Contacts of the helix formed by residues 37 - 66 (chain S) in PDB entry 3J9X


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with VAL 37 (chain S).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2327    T      3.9    22.2    -      -       -      +
    2337    A      3.9     4.7    -      -       -      +
     16R  LYS*     4.7    10.5    -      -       +      -
     19R  ALA*     3.7    17.7    -      -       +      -
     20R  LYS*     3.6    29.8    -      -       +      -
     33S  ILE      3.0    20.7    +      -       -      +
     34S  LEU*     3.5    15.3    -      -       +      +
     36S  ASN*     1.3    75.3    -      -       -      +
     38S  SER*     1.3    69.0    +      -       -      +
     39S  PRO*     3.5     1.3    -      -       -      -
     40S  VAL*     3.9     8.1    -      -       +      -
     41S  ALA*     2.9    21.6    +      -       +      +
     21T  PHE*     4.5     9.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 38 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34S  LEU      2.6    23.0    +      -       -      -
     35S  SER*     3.3    15.8    -      -       -      -
     37S  VAL*     1.3    81.1    -      -       -      +
     39S  PRO*     1.4    72.8    -      -       -      +
     41S  ALA*     2.9    10.7    +      -       -      +
     42S  GLN*     2.9    27.2    +      -       -      +
     21T  PHE*     3.5    22.4    -      -       -      -
     22T  ASN*     5.5     2.1    +      -       -      -
     25T  SER*     4.7     4.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with PRO 39 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35S  SER      4.0     4.0    -      -       -      +
     36S  ASN      3.6    12.1    -      -       -      +
     37S  VAL      3.5     1.8    -      -       -      -
     38S  SER*     1.4    97.2    -      -       -      +
     40S  VAL*     1.3    67.7    +      -       +      +
     42S  GLN*     3.5    20.2    -      -       -      +
     43S  GLN*     3.1    21.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 40 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2327    T      4.8     1.6    -      -       -      +
     12R  GLN*     5.0     1.8    -      -       -      +
     15R  ALA*     4.1    30.5    -      -       +      +
     16R  LYS*     3.9    33.0    -      -       +      +
     19R  ALA*     4.5     3.8    -      -       +      -
     36S  ASN      4.3    13.2    -      -       -      +
     37S  VAL*     3.5    12.8    -      -       +      +
     38S  SER      3.0     0.4    +      -       -      -
     39S  PRO*     1.3    78.9    -      -       +      +
     41S  ALA*     1.3    66.7    +      -       -      +
     43S  GLN*     3.1     9.6    +      -       -      +
     44S  ASN*     3.1    32.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 41 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2317    A      3.9     4.4    -      -       -      +
    2327    T      3.5    38.6    -      -       -      +
     37S  VAL      2.9    18.7    +      -       -      +
     38S  SER      3.4     3.1    -      -       -      +
     40S  VAL*     1.3    76.4    -      -       -      +
     42S  GLN*     1.3    57.6    +      -       -      +
     44S  ASN*     3.1     2.4    +      -       -      +
     45S  PHE*     2.8    31.2    +      -       -      +
     17T  TRP*     4.1    15.2    -      -       +      -
     21T  PHE*     4.5     8.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 42 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38S  SER*     2.9    21.1    +      -       -      +
     39S  PRO*     3.5    30.1    -      -       -      +
     41S  ALA*     1.3    77.7    -      -       -      +
     43S  GLN*     1.3    62.5    +      -       -      +
     45S  PHE*     3.3     0.9    +      -       -      +
     46S  GLN*     2.9    35.6    +      -       -      +
     14T  TYR*     3.9     8.8    +      -       -      +
     17T  TRP*     4.2    11.9    -      -       +      -
     18T  GLN*     3.2    44.2    -      -       -      +
     21T  PHE*     5.8     1.1    -      -       +      -
     22T  ASN*     4.6     2.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with GLN 43 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12R  GLN*     5.3     7.6    -      -       +      +
     39S  PRO      3.1    11.2    +      -       -      +
     40S  VAL*     3.3    11.2    -      -       -      +
     42S  GLN*     1.3    79.4    -      -       -      +
     44S  ASN*     1.3    61.0    +      -       -      +
     46S  GLN*     3.7    10.4    +      -       -      +
     47S  THR*     2.6    59.5    +      -       -      +
     43v  GLN*     3.1    42.5    -      -       -      +
     11w  SER*     5.1    10.3    -      -       -      -
     12w  GLN*     6.1     2.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 44 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2317    A      3.6    22.4    -      -       -      +
    2327    T      2.9    19.6    +      -       -      -
      8R  ARG*     3.7    24.9    -      -       -      +
     12R  GLN*     2.9    34.8    +      -       -      +
     16R  LYS*     5.5     4.2    -      -       -      +
     40S  VAL*     3.1    21.0    +      -       -      +
     41S  ALA      3.1     7.5    +      -       -      +
     43S  GLN*     1.3    76.9    -      -       -      +
     45S  PHE*     1.3    66.9    +      -       -      +
     47S  THR*     3.4     4.9    +      -       -      -
     48S  ASN*     3.1    23.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 45 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2307    T      4.5    11.0    -      -       -      -
    2317    A      3.5    28.0    -      -       -      -
    1208    T      5.3     6.7    -      -       -      -
     41S  ALA      2.8    16.4    +      -       -      +
     42S  GLN      3.7     3.8    -      -       -      +
     44S  ASN*     1.3    77.7    -      -       -      +
     46S  GLN*     1.3    58.3    +      -       -      +
     49S  VAL*     2.9    68.3    +      -       +      +
     10T  TYR*     5.1     0.9    -      +       -      -
     13T  ARG*     4.4     5.6    -      -       +      -
     14T  TYR*     3.5    44.6    -      +       +      -
     17T  TRP*     3.5    56.8    -      +       +      -
----------------------------------------------------------
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Residues in contact with GLN 46 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42S  GLN*     2.9    28.5    +      -       -      +
     43S  GLN*     3.8    12.4    +      -       -      +
     45S  PHE*     1.3    79.3    -      -       -      +
     47S  THR*     1.3    63.2    +      -       -      +
     50S  PRO*     3.1    22.7    -      -       -      +
     10T  TYR*     5.2    10.1    +      -       +      +
     14T  TYR*     3.4    47.2    +      -       +      -
     11w  SER*     2.8    29.0    +      -       -      +
     14w  TYR*     6.2     2.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 47 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     12R  GLN*     4.9    12.4    +      -       -      +
     43S  GLN*     2.6    46.6    +      -       -      +
     44S  ASN*     3.7     7.2    -      -       -      -
     45S  PHE      3.2     0.4    -      -       -      -
     46S  GLN*     1.3    78.8    -      -       -      +
     48S  ASN*     1.3    71.9    +      -       -      +
     50S  PRO*     4.3     2.3    -      -       -      +
     51S  LYS*     3.4    23.8    -      -       -      +
      9w  SER*     5.5    11.5    -      -       -      +
     11w  SER*     4.1     7.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with ASN 48 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2307    T      3.8    18.4    +      -       -      +
    2317    A      3.0    21.4    +      -       -      -
      7R  SER*     4.5     8.5    +      -       -      -
      8R  ARG*     3.8    12.5    -      -       -      +
     12R  GLN*     5.5     3.6    -      -       -      +
     44S  ASN*     3.1    10.7    +      -       -      +
     47S  THR*     1.3    87.2    -      -       -      +
     49S  VAL*     1.3    67.3    +      -       -      +
     50S  PRO*     3.4     1.6    -      -       -      -
     51S  LYS*     2.9    49.7    +      -       +      +
     52S  PHE*     3.4    12.1    -      -       +      -
     88S  ASN*     4.9     5.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 49 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2307    T      3.6    33.2    -      -       +      +
     45S  PHE*     2.9    58.3    +      -       +      +
     48S  ASN*     1.3    73.8    -      -       -      +
     50S  PRO*     1.3    62.8    -      -       +      +
     52S  PHE*     2.9    27.1    +      -       +      +
     53S  THR*     3.0    12.5    +      -       -      +
     10T  TYR*     4.6     6.1    -      -       +      -
     13T  ARG*     3.8    29.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 50 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45S  PHE      3.8     0.9    -      -       -      +
     46S  GLN*     3.1    26.2    -      -       -      +
     47S  THR      4.2     2.9    -      -       -      +
     48S  ASN      3.4     2.9    -      -       -      -
     49S  VAL*     1.3    97.8    -      -       +      +
     51S  LYS*     1.3    60.6    +      -       +      +
     53S  THR*     3.7     1.6    -      -       -      +
     54S  SER*     3.2    24.8    +      -       -      -
     10T  TYR*     3.7    48.2    -      -       +      -
     10w  TYR*     4.9    13.2    -      -       +      -
     11w  SER*     4.8     2.0    -      -       -      +
     50x  PRO*     5.8     2.0    -      -       +      -
     54x  SER*     5.3     0.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 51 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     47S  THR*     3.4    23.8    +      -       -      +
     48S  ASN*     2.9    36.7    +      -       -      +
     49S  VAL      3.0     0.6    -      -       -      -
     50S  PRO*     1.3    77.9    -      -       +      +
     52S  PHE*     1.3    64.0    +      -       +      +
     54S  SER*     2.9    18.8    +      -       -      -
     55S  VAL*     3.3    13.2    -      -       -      +
     84S  ALA*     5.5     0.6    -      -       -      +
     88S  ASN*     3.9    26.6    +      -       -      +
      9w  SER*     6.0     4.9    -      -       -      -
     57x  GLU*     4.2    27.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 52 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    2297    A      3.7    17.3    -      -       +      -
    2307    T      3.4    40.4    -      -       -      +
     48S  ASN*     3.4    19.1    -      -       +      -
     49S  VAL*     2.9     7.8    +      -       -      +
     51S  LYS*     1.3    75.5    -      -       +      +
     53S  THR*     1.3    67.6    +      -       -      +
     54S  SER      3.2     1.6    -      -       -      -
     55S  VAL*     3.1     7.3    +      -       -      +
     56S  ASN*     2.9    27.7    +      -       -      +
     81S  LEU*     3.7    29.3    -      -       +      +
     84S  ALA*     3.6    26.2    -      -       +      -
     85S  ARG*     3.6    15.0    -      -       -      -
     88S  ASN*     3.3    32.5    -      -       -      -
     13T  ARG*     5.0     5.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with THR 53 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     49S  VAL*     3.0     7.7    +      -       -      +
     50S  PRO      3.8     5.6    -      -       -      -
     52S  PHE*     1.3    78.4    -      -       -      +
     54S  SER*     1.3    62.9    +      -       -      +
     56S  ASN*     3.1     9.4    +      -       +      +
     57S  GLU*     3.0    23.6    +      -       +      +
      8T  ARG      4.7     4.5    -      -       -      +
      9T  SER*     4.2     6.7    -      -       -      -
     10T  TYR*     3.1    46.6    -      -       +      +
     13T  ARG*     2.7    29.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with SER 54 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     50S  PRO      3.2     9.9    +      -       -      -
     51S  LYS*     2.9    22.3    +      -       -      -
     53S  THR*     1.3    80.1    -      -       -      +
     55S  VAL*     1.3    59.0    +      -       -      +
     57S  GLU*     3.4     6.8    +      -       -      +
     58S  ASN*     3.0    39.1    +      -       -      -
     54x  SER*     3.3    36.5    -      -       -      -
     57x  GLU*     5.7     0.7    +      -       -      -
     58x  ASN*     5.5     4.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 55 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     51S  LYS      3.3    18.2    -      -       -      +
     52S  PHE*     3.1    10.7    +      -       -      +
     53S  THR      3.1     0.6    -      -       -      -
     54S  SER*     1.3    77.3    +      -       -      +
     56S  ASN*     1.3    61.4    +      -       -      +
     58S  ASN*     4.9     2.7    -      -       -      +
     59S  VAL*     2.8    53.2    +      -       +      +
     77S  GLN*     5.2     0.4    -      -       -      +
     80S  GLY*     4.1    13.2    -      -       -      -
     81S  LEU*     4.3    10.1    -      -       +      +
     84S  ALA*     4.0    20.6    -      -       +      -
    125S  ILE*     3.9    26.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 56 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    1218    A      4.8     3.6    +      -       -      +
    1228    T      4.1    36.6    +      -       -      +
     52S  PHE*     2.9    17.4    +      -       -      +
     53S  THR*     3.1     8.6    +      -       +      +
     55S  VAL*     1.3    75.1    -      -       -      +
     57S  GLU*     1.3    58.2    +      -       -      +
     60S  SER*     2.9    31.2    +      -       -      -
     77S  GLN*     3.1    20.8    +      -       -      +
     81S  LEU*     3.3    30.1    -      -       -      +
     13T  ARG*     4.0    22.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 57 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     53S  THR*     3.0    14.6    +      -       +      +
     54S  SER*     3.5    11.4    -      -       -      +
     55S  VAL      3.1     0.2    -      -       -      -
     56S  ASN*     1.3    75.2    -      -       -      +
     58S  ASN*     1.3    75.6    +      -       -      +
     60S  SER*     3.2     7.7    +      -       -      -
     61S  ALA*     3.0    22.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 58 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     54S  SER*     3.0    24.4    +      -       -      +
     55S  VAL*     4.1     2.7    -      -       -      +
     57S  GLU*     1.3    88.9    -      -       -      +
     59S  VAL*     1.3    62.2    +      -       +      +
     61S  ALA*     3.2     9.4    +      -       -      +
     62S  VAL*     3.2    25.6    +      -       -      +
    124S  ILE*     3.7    24.2    -      -       +      +
     54x  SER*     5.3     4.9    +      -       -      -
     58x  ASN*     4.2    19.8    -      -       -      +
    124x  ILE*     4.7     9.4    +      -       -      +
    125x  ILE*     4.8     8.9    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 59 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     55S  VAL*     2.8    37.0    +      -       +      +
     58S  ASN*     1.3    74.0    -      -       +      +
     60S  SER*     1.3    65.9    +      -       -      +
     62S  VAL*     3.1     9.1    +      -       -      +
     63S  LEU*     2.9    33.9    +      -       +      +
     76S  TYR      4.3     1.1    -      -       -      +
     77S  GLN*     3.3    33.4    -      -       -      +
     80S  GLY*     4.7     2.2    -      -       -      -
    121S  VAL*     4.0    38.8    -      -       +      +
    124S  ILE*     5.5     2.7    -      -       +      -
    125S  ILE*     4.4     7.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 60 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    1228    T      4.9     0.4    -      -       -      -
    1238    A      3.4    10.3    +      -       -      -
     56S  ASN      2.9    21.7    +      -       -      -
     57S  GLU*     3.4     9.9    -      -       -      -
     59S  VAL*     1.3    77.5    -      -       -      +
     61S  ALA*     1.3    63.1    +      -       -      +
     63S  LEU*     3.1     2.8    +      -       -      -
     64S  THR*     3.0    12.9    +      -       -      -
     73S  ARG*     2.7    41.7    +      -       -      +
     77S  GLN*     3.4    12.0    -      -       -      +
     89U  ARG      4.7     2.9    +      -       -      -
     90U  ILE      4.7     3.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 61 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     57S  GLU*     3.0    15.8    +      -       +      +
     58S  ASN*     3.4    13.5    -      -       -      +
     59S  VAL      3.2     0.2    -      -       -      -
     60S  SER*     1.3    76.4    -      -       -      +
     62S  VAL*     1.3    63.2    +      -       +      +
     64S  THR*     3.2     7.3    +      -       -      -
     65S  GLN*     3.1    31.4    +      -       -      +
    125x  ILE      6.1     0.9    -      -       -      +
    126x  THR      5.7     3.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 62 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     58S  ASN      3.4    12.6    -      -       -      +
     59S  VAL*     3.1    12.2    +      -       -      +
     61S  ALA*     1.3    78.0    -      -       +      +
     63S  LEU*     1.3    70.1    +      -       +      +
     65S  GLN*     2.9    23.2    +      -       -      +
     66S  TYR*     3.0    39.0    +      -       +      -
    117S  VAL*     5.3     0.9    -      -       +      +
    120S  ALA*     4.0    17.9    -      -       +      +
    121S  VAL*     4.8     6.1    -      -       +      +
    124S  ILE*     3.6    33.2    -      -       +      -
    126x  THR      5.4     5.6    -      -       -      +
    127x  GLY*     5.7     0.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 63 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     59S  VAL*     2.9    35.2    +      -       +      +
     60S  SER*     3.1     7.2    +      -       -      +
     62S  VAL*     1.3    77.9    -      -       +      +
     64S  THR*     1.3    61.3    +      -       -      +
     66S  TYR*     3.2     3.3    +      -       -      +
     67S  GLY      3.0     4.2    +      -       -      -
     68S  ILE*     2.9    42.2    +      -       +      +
     73S  ARG*     3.5    49.1    -      -       +      +
     76S  TYR*     3.6    34.1    -      -       +      -
     77S  GLN*     4.0    10.1    -      -       +      +
    117S  VAL*     4.1    11.0    -      -       +      -
    121S  VAL*     5.1     1.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 64 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     60S  SER      3.0     6.3    +      -       -      -
     61S  ALA*     3.6    10.0    -      -       -      -
     63S  LEU*     1.3    76.6    -      -       -      +
     65S  GLN*     1.3    61.4    +      -       +      +
     67S  GLY      3.1     9.5    +      -       -      -
     73S  ARG*     3.0    22.1    +      -       -      +
     90U  ILE*     2.6    32.9    +      -       +      +
     91U  GLY*     3.8     8.1    -      -       -      +
     92U  SER      3.3    27.8    -      -       -      +
     93U  GLY*     4.6     1.6    -      -       -      -
     94U  PRO*     3.3     4.6    -      -       +      +
     95U  ALA*     3.3    18.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 65 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     61S  ALA*     3.1    18.9    +      -       -      +
     62S  VAL*     2.9    16.6    +      -       -      +
     64S  THR*     1.3    78.2    -      -       +      +
     66S  TYR*     1.3    66.1    +      -       +      +
     67S  GLY      3.3     0.2    -      -       -      -
     94U  PRO*     3.4    24.3    -      -       +      +
     92x  SER*     5.8     5.5    -      -       -      -
    126x  THR*     3.9    21.3    +      -       -      +
    127x  GLY*     5.8     1.0    -      -       -      -
    128x  SER*     4.9     5.7    +      -       -      -
    134x  SER*     3.7    30.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 66 (chain S). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     62S  VAL*     3.0    36.5    +      -       +      +
     63S  LEU*     3.2     6.9    +      -       -      +
     65S  GLN*     1.3    84.8    -      -       +      +
     67S  GLY*     1.3    62.7    +      -       -      +
     68S  ILE*     3.4    21.9    +      -       +      +
    116S  GLN*     2.9    42.7    +      -       -      -
    117S  VAL*     4.1    15.9    -      -       +      -
    120S  ALA*     3.5    28.1    -      -       +      +
     94U  PRO*     4.6     0.4    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il