Contacts of the helix formed by residues 1764 - 1819 (chain A) in PDB entry 3KBU
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU1764 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1688A ASN* 6.2 0.2 - - + -
1692A LEU* 4.2 25.0 - - + +
1762A HIS* 2.5 32.3 + - + -
1763A SER* 1.3 99.2 + - - +
1765A ALA* 1.3 56.5 + - - -
1766A ALA* 3.2 3.8 - - - -
1767A THR* 2.9 37.9 + - - +
1768A ILE* 2.9 12.4 + - - +
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Residues in contact with ALA1765 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1758A ILE* 4.1 30.6 - - + +
1762A HIS* 3.0 15.4 + - + +
1763A SER 3.5 1.2 + - - -
1764A GLU* 1.3 76.0 - - - +
1766A ALA* 1.3 53.8 + - - +
1768A ILE* 3.6 12.1 - - - +
1769A ALA* 2.8 36.4 + - - +
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Residues in contact with ALA1766 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1764A GLU 3.2 1.1 + - - -
1765A ALA* 1.3 77.9 - - - +
1767A THR* 1.3 64.1 + - - +
1769A ALA* 3.5 5.9 + - - +
1770A GLU* 3.1 23.3 + - - +
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Residues in contact with THR1767 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1692A LEU* 6.0 2.5 - - + -
1764A GLU* 2.9 27.0 + - - -
1766A ALA* 1.3 75.3 - - - +
1768A ILE* 1.3 69.0 + - - +
1770A GLU* 2.9 27.2 + - + +
1771A TRP* 2.9 42.0 + - + +
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Residues in contact with ILE1768 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1692A LEU* 3.8 18.4 - - + -
1695A LEU* 3.9 8.7 - - + -
1754A ILE* 3.2 43.2 - - + +
1757A LEU* 3.9 26.0 - - + -
1758A ILE* 4.5 4.5 - - + -
1762A HIS* 3.8 31.4 - - + +
1764A GLU 2.9 15.7 + - - +
1765A ALA* 3.6 9.9 - - - +
1767A THR* 1.3 76.7 - - - +
1769A ALA* 1.3 63.4 + - - +
1771A TRP* 3.0 14.6 + - + +
1772A LYS* 3.0 18.7 + - - +
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Residues in contact with ALA1769 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1758A ILE* 4.5 14.3 - - + +
1765A ALA 2.8 20.7 + - - +
1766A ALA* 3.8 6.1 - - - +
1768A ILE* 1.3 72.4 - - - +
1770A GLU* 1.3 63.5 + - - +
1772A LYS* 3.0 13.3 + - + +
1773A ASP* 2.9 31.7 + - - +
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Residues in contact with GLU1770 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1766A ALA 3.1 13.8 + - - +
1767A THR* 2.9 22.7 + - + +
1769A ALA* 1.3 74.1 - - - +
1771A TRP* 1.3 66.8 + - + +
1773A ASP* 3.0 13.7 + - - +
1774A GLY* 3.0 18.7 + - - -
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Residues in contact with TRP1771 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1692A LEU* 3.8 36.6 - - + -
1695A LEU* 3.9 28.7 - - + -
1696A LYS* 3.8 45.1 - - + -
1699A THR* 4.8 19.5 - - + +
1703A GLU* 4.2 5.1 - - - +
1754A ILE* 5.1 4.0 - - + -
1767A THR* 2.9 38.9 + - + +
1768A ILE* 3.2 13.0 - - + +
1770A GLU* 1.3 79.9 - - + +
1772A LYS* 1.3 58.9 + - - +
1774A GLY* 3.3 2.7 + - - +
1775A LEU* 2.9 30.1 + - - +
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Residues in contact with LYS1772 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1751A ASN* 2.7 37.2 - - - +
1754A ILE* 3.9 26.7 - - + +
1755A GLU* 2.6 35.6 + - - +
1758A ILE* 5.8 0.7 - - + -
1768A ILE 3.0 11.4 + - - +
1769A ALA* 3.0 15.2 + - + +
1771A TRP* 1.3 74.9 - - - +
1773A ASP* 1.3 58.3 + - - +
1775A LEU* 3.2 5.6 + - + +
1776A ASN* 2.8 46.4 + - - +
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Residues in contact with ASP1773 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1769A ALA* 2.9 24.5 + - - +
1770A GLU* 3.4 10.1 - - - +
1772A LYS* 1.3 81.6 - - - +
1774A GLY* 1.3 62.9 + - - +
1776A ASN* 3.3 5.8 + - - +
1777A GLU* 2.9 41.9 + - + +
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Residues in contact with GLY1774 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1703A GLU* 4.2 6.3 - - - -
1770A GLU 3.0 12.1 + - - -
1771A TRP* 3.7 3.4 - - - -
1773A ASP* 1.3 74.6 - - - +
1775A LEU* 1.3 63.4 + - - +
1777A GLU* 3.5 6.5 + - - +
1778A MET* 3.0 29.7 + - - +
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Residues in contact with LEU1775 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1699A THR* 5.1 6.3 - - + +
1702A LEU* 3.8 32.5 - - + -
1703A GLU* 3.8 27.8 + - + +
1706A ILE* 4.0 11.7 - - + -
1747A VAL* 4.6 17.0 - - + -
1750A VAL* 3.8 35.2 - - + -
1751A ASN* 4.8 7.6 - - - +
1754A ILE* 5.2 3.6 - - + -
1771A TRP 2.9 17.4 + - - +
1772A LYS* 3.5 4.7 - - - +
1774A GLY* 1.3 75.5 - - - +
1776A ASN* 1.3 64.5 + - - +
1778A MET* 3.1 7.2 + - - +
1779A TRP* 3.1 19.8 + - - +
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Residues in contact with ASN1776 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1747A VAL* 3.4 11.5 - - - +
1751A ASN* 2.9 43.4 + - - +
1772A LYS* 2.8 39.9 + - - +
1773A ASP* 4.0 4.8 + - - +
1775A LEU* 1.3 72.8 - - - +
1777A GLU* 1.3 57.9 + - + +
1779A TRP* 3.4 9.9 + - - +
1780A ALA* 3.0 28.6 + - - +
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Residues in contact with GLU1777 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1773A ASP* 2.9 36.8 + - - +
1774A GLY* 3.9 5.8 - - - +
1776A ASN* 1.3 69.8 - - + +
1778A MET* 1.3 61.5 + - + +
1780A ALA* 3.2 2.7 + - - -
1781A ASP* 2.8 36.6 + - - +
930D ARG* 3.2 44.5 + - - +
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Residues in contact with MET1778 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1703A GLU* 3.7 51.4 - - + +
1706A ILE* 3.7 30.7 - - + +
1707A SER* 3.9 12.1 - - - +
1710A GLU* 4.6 10.5 - - - +
1774A GLY 3.0 17.2 + - - +
1775A LEU 3.4 7.6 - - - +
1777A GLU* 1.3 75.2 - - + +
1779A TRP* 1.3 52.9 + - - +
1781A ASP* 3.3 9.8 + - - +
1782A LEU* 2.8 34.5 + - - +
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Residues in contact with TRP1779 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1705A TRP* 4.4 6.1 - + - -
1706A ILE* 4.1 15.1 - - + +
1739A THR* 3.9 10.3 - - + -
1740A GLY* 4.0 6.3 - - - -
1743A GLY* 3.6 24.2 - - - -
1744A GLN* 2.6 44.3 + - + -
1747A VAL* 3.7 33.4 - - + +
1775A LEU 3.1 11.5 + - - +
1776A ASN* 3.5 14.8 - - - +
1778A MET* 1.3 72.9 - - - +
1780A ALA* 1.3 68.7 + - + +
1782A LEU* 2.9 33.2 + - + +
1783A LEU* 2.8 56.7 + - + +
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Residues in contact with ALA1780 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1776A ASN 3.0 17.7 + - - +
1777A GLU* 3.7 4.0 - - - +
1779A TRP* 1.3 78.4 - - + +
1781A ASP* 1.3 62.6 + - - +
1783A LEU* 3.3 10.6 + - - +
1784A GLU* 3.2 21.3 + - - +
914D LEU* 4.0 20.7 - - + +
930D ARG* 4.4 4.9 - - - +
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Residues in contact with ASP1781 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1710A GLU* 5.0 4.7 - - - +
1777A GLU* 2.8 24.7 + - - +
1778A MET* 3.6 10.5 - - - +
1780A ALA* 1.3 70.6 - - - +
1782A LEU* 1.3 64.7 + - - +
1784A GLU* 3.2 5.5 + - - +
1785A LEU* 2.9 30.4 + - + +
914D LEU* 3.4 12.4 - - - +
915D VAL* 3.8 27.7 - - + +
930D ARG* 2.7 39.9 + - - -
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Residues in contact with LEU1782 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1705A TRP* 5.0 0.9 - - + -
1706A ILE* 4.0 21.3 - - + -
1709A LYS* 4.0 20.9 - - + -
1710A GLU* 3.7 37.2 + - + +
1713A ALA* 5.0 0.4 - - + -
1739A THR* 4.2 9.4 - - + -
1778A MET 2.8 15.4 + - - +
1779A TRP* 2.9 34.7 + - + +
1781A ASP* 1.3 77.4 - - - +
1783A LEU* 1.3 64.1 + - - +
1785A LEU* 3.1 11.5 + - + +
1786A ILE* 2.9 38.1 + - + +
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Residues in contact with LEU1783 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1740A GLY* 4.8 11.2 - - - -
1744A GLN* 4.7 2.9 - - - +
1779A TRP* 2.8 62.4 + - + +
1780A ALA* 3.7 10.8 - - - +
1781A ASP 3.3 0.2 - - - -
1782A LEU* 1.3 75.9 - - - +
1784A GLU* 1.3 57.8 + - - +
1786A ILE* 3.2 15.7 + - + +
1787A ASP* 2.9 28.0 + - - +
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Residues in contact with GLU1784 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1780A ALA 3.2 9.3 + - - +
1781A ASP* 3.2 9.7 + - - +
1783A LEU* 1.3 74.5 - - - +
1785A LEU* 1.3 56.8 + - - +
1787A ASP* 2.9 10.8 + - + +
1788A THR* 2.7 39.3 + - + -
912D GLY 4.8 1.4 - - - +
913D PHE* 3.8 5.5 - - - -
914D LEU* 3.3 27.6 + - + +
915D VAL* 3.0 12.0 + - - +
916D SER* 3.0 45.1 + - - +
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Residues in contact with LEU1785 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1710A GLU* 3.7 35.9 - - + +
1713A ALA* 3.9 9.5 - - + +
1781A ASP* 2.9 21.7 + - + +
1782A LEU* 3.5 9.6 - - + +
1784A GLU* 1.3 75.7 - - - +
1786A ILE* 1.3 62.3 + - - +
1788A THR* 3.2 3.3 + - - -
1789A ARG* 3.2 14.6 + - - +
915D VAL* 3.7 25.6 - - + -
916D SER* 4.0 4.7 - - - -
948D ARG* 3.1 37.4 + - - +
950D THR* 4.0 19.1 - - + -
952D ARG* 3.8 17.9 - - - +
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Residues in contact with ILE1786 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1713A ALA* 4.3 4.9 - - + -
1732A PHE* 3.4 18.5 - - + -
1735A PHE* 4.3 14.1 - - + -
1736A ALA* 3.5 35.0 - - + +
1739A THR* 3.8 33.7 - - + -
1740A GLY* 5.2 1.1 - - - +
1782A LEU* 2.9 36.6 + - + +
1783A LEU* 3.5 17.7 - - + +
1785A LEU* 1.3 72.9 - - - +
1787A ASP* 1.3 68.4 + - - +
1789A ARG 3.2 1.7 + - - -
1790A MET* 3.1 19.5 + - - +
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Residues in contact with ASP1787 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1783A LEU 2.9 14.2 + - - +
1784A GLU* 2.9 14.5 + - + +
1786A ILE* 1.3 79.3 - - - +
1788A THR* 1.3 65.2 + - - +
1790A MET* 3.0 28.6 + - - +
1791A GLN* 3.1 36.6 + - - +
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Residues in contact with THR1788 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1784A GLU* 2.7 24.0 + - + +
1785A LEU 3.2 5.0 + - - -
1787A ASP* 1.3 75.1 - - - +
1789A ARG* 1.3 56.9 + - - +
1791A GLN* 3.3 20.2 + - - +
1792A LEU* 2.8 29.3 + - - +
916D SER* 2.9 26.9 + - - +
917D PHE* 3.9 23.6 - - - +
918D MET* 3.9 4.3 - - - +
948D ARG* 2.6 35.6 + - - -
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Residues in contact with ARG1789 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1712A VAL 4.7 0.6 + - - -
1713A ALA 3.3 22.4 + - - +
1715A SER* 3.1 42.2 + - - -
1716A PRO 4.3 1.0 - - - -
1717A GLU* 3.0 32.7 + - - +
1718A MET* 4.5 0.6 - - - -
1728A LEU* 5.0 7.3 - - - +
1732A PHE* 3.3 42.5 - - + -
1785A LEU 3.2 13.9 + - - +
1786A ILE 3.6 1.8 - - - +
1787A ASP 3.2 0.6 - - - -
1788A THR* 1.3 77.7 + - - +
1790A MET* 1.3 58.1 + - - +
1792A LEU* 3.3 21.8 + - - +
1793A LEU* 2.9 57.5 + - + +
948D ARG* 3.7 8.7 - - - +
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Residues in contact with MET1790 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1729A ARG* 5.7 6.3 - - + +
1732A PHE* 3.9 14.3 - - + -
1733A ARG* 4.7 28.5 - - + +
1736A ALA* 4.3 23.8 - - - -
1786A ILE* 3.1 11.5 + - - +
1787A ASP* 3.0 20.5 + - - +
1789A ARG* 1.3 77.1 - - - +
1791A GLN* 1.3 53.1 + - + +
1793A LEU* 3.2 5.6 + - + +
1794A ALA* 2.8 36.2 + - + +
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Residues in contact with GLN1791 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1787A ASP* 3.1 34.8 + - - +
1788A THR* 3.6 12.4 - - - +
1790A MET* 1.3 74.4 - - + +
1792A LEU* 1.3 61.9 + - - +
1794A ALA* 3.3 7.3 + - - +
1795A ALA* 3.1 22.9 + - - +
918D MET* 3.4 39.5 + - + +
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Residues in contact with LEU1792 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1715A SER 5.1 3.1 - - - +
1716A PRO* 5.5 3.4 - - + +
1718A MET* 3.4 35.0 - - + -
1788A THR 2.8 18.0 + - - +
1789A ARG* 3.4 27.4 - - - +
1791A GLN* 1.3 72.5 - - - +
1793A LEU* 1.3 62.7 + - - +
1795A ALA* 3.2 4.9 + - + +
1796A SER* 3.1 19.2 + - - -
918D MET* 3.9 10.2 - - + -
946D PRO 4.2 15.9 - - - +
947D THR* 4.6 0.7 - - - -
948D ARG* 3.8 39.3 - - + +
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Residues in contact with LEU1793 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1717A GLU 3.7 8.5 - - - +
1718A MET* 4.8 7.6 - - - -
1725A VAL* 4.2 8.8 - - + +
1728A LEU* 4.0 25.6 - - + +
1729A ARG* 4.2 18.0 - - + +
1732A PHE* 3.7 33.9 - - + -
1789A ARG* 2.9 63.8 + - - +
1790A MET* 3.8 4.3 - - + +
1792A LEU* 1.3 73.0 - - - +
1794A ALA* 1.3 58.5 + - - +
1796A SER* 3.3 4.4 + - - -
1797A TYR* 2.8 29.0 + - - +
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Residues in contact with ALA1794 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1729A ARG* 5.0 8.0 - - + +
1790A MET* 2.8 16.9 + - + +
1791A GLN* 3.8 8.1 - - - +
1792A LEU 3.3 0.2 - - - -
1793A LEU* 1.3 77.5 - - - +
1795A ALA* 1.3 62.0 + - - +
1797A TYR* 3.2 9.2 - - + +
1798A ASP* 3.0 29.9 + - - +
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Residues in contact with ALA1795 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1718A MET* 6.0 0.9 - - + -
1791A GLN 3.1 13.1 + - - +
1792A LEU* 3.5 10.5 - - + +
1794A ALA* 1.3 70.7 - - - +
1796A SER* 1.3 67.1 + - - +
1798A ASP* 2.8 20.0 + - - +
1799A LEU* 3.1 12.1 + - - +
1866A TYR* 4.1 5.7 + - - +
918D MET* 4.8 0.7 - - + -
946D PRO* 3.6 37.7 - - + +
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Residues in contact with SER1796 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1718A MET* 2.7 54.9 + - - +
1725A VAL* 3.5 4.7 - - - +
1792A LEU 3.1 6.5 + - - -
1793A LEU* 3.6 10.5 - - - -
1795A ALA* 1.3 78.0 - - - +
1797A TYR* 1.3 63.4 + - - +
1799A LEU* 3.3 9.1 + - - +
1800A HIS* 3.0 35.9 + - - -
1866A TYR* 5.2 0.9 - - - -
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Residues in contact with TYR1797 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1722A PHE* 3.5 29.3 - + - -
1725A VAL* 3.7 25.3 - - + +
1726A THR* 3.6 21.2 + - - +
1729A ARG* 3.0 46.5 + - + +
1793A LEU 2.8 14.9 + - - +
1794A ALA* 3.2 14.1 - - + +
1795A ALA 3.0 0.2 - - - -
1796A SER* 1.3 77.6 - - - +
1798A ASP* 1.3 63.0 + - - +
1800A HIS* 3.4 1.9 + - - +
1801A ARG* 2.7 68.3 + - - +
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Residues in contact with ASP1798 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1794A ALA* 3.0 15.5 + - - +
1795A ALA* 2.8 14.5 + - - +
1797A TYR* 1.3 79.5 - - - +
1799A LEU* 1.3 58.5 + - - +
1801A ARG* 3.5 11.7 - - - +
1802A TYR* 2.8 36.4 + - - +
1858A VAL* 5.9 0.2 - - - +
1861A ARG* 3.2 30.5 + - - +
1862A LEU* 4.3 16.9 - - + +
----------------------------------------------------------
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Residues in contact with LEU1799 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1795A ALA 3.1 6.5 + - - +
1796A SER* 3.7 11.2 - - - +
1798A ASP* 1.3 75.8 - - - +
1800A HIS* 1.3 71.8 + - + +
1802A TYR* 3.3 3.9 + - - +
1803A PHE* 3.1 48.0 + - + -
1862A LEU* 4.6 8.2 - - + +
1866A TYR* 3.6 44.2 + - + +
1870A LYS* 4.1 27.8 - - + +
1874A ILE* 3.8 24.7 - - + -
----------------------------------------------------------
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Residues in contact with HIS1800 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1718A MET* 4.0 4.0 - - + -
1719A GLY 3.2 27.6 + - - -
1720A GLN 4.4 3.4 + - - -
1721A ASP* 4.2 8.4 + - - -
1722A PHE* 3.8 38.0 - - + +
1725A VAL* 4.1 9.7 - - + +
1796A SER* 3.0 37.6 + - - +
1797A TYR 3.9 1.3 - - - +
1799A LEU* 1.3 82.0 - - + +
1801A ARG* 1.3 58.6 + - - +
1802A TYR 3.2 0.2 + - - -
1803A PHE* 3.3 9.8 + + + +
1804A TYR* 2.8 31.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG1801 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1722A PHE* 3.6 25.8 - - + -
1797A TYR* 2.7 52.0 + - + +
1798A ASP* 3.5 13.0 - - - +
1800A HIS* 1.3 71.1 - - - +
1802A TYR* 1.3 57.7 + - - +
1804A TYR* 3.7 3.6 - - + +
1805A THR* 2.8 42.9 + - - +
----------------------------------------------------------
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Residues in contact with TYR1802 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1798A ASP 2.8 17.5 + - - +
1799A LEU 3.5 2.9 - - - +
1800A HIS 3.1 0.2 - - - -
1801A ARG* 1.3 74.8 - - - +
1803A PHE* 1.3 89.3 + + - +
1805A THR* 3.0 6.8 + - - -
1806A GLY* 2.9 20.8 + - - -
1855A PHE* 3.3 37.0 - + - -
1858A VAL* 3.6 22.9 - - + -
1859A ALA* 3.1 36.9 - - + +
1862A LEU* 3.6 18.8 - - + -
1874A ILE* 2.8 47.1 + - + -
1877A LYS* 4.4 3.4 - - + -
1878A GLU 3.6 10.0 + - - -
----------------------------------------------------------
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Residues in contact with PHE1803 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1799A LEU* 3.1 50.3 + - + +
1800A HIS* 4.1 9.6 - + + +
1802A TYR* 1.3 86.8 - + - +
1804A TYR* 1.3 61.8 + - - +
1806A GLY* 4.1 1.3 - - - +
1807A ALA* 3.3 23.4 + - - +
1870A LYS* 5.0 8.5 - - + -
1873A ALA* 3.8 44.6 - - + -
1874A ILE* 4.0 9.2 - - + -
1877A LYS* 4.1 31.2 - - + +
----------------------------------------------------------
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Residues in contact with TYR1804 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1722A PHE* 3.7 41.5 - + + -
1723A ASP* 6.0 1.3 - - - -
1800A HIS 2.8 19.3 + - - +
1801A ARG* 3.7 4.3 - - + +
1803A PHE* 1.3 80.0 - - - +
1805A THR* 1.3 71.2 + - - +
1807A ALA* 3.6 4.5 + - - +
1808A GLU* 3.2 52.3 + - + +
----------------------------------------------------------
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Residues in contact with THR1805 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1801A ARG* 2.8 34.3 + - - +
1802A TYR* 3.6 5.6 - - - -
1804A TYR* 1.3 82.4 - - - +
1806A GLY* 1.3 55.7 - - - +
1808A GLU* 3.1 7.4 + - + +
1809A ILE* 2.8 46.0 + - + +
1855A PHE* 3.7 20.9 - - + -
----------------------------------------------------------
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Residues in contact with GLY1806 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1802A TYR 2.9 12.7 + - - -
1803A PHE 4.1 1.3 - - - -
1805A THR* 1.3 74.1 - - - +
1807A ALA* 1.3 56.3 + - - +
1809A ILE* 3.1 4.7 + - - +
1810A LEU* 2.8 37.5 + - - +
1855A PHE* 3.3 28.1 - - - -
1877A LYS* 4.6 7.2 - - - -
1881A VAL* 4.0 6.1 - - - +
----------------------------------------------------------
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Residues in contact with ALA1807 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1803A PHE 3.3 18.3 + - - +
1804A TYR* 4.0 4.3 - - - +
1806A GLY* 1.3 74.0 - - - +
1808A GLU* 1.3 61.5 + - - +
1810A LEU* 3.3 12.6 + - - +
1811A GLY* 3.1 18.9 + - - -
1877A LYS* 4.3 12.0 - - - +
----------------------------------------------------------
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Residues in contact with GLU1808 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1804A TYR* 3.2 48.7 + - + +
1805A THR* 3.1 13.0 + - + +
1807A ALA* 1.3 75.7 - - - +
1809A ILE* 1.3 65.4 + - + +
1811A GLY* 3.1 4.7 + - - -
1812A LEU* 3.0 37.1 + - + +
----------------------------------------------------------
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Residues in contact with ILE1809 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1805A THR* 2.8 33.4 + - + +
1806A GLY* 3.5 7.6 - - - +
1808A GLU* 1.3 78.1 - - + +
1810A LEU* 1.3 55.6 + - - +
1812A LEU* 3.1 9.4 + - + +
1813A ILE* 2.9 51.9 + - + +
1848A LEU* 5.8 4.0 - - + -
1851A GLN* 4.0 31.9 - - + +
1852A VAL* 4.4 6.7 - - + -
1855A PHE* 3.9 25.8 - - + -
1881A VAL* 4.0 18.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU1810 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1806A GLY 2.8 21.5 + - - +
1807A ALA* 3.7 7.0 - - - +
1808A GLU 3.3 0.2 - - - -
1809A ILE* 1.3 73.3 - - - +
1811A GLY* 1.3 57.1 + - - +
1813A ILE* 3.9 5.6 - - + +
1814A ASP* 3.0 27.9 + - - +
1877A LYS* 3.7 23.6 - - + +
1880A GLU* 3.7 36.1 - - + +
1881A VAL* 3.8 31.9 - - + +
1884A ALA* 3.9 20.9 - - + -
----------------------------------------------------------
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Residues in contact with GLY1811 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1807A ALA 3.1 13.3 + - - -
1808A GLU* 3.1 4.7 + - - -
1810A LEU* 1.3 77.6 - - - +
1812A LEU* 1.3 58.6 + - - +
1814A ASP* 3.3 8.1 + - - +
1815A GLU* 2.9 28.8 + - - +
1818A ARG* 5.0 1.9 + - - -
----------------------------------------------------------
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Residues in contact with LEU1812 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1808A GLU* 3.0 30.3 + - + +
1809A ILE* 3.1 11.2 + - + +
1811A GLY* 1.3 73.5 - - - +
1813A ILE* 1.3 65.5 + - - +
1815A GLU* 3.4 19.8 + - - +
1816A LYS* 3.1 28.0 + - - +
1848A LEU* 3.7 28.9 - - + -
1851A GLN* 4.1 11.9 - - - +
----------------------------------------------------------
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Residues in contact with ILE1813 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1809A ILE* 2.9 40.8 + - + +
1810A LEU* 3.9 6.7 - - + +
1812A LEU* 1.3 73.5 - - - +
1814A ASP* 1.3 64.7 + - - +
1816A LYS* 3.3 4.7 + - - +
1817A HIS* 3.1 24.6 + - + +
1848A LEU* 3.8 24.5 - - + -
1852A VAL* 4.3 5.8 - - + -
1881A VAL* 4.0 20.2 - - + +
1884A ALA* 3.6 38.1 - - + +
1885A TRP* 4.1 17.7 - - + +
1888A LEU* 4.1 10.2 - - + +
----------------------------------------------------------
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Residues in contact with ASP1814 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1810A LEU 3.0 19.3 + - - +
1811A GLY* 3.4 8.7 - - - +
1812A LEU 3.3 0.2 - - - -
1813A ILE* 1.3 78.6 - - - +
1815A GLU* 1.3 57.0 + - - +
1817A HIS* 3.1 9.4 + - - +
1818A ARG* 2.9 63.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU1815 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1811A GLY 2.9 12.8 + - - +
1812A LEU* 3.6 25.8 - - - +
1813A ILE 3.4 0.2 - - - -
1814A ASP* 1.3 74.9 - - - +
1816A LYS* 1.3 63.6 + - + +
1818A ARG* 3.9 24.4 + - - +
1819A GLU* 3.2 35.7 + - - +
----------------------------------------------------------
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Residues in contact with LYS1816 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1812A LEU* 3.1 17.7 + - - +
1813A ILE 3.6 8.1 - - - +
1814A ASP 3.2 0.2 - - - -
1815A GLU* 1.3 80.7 - - - +
1817A HIS* 1.3 64.0 + - - +
1819A GLU* 2.8 48.2 + - - +
1841A PHE* 4.1 22.8 - - + -
1844A ASP* 3.6 39.2 + - + +
1845A VAL* 4.5 8.3 - - + -
1848A LEU* 4.1 16.8 - - + -
1888A LEU* 3.7 21.3 - - + +
----------------------------------------------------------
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Residues in contact with HIS1817 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1813A ILE* 3.1 13.5 + - + +
1814A ASP* 3.4 15.7 - - - +
1816A LYS* 1.3 72.4 - - - +
1818A ARG* 1.3 63.9 + - + +
1819A GLU 3.0 10.4 + - - -
1884A ALA 4.7 2.9 - - - -
1887A ALA* 3.5 29.6 + - + +
1888A LEU* 3.9 34.6 - - + +
----------------------------------------------------------
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Residues in contact with ARG1818 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1811A GLY 5.0 1.4 + - - -
1814A ASP* 2.9 42.1 + - - +
1815A GLU* 4.1 31.0 + - - +
1817A HIS* 1.3 76.0 - - + +
1819A GLU* 1.3 60.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU1819 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1815A GLU* 3.2 25.0 + - - +
1816A LYS* 2.8 52.9 + - - +
1817A HIS 3.0 6.5 - - - -
1818A ARG* 1.3 80.4 - - - +
1841A PHE* 4.2 20.4 - - + -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il