184 A 6.1 1.1 - - - -
194 T 5.8 2.0 - - - -
337M ARG* 3.3 42.4 - - - +
835M GLY 3.1 10.7 + - - +
836M TYR* 3.2 18.5 + - + +
838M GLN* 1.3 76.5 + - - +
840M ARG* 1.3 58.9 + - - +
842M VAL* 2.9 7.9 + - - +
843M LYS* 2.7 42.7 + - + +
1401M SER 3.0 27.5 + - - -
1402M PHE* 3.1 35.3 - - + +
1403M GLU* 3.9 7.7 + - - +
1132N GLU* 3.0 27.6 + - - -
1133N MET* 5.6 5.5 - - + +
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Residues in contact with ARG 840 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
833M GLU* 6.1 1.0 - - - +
836M TYR* 3.0 63.7 + - + +
837M ILE* 3.3 33.0 - - - +
839M ARG* 1.3 78.8 - - - +
841M LEU* 1.3 63.7 + - - +
843M LYS* 3.3 2.5 + - - +
844M ALA* 3.1 25.5 + - - +
1102M LYS* 4.6 7.9 + - - +
1105M LEU* 4.0 17.5 - - + +
1106M ASN* 3.1 37.0 + - - +
1384M VAL* 3.3 31.6 + - + +
1385M THR* 4.6 3.7 + - - +
1389M PHE* 4.1 2.3 - - + -
1402M PHE* 3.8 26.7 - - + -
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Residues in contact with LEU 841 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
837M ILE* 2.9 25.9 + - + +
838M GLN* 3.6 5.6 - - - +
840M ARG* 1.3 74.8 - - - +
842M VAL* 1.3 64.9 + - - +
844M ALA* 2.9 12.5 + - - +
845M LEU* 3.3 21.7 + - + +
1069M ALA* 3.6 31.4 - - + +
1072M ILE* 3.8 26.9 - - + -
1073M GLY* 3.9 10.5 - - - +
1105M LEU* 4.0 21.1 - - + -
1371M LEU* 3.6 33.4 - - + -
1384M VAL* 3.9 9.1 - - + +
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Residues in contact with VAL 842 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
838M GLN* 3.2 27.4 - - - +
839M ARG* 2.9 8.6 + - - +
841M LEU* 1.3 76.8 - - - +
843M LYS* 1.3 64.4 + - + +
845M LEU 4.6 0.2 - - - +
846M GLU* 3.0 24.9 + - - +
1066M VAL* 4.6 13.2 - - + +
1069M ALA* 3.7 22.2 - - + -
1070M GLN* 4.5 13.9 - - + +
1135N ARG* 4.4 9.0 - - - +
1136N ASP* 2.8 38.4 - - + +
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Residues in contact with LYS 843 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
341M MET* 3.2 24.0 - - - +
839M ARG* 2.7 34.0 + - + +
840M ARG 3.9 4.0 - - - +
841M LEU 3.2 0.2 - - - -
842M VAL* 1.3 75.9 - - + +
844M ALA* 1.3 58.6 + - - +
845M LEU 3.4 0.4 + - - -
846M GLU* 3.2 34.9 + - + +
847M ASP* 5.6 0.3 - - - +
1389M PHE* 3.6 16.2 - - + -
1401M SER* 2.7 40.2 + - - +
1402M PHE* 4.2 30.3 - - + -
1425M SER* 3.3 0.8 + - - -
1132N GLU* 4.5 7.0 - - - -
1135N ARG* 3.2 18.9 - - - +
----------------------------------------------------------
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Residues in contact with ALA 844 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
840M ARG 3.1 15.1 + - - +
841M LEU* 2.9 6.5 + - - +
843M LYS* 1.3 79.5 - - - +
845M LEU* 1.3 71.2 + - + +
846M GLU 3.8 0.2 - - - -
847M ASP* 4.9 3.8 - - - +
848M ILE* 4.8 1.7 - - - +
1371M LEU* 6.2 1.1 - - + -
1374M VAL* 4.2 11.0 - - + +
1384M VAL* 4.0 11.4 - - + -
1389M PHE* 3.7 37.1 - - + +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il