Contacts of the helix formed by residues 260 - 307 (chain E) in PDB entry 3JCK
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 260 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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411B LEU* 4.4 0.6 - - - +
238E ASN* 4.8 6.6 - - - +
239E LEU* 5.3 4.1 - - - -
259E ASN* 1.3 75.7 - - - +
261E LEU* 1.3 83.7 + - - +
262E GLN* 2.8 27.1 + - - +
263E LYS* 3.7 23.6 + - + +
264E ALA* 3.1 20.7 + - - +
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Residues in contact with LEU 261 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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411B LEU* 4.1 29.8 - - + +
412B LEU* 4.3 14.6 - - + -
415B TRP* 3.7 37.9 - - + +
237E PRO* 4.3 11.7 - - + -
238E ASN 4.3 13.9 - - - +
239E LEU* 4.8 9.6 - - + -
259E ASN 3.8 2.8 + - - -
260E ASN* 1.3 79.6 + - - +
262E GLN* 1.3 63.6 + - - +
264E ALA* 3.1 14.1 + - + +
265E LEU* 2.9 24.2 + - + +
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Residues in contact with GLN 262 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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455A GLU* 5.6 2.4 + - - -
239E LEU* 3.2 44.7 - - + +
260E ASN* 2.8 23.5 + - - +
261E LEU* 1.3 75.7 - - - +
263E LYS* 1.3 60.2 + - - +
265E LEU* 2.9 32.6 + - - +
266E THR* 2.9 21.4 + - - +
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Residues in contact with LYS 263 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
453A ASP* 4.5 30.5 - - + +
259E ASN* 5.0 12.4 + - - +
260E ASN* 3.7 25.8 + - + +
262E GLN* 1.3 77.5 - - + +
264E ALA* 1.3 68.2 + - - +
266E THR* 3.9 9.4 - - - -
267E VAL* 2.9 31.0 + - + +
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Residues in contact with ALA 264 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408B SER* 3.9 21.8 - - - +
411B LEU* 3.5 30.1 - - + -
412B LEU* 4.4 3.2 - - + +
260E ASN 3.1 15.9 + - - +
261E LEU* 3.1 21.9 + - + +
263E LYS* 1.3 79.9 - - - +
265E LEU* 1.3 56.5 + - - +
267E VAL* 4.1 1.4 + - - +
268E LYS* 3.4 22.0 + - - +
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Residues in contact with LEU 265 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412B LEU* 4.5 17.3 - - + -
415B TRP* 5.1 12.6 - - + -
239E LEU* 4.8 10.3 - - + -
261E LEU* 2.9 12.2 + - + +
262E GLN* 2.9 21.6 + - - +
264E ALA* 1.3 76.5 - - - +
266E THR* 1.3 67.9 + - - +
267E VAL 3.2 0.2 - - - -
268E LYS* 3.0 12.9 + - + +
269E THR* 3.0 34.1 + - - +
230G TYR* 5.9 0.9 - - - +
298G ALA* 4.3 21.1 - - + +
302G SER* 4.3 23.3 - - - -
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Residues in contact with THR 266 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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453A ASP 3.1 28.7 - - - +
454A SER* 3.6 21.5 - - - +
455A GLU* 4.4 17.0 + - + +
458A GLN* 4.8 5.5 + - - +
262E GLN* 2.9 23.3 + - - +
263E LYS* 3.2 10.7 + - - -
265E LEU* 1.3 77.8 - - - +
267E VAL* 1.3 62.7 + - - +
269E THR* 3.2 7.2 + - - +
270E ASN* 3.0 27.8 + - - +
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Residues in contact with VAL 267 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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452A TYR* 3.8 19.0 + - + -
453A ASP* 4.4 25.8 - - + +
408B SER* 4.8 12.8 - - - +
396D LYS* 4.4 15.5 - - + -
263E LYS* 2.9 22.8 + - + +
264E ALA* 4.3 5.6 - - - +
266E THR* 1.3 75.2 - - - +
268E LYS* 1.3 68.5 + - + +
270E ASN* 3.6 10.0 - - - +
271E ASP* 2.9 17.4 + - + +
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Residues in contact with LYS 268 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408B SER* 4.1 16.1 + - - +
409B SER* 4.3 9.8 - - - +
412B LEU* 3.3 36.1 - - + -
264E ALA 3.4 13.5 - - - +
265E LEU* 3.0 12.4 + - + +
267E VAL* 1.3 77.3 - - + +
269E THR* 1.3 54.7 + - - +
271E ASP* 2.2 41.2 + - + +
272E GLU* 2.6 33.3 + - - +
230G TYR* 4.3 7.9 - - + -
234G GLU* 2.3 43.9 + - - +
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Residues in contact with THR 269 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458A GLN* 3.2 28.9 - - - +
265E LEU* 3.0 26.9 + - - +
266E THR* 3.8 5.2 - - - -
268E LYS* 1.3 73.3 - - - +
270E ASN* 1.3 62.7 + - - +
272E GLU* 3.4 8.6 + - - +
273E LEU* 2.9 27.7 + - + +
295G VAL* 4.6 13.7 + - + +
298G ALA* 5.5 3.5 - - - +
259H ILE* 4.2 24.9 - - + -
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Residues in contact with ASN 270 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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452A TYR* 2.9 53.1 + - + +
454A SER 3.2 7.4 + - - +
457A PRO* 3.2 22.2 - - + +
458A GLN* 3.1 28.2 + - - +
461A PHE* 4.5 4.8 - - + -
409C TYR* 4.4 1.8 + - - +
266E THR* 3.0 22.9 + - - +
267E VAL* 3.6 4.9 - - - +
269E THR* 1.3 74.8 - - - +
271E ASP* 1.3 64.2 + - - +
273E LEU* 3.1 8.4 + - - +
274E MET* 3.0 22.0 + - - +
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Residues in contact with ASP 271 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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452A TYR* 4.1 6.7 - - - +
406C ASP* 4.4 7.6 - - - +
408C THR* 4.2 11.2 + - - +
409C TYR* 4.2 8.9 - - - -
396D LYS* 4.5 12.9 + - - +
267E VAL* 2.9 14.8 + - + +
268E LYS* 2.2 35.3 + - + +
270E ASN* 1.3 70.5 - - - +
272E GLU* 1.3 64.0 + - - +
274E MET* 3.3 27.2 - - - +
275E VAL* 3.6 8.0 + - - +
234G GLU* 3.8 18.5 - - - +
237G ASN* 6.1 1.8 - - - -
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Residues in contact with GLU 272 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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268E LYS* 2.6 62.3 + - - +
269E THR* 3.4 4.3 + - - +
271E ASP* 1.3 74.0 - - - +
273E LEU* 1.3 57.0 + - - +
274E MET 3.0 1.8 - - - -
275E VAL* 2.6 30.1 + - - +
276E ILE* 2.9 13.3 + - - +
230G TYR* 4.7 4.5 - - - -
233G LYS* 4.6 5.7 - - - +
234G GLU* 4.4 4.7 - - - +
237G ASN* 4.2 10.0 + - - +
291G ASN* 3.5 24.2 - - + +
294G SER* 4.1 20.2 + - - +
295G VAL* 3.8 24.0 - - + -
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Residues in contact with LEU 273 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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458A GLN* 3.6 50.0 - - + +
461A PHE* 4.3 15.3 - - + -
465A ILE* 4.4 8.3 - - + +
269E THR* 2.9 30.5 + - + +
270E ASN* 3.6 5.4 - - - +
272E GLU* 1.3 75.2 - - - +
274E MET* 1.3 62.3 + - - +
276E ILE* 3.6 22.5 - - + +
277E TYR* 2.9 25.0 + - - +
295G VAL* 5.0 6.1 - - + -
259H ILE* 4.4 15.5 - - + -
262H LYS* 5.8 1.1 - - + -
266H TYR* 4.3 21.5 - - + +
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Residues in contact with MET 274 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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461A PHE* 4.0 18.7 - - + -
408C THR* 3.4 32.5 - - + -
409C TYR* 3.5 39.9 - - + +
412C ALA* 4.0 15.3 - - + -
403D LEU* 3.9 23.3 - - + -
270E ASN 3.0 10.8 + - - +
271E ASP* 3.3 14.1 - - - +
272E GLU 2.8 1.0 + - - -
273E LEU* 1.3 76.9 - - - +
275E VAL* 1.3 74.3 + - + +
277E TYR* 2.6 24.6 + - - +
278E ILE* 2.9 21.7 + - + -
241G THR* 5.5 0.9 - - + -
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Residues in contact with VAL 275 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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408C THR* 4.8 2.2 - - + -
271E ASP* 3.9 8.7 - - - +
272E GLU 2.6 11.4 + - - +
274E MET* 1.3 92.1 - - + +
276E ILE* 1.3 60.1 + - - +
278E ILE* 3.6 8.4 - - + +
279E SER* 2.5 42.7 + - - +
237G ASN* 4.2 30.7 - - + +
241G THR* 4.6 12.8 - - + -
244G MET* 6.4 0.4 - - - -
287G THR* 3.9 12.8 - - + -
291G ASN* 3.7 25.8 - - - +
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Residues in contact with ILE 276 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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465A ILE* 3.9 14.1 - - + -
272E GLU 2.9 7.0 + - - +
273E LEU* 3.6 24.9 - - + +
275E VAL* 1.3 78.0 - - - +
277E TYR* 1.3 58.4 + - - +
279E SER* 3.4 5.4 - - - -
280E ASN* 2.9 44.2 + - - +
288G LEU* 4.1 8.2 - - + +
291G ASN* 3.7 37.9 - - + +
292G ILE* 4.1 22.9 - - + -
295G VAL* 4.0 16.6 - - + -
266H TYR* 4.8 14.8 - - + -
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Residues in contact with TYR 277 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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461A PHE* 3.6 30.7 - + + -
464A ARG* 3.4 36.9 - - + +
465A ILE* 3.8 26.7 - - + -
468A ALA* 5.5 0.7 - - + -
403D LEU* 5.1 10.1 - - + -
404D VAL* 4.9 4.9 + - + -
407D GLY* 3.5 32.1 - - - -
408D ASP* 4.2 7.1 + - - -
411D LEU* 4.4 3.4 - - + +
273E LEU 2.9 12.8 + - - +
274E MET 2.6 12.5 + - - +
276E ILE* 1.3 68.8 - - - +
278E ILE* 1.3 88.9 + - + +
280E ASN* 2.9 17.0 + - + +
281E LEU* 2.9 36.2 + - + +
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Residues in contact with ILE 278 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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412C ALA* 3.9 28.5 - - + +
415C LEU* 4.3 20.8 - - + +
416C VAL* 5.0 6.1 - - + -
419C LEU* 5.3 1.4 - - + +
403D LEU* 4.4 13.9 - - + -
274E MET* 2.9 24.3 + - + +
275E VAL* 3.6 17.5 - - + +
277E TYR* 1.3 92.8 - - + +
279E SER* 1.3 66.7 + - - +
281E LEU* 3.1 20.1 + - + +
282E VAL* 3.0 24.4 + - - +
241G THR* 4.5 16.8 - - + -
244G MET* 5.9 2.0 - - - -
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Residues in contact with SER 279 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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275E VAL* 2.5 27.9 + - - +
276E ILE* 3.4 4.7 - - - -
278E ILE* 1.3 78.9 - - - +
280E ASN* 1.3 53.9 + - - +
282E VAL* 2.7 32.0 + - - +
283E ARG* 3.0 13.3 + - - +
244G MET* 4.8 7.3 - - - -
284G ALA* 4.1 7.4 - - - +
287G THR* 3.2 28.2 + - - +
288G LEU* 3.8 19.3 - - - -
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Residues in contact with ASN 280 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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465A ILE* 3.1 36.5 - - - +
468A ALA* 4.1 17.5 - - + -
469A ASN* 4.8 9.1 + - - +
276E ILE* 2.9 27.8 + - - +
277E TYR* 2.9 9.2 + - - +
279E SER* 1.3 72.4 - - - +
281E LEU* 1.3 64.7 + - - +
283E ARG* 3.1 18.3 + - - +
284E SER* 2.9 25.9 + - - -
288G LEU* 3.2 21.4 - - - +
266H TYR* 5.6 1.2 - - - +
270H ILE* 5.5 3.3 - - - +
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Residues in contact with LEU 281 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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468A ALA* 4.6 7.0 - - + -
416C VAL* 4.7 13.2 - - + -
419C LEU* 4.7 10.8 - - + -
407D GLY* 4.8 5.2 - - - -
410D LEU* 4.5 22.2 - - + +
411D LEU* 3.6 33.0 - - + -
414D LEU* 5.5 1.8 - - + +
277E TYR* 2.9 48.9 + - + +
278E ILE* 3.1 20.8 + - + +
280E ASN* 1.3 74.7 - - - +
282E VAL* 1.3 64.1 + - - +
284E SER* 3.2 7.8 + - - +
285E ILE* 2.9 26.4 + - - +
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Residues in contact with VAL 282 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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415C LEU* 4.3 13.0 - - + -
419C LEU* 4.4 13.5 - - + -
278E ILE 3.0 15.0 + - - +
279E SER* 2.7 16.2 + - - +
281E LEU* 1.3 72.0 - - - +
283E ARG* 1.3 62.6 + - - +
285E ILE* 3.0 22.6 - - + +
286E ILE* 3.0 27.2 + - + +
244G MET* 3.5 28.7 - - + -
280G LEU* 3.8 28.7 - - + -
284G ALA* 4.2 8.7 - - + -
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Residues in contact with ARG 283 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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469A ASN* 4.2 15.6 + - - -
472A HIS* 2.9 50.7 + - + +
279E SER 3.0 11.9 + - - +
280E ASN* 3.6 15.8 + - - +
282E VAL* 1.3 75.3 - - - +
284E SER* 1.3 66.3 + - - +
286E ILE* 2.9 12.3 + - + +
287E ALA* 2.9 23.0 + - - +
281G SER* 5.8 1.8 - - - +
284G ALA* 4.5 10.5 - - + -
285G ASP* 4.7 5.8 + - - +
288G LEU* 3.4 37.2 - - + +
269H SER 5.6 1.4 + - - -
270H ILE* 5.1 25.9 + - - +
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Residues in contact with SER 284 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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468A ALA* 3.0 32.7 + - - +
471A LEU* 4.6 8.5 - - - -
472A HIS* 4.2 10.4 + - - +
475A TYR* 4.0 4.2 - - - -
411D LEU* 6.2 0.4 - - - -
414D LEU* 4.2 18.8 - - - -
280E ASN 2.9 16.0 + - - -
281E LEU* 3.5 11.2 - - - -
283E ARG* 1.3 77.3 + - - +
285E ILE* 1.3 64.3 + - - +
287E ALA* 3.2 7.3 + - - +
288E PHE* 3.0 21.8 + - - +
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Residues in contact with ILE 285 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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419C LEU* 4.0 27.8 - - + -
422C VAL* 4.0 23.8 - - + -
423C VAL* 3.5 29.8 - - + +
426C LEU* 3.8 14.7 - - + +
410D LEU* 6.2 2.2 - - + -
414D LEU* 4.4 10.5 - - + +
281E LEU 2.9 14.4 + - - +
282E VAL* 3.0 26.5 - - + +
284E SER* 1.3 75.5 - - - +
286E ILE* 1.3 66.3 + - + +
288E PHE* 3.3 8.4 + - - +
289E ASP* 3.0 19.8 + - - +
251G TYR* 5.1 5.2 - - + -
280G LEU* 6.0 2.5 - - + -
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Residues in contact with ILE 286 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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282E VAL* 3.0 22.5 + - + +
283E ARG* 2.9 11.9 + - + +
285E ILE* 1.3 78.2 - - + +
287E ALA* 1.3 57.3 + - - +
289E ASP* 2.7 30.2 + - - +
290E ASP* 3.0 13.1 + - + +
251G TYR* 5.3 4.3 - - + +
277G LYS* 4.6 20.0 - - + +
280G LEU* 3.6 25.6 - - + -
281G SER* 3.4 45.5 - - - +
284G ALA* 5.5 0.9 - - + -
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Residues in contact with ALA 287 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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472A HIS* 3.2 37.2 - - + +
475A TYR* 4.0 12.3 - - + -
476A LEU* 3.9 13.0 - - + -
479A MET* 3.6 4.5 - - - +
283E ARG 2.9 9.2 + - - +
284E SER* 3.5 7.6 - - - +
286E ILE* 1.3 74.4 - - - +
288E PHE* 1.3 66.0 + - - +
290E ASP* 2.8 19.9 + - - +
291E LEU* 2.9 10.9 + - - +
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Residues in contact with PHE 288 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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475A TYR* 3.7 35.9 - + + -
423C VAL* 5.2 3.4 - - + -
426C LEU* 3.6 31.6 - - + -
427C PHE* 4.7 10.3 - + + -
414D LEU* 4.1 18.6 - - + -
417D TYR* 4.3 17.3 - - + -
418D GLY* 3.9 24.9 - - - -
421D VAL* 4.4 11.7 - - + -
284E SER 3.0 12.4 + - - +
285E ILE* 3.3 11.0 - - - +
287E ALA* 1.3 73.9 - - - +
289E ASP* 1.3 64.0 + - - +
291E LEU* 3.0 12.2 + - + +
292E ILE* 3.0 48.6 + - + +
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Residues in contact with ASP 289 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426C LEU* 3.3 20.9 - - + +
429C LYS* 4.2 14.2 + - - +
285E ILE 3.0 10.9 + - - +
286E ILE* 2.7 19.8 + - - +
288E PHE* 1.3 74.9 - - - +
290E ASP* 1.3 59.0 + - - +
292E ILE* 2.7 26.7 + - - +
293E GLU* 3.0 14.3 + - - +
251G TYR* 3.3 23.3 + - - +
255G ILE* 5.4 2.3 - - - +
277G LYS* 3.0 33.0 + - + +
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Residues in contact with ASP 290 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479A MET* 3.0 33.5 - - + +
286E ILE* 3.0 11.5 + - + +
287E ALA* 2.8 15.8 + - - +
289E ASP* 1.3 77.8 - - - +
291E LEU* 1.3 63.6 + - - +
293E GLU* 2.9 15.4 + - - +
294E ASN* 2.9 22.8 + - - +
277G LYS* 5.1 6.5 + - - +
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Residues in contact with LEU 291 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475A TYR* 3.3 65.3 - - + +
478A SER* 3.9 32.8 - - - +
479A MET* 3.2 10.7 - - + +
418D GLY 5.6 0.7 - - - +
421D VAL* 5.0 13.5 - - + -
422D ARG* 4.2 12.8 - - + +
287E ALA 2.9 6.9 + - - -
288E PHE* 3.2 15.0 - - + +
290E ASP* 1.3 76.8 - - - +
292E ILE* 1.3 63.4 + - - +
294E ASN* 3.2 2.3 + - + +
295E LYS* 2.9 38.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 292 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
426C LEU* 5.2 9.0 - - + +
427C PHE* 5.7 2.2 - - - -
429C LYS* 3.4 47.8 - - + +
430C ALA* 6.1 3.1 - - - +
421D VAL* 3.6 31.2 - - + -
288E PHE* 3.0 40.1 + - + +
289E ASP* 2.7 21.7 + - - +
291E LEU* 1.3 71.2 - - - +
293E GLU* 1.3 55.1 + - - +
295E LYS* 4.1 3.4 - - - +
296E ILE* 2.9 33.5 + - + +
----------------------------------------------------------
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Residues in contact with GLU 293 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429C LYS* 2.2 34.7 + - - -
289E ASP* 3.0 21.2 + - - +
290E ASP* 2.9 19.5 + - - +
292E ILE* 1.3 74.5 - - - +
294E ASN* 1.3 70.0 + - - +
296E ILE* 3.0 16.0 - - - +
297E GLN* 2.9 21.5 + - - +
300E LYS* 5.6 0.7 + - - -
258G GLU* 5.7 0.9 - - - +
277G LYS* 4.9 6.5 - - - +
----------------------------------------------------------
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Residues in contact with ASN 294 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478A SER 4.5 1.1 + - - +
479A MET* 2.6 64.8 + - - +
481A TYR* 4.6 3.5 - - + +
482A PRO* 3.7 22.2 - - - +
290E ASP* 2.9 12.5 + - - +
291E LEU* 3.7 6.3 - - + +
293E GLU* 1.3 75.2 - - - +
295E LYS* 1.3 59.5 + - + +
297E GLN* 2.4 32.0 + - - +
298E ASN* 2.8 23.9 + - - +
----------------------------------------------------------
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Residues in contact with LYS 295 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
478A SER* 4.2 12.7 + - - -
481A TYR* 3.2 37.5 + - + -
421D VAL* 3.8 37.7 - - + +
422D ARG* 3.9 14.0 + - - +
424D THR* 5.0 14.3 + - + -
291E LEU* 2.9 33.0 + - - +
292E ILE* 4.1 2.7 - - - +
294E ASN* 1.3 72.8 - - + +
296E ILE* 1.3 62.6 + - - +
298E ASN* 3.5 7.3 + - + +
299E LYS* 2.9 25.5 + - - +
----------------------------------------------------------
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Residues in contact with ILE 296 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
429C LYS* 5.1 10.8 - - - +
431C SER* 4.2 32.1 - - - +
292E ILE* 2.9 21.6 + - + +
293E GLU* 3.0 37.7 - - - +
295E LYS* 1.3 76.5 - - - +
297E GLN* 1.3 61.5 + - - +
299E LYS* 3.3 12.2 + - + +
300E LYS* 3.0 38.5 + - + +
----------------------------------------------------------
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Residues in contact with GLN 297 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293E GLU 2.9 15.1 + - - +
294E ASN* 2.4 23.5 + - - +
296E ILE* 1.3 73.1 - - - +
298E ASN* 1.3 58.7 + - - +
300E LYS* 2.8 45.0 + - - +
301E ILE* 2.9 62.2 + - + +
----------------------------------------------------------
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Residues in contact with ASN 298 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481A TYR* 3.1 50.3 - - - +
482A PRO* 5.1 3.8 - - - +
294E ASN* 2.8 24.2 + - - +
295E LYS* 4.1 7.4 - - + +
297E GLN* 1.3 78.5 - - - +
299E LYS* 1.3 62.6 + - - +
301E ILE* 4.4 10.2 - - - +
302E GLN* 2.9 40.8 + - + +
----------------------------------------------------------
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Residues in contact with LYS 299 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
431C SER* 3.1 42.9 + - - +
295E LYS 2.9 18.9 + - - +
296E ILE* 3.4 13.9 - - + +
297E GLN 3.1 0.2 - - - -
298E ASN* 1.3 77.0 - - - +
300E LYS* 1.3 58.8 + - - +
302E GLN* 4.3 1.7 - - - +
303E GLU* 2.9 31.0 + - + +
----------------------------------------------------------
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Residues in contact with LYS 300 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293E GLU* 5.6 0.4 + - - -
296E ILE* 3.0 23.9 + - + +
297E GLN* 2.8 64.2 + - - +
299E LYS* 1.3 75.4 - - - +
301E ILE* 1.3 65.8 + - + +
303E GLU* 2.9 29.1 - - - +
304E GLN* 2.9 7.1 + - - +
----------------------------------------------------------
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Residues in contact with ILE 301 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297E GLN* 2.9 51.9 + - + +
298E ASN* 4.0 10.5 - - - +
300E LYS* 1.3 76.8 - - + +
302E GLN* 1.3 68.4 + - - +
304E GLN* 2.6 29.1 + - + +
305E ARG* 2.9 13.3 + - + +
----------------------------------------------------------
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Residues in contact with GLN 302 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298E ASN* 2.9 33.9 + - + +
299E LYS* 4.3 1.6 - - - +
301E ILE* 1.3 82.2 - - - +
303E GLU* 1.3 63.5 + - - +
305E ARG* 2.8 59.2 + - - +
306E VAL* 3.7 8.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 303 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299E LYS* 2.9 24.5 + - + +
300E LYS* 2.9 15.9 - - - +
302E GLN* 1.3 75.6 - - - +
304E GLN* 1.3 93.3 + - - +
306E VAL* 3.1 26.5 + - - +
307E LYS 4.2 4.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 304 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300E LYS 2.9 5.3 + - - +
301E ILE* 2.6 18.0 + - + +
303E GLU* 1.3 95.6 + - - +
305E ARG* 1.3 61.6 + - - +
307E LYS* 2.9 52.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 305 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301E ILE* 2.9 12.1 + - + +
302E GLN* 2.8 45.8 + - - +
303E GLU 3.2 0.6 - - - -
304E GLN* 1.3 75.7 - - - +
306E VAL* 1.3 64.4 + - - +
307E LYS* 4.5 0.4 - - - -
----------------------------------------------------------
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Residues in contact with VAL 306 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302E GLN 3.7 8.0 + - - +
303E GLU* 3.1 18.8 + - - +
305E ARG* 1.3 82.6 - - - +
307E LYS* 1.3 70.4 + - + +
----------------------------------------------------------
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Residues in contact with LYS 307 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303E GLU* 4.8 5.4 - - - +
304E GLN* 2.9 44.0 + - - +
305E ARG 4.5 0.7 - - - -
306E VAL* 1.3 87.0 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il