Contacts of the helix formed by residues 293 - 322 (chain D) in PDB entry 3KHU


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with LEU 293 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    239C  ALA*     4.0    11.4    -      -       +      +
    240C  LEU*     3.6    44.9    -      -       +      +
    243C  ALA*     3.9    16.8    -      -       +      -
    309C  TYR*     3.5    22.4    -      -       -      +
    288D  CYS*     2.9    16.6    +      -       +      +
    289D  GLU      4.4     0.2    +      -       -      -
    291D  LEU*     3.8    12.8    -      -       +      +
    292D  ASN*     1.3    84.2    -      -       -      +
    294D  PRO*     1.3    66.2    -      -       -      +
    295D  GLU*     3.2     5.2    -      -       -      -
    296D  VAL*     3.1    16.2    +      -       +      -
    297D  ALA*     3.0    19.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with PRO 294 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    289D  GLU*     5.4     5.6    -      -       +      -
    292D  ASN*     3.2    13.7    -      -       +      +
    293D  LEU*     1.3    90.2    -      -       -      +
    295D  GLU*     1.3    72.6    +      -       -      +
    297D  ALA*     3.5     8.7    -      -       +      +
    298D  ARG*     2.9    51.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 295 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    302C  GLN*     4.3     3.1    -      -       -      +
    306C  MET*     3.7     6.3    -      -       +      +
    309C  TYR*     3.4    57.8    +      -       +      -
    312C  ARG*     4.4     9.2    +      -       -      +
    292D  ASN      5.2     0.2    -      -       -      +
    293D  LEU*     4.3     0.7    -      -       -      -
    294D  PRO*     1.3    98.3    -      -       -      +
    296D  VAL*     1.3    62.4    +      -       -      +
    298D  ARG*     3.4    24.6    +      -       -      +
    299D  TYR*     3.1    22.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 296 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    236C  SER*     3.6    33.4    -      -       -      +
    239C  ALA*     4.1    15.3    -      -       +      -
    240C  LEU*     4.5     5.2    -      -       +      -
    306C  MET*     3.9    10.8    -      -       +      -
    309C  TYR*     4.1    14.4    -      -       +      -
    288D  CYS*     3.6    22.9    -      -       -      -
    293D  LEU*     3.1    22.3    +      -       +      +
    295D  GLU*     1.3    71.8    -      -       -      +
    297D  ALA*     1.3    66.7    +      -       -      +
    299D  TYR*     3.0     3.8    +      -       -      +
    300D  TRP*     3.0    38.6    +      -       +      +
----------------------------------------------------------
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Residues in contact with ALA 297 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    285D  VAL*     3.8    18.0    -      -       +      +
    288D  CYS*     3.7    20.0    -      -       +      +
    289D  GLU*     3.8    27.1    -      -       +      +
    293D  LEU      3.0    13.4    +      -       -      +
    294D  PRO*     3.5    10.3    -      -       +      +
    296D  VAL*     1.3    76.9    -      -       -      +
    298D  ARG*     1.3    62.7    +      -       +      +
    299D  TYR      3.2     0.2    +      -       -      -
    300D  TRP      3.4     0.3    +      -       -      -
    301D  GLN*     3.0    24.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 298 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    302C  GLN*     4.1    17.1    +      -       -      +
    294D  PRO*     2.9    39.1    +      -       +      +
    295D  GLU*     3.7    35.1    +      -       -      +
    297D  ALA*     1.3    74.5    -      -       +      +
    299D  TYR*     1.3    63.0    +      -       -      +
    301D  GLN*     3.4    15.0    +      -       -      +
    302D  GLN*     3.4    18.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 299 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    229C  GLN*     3.1    22.0    +      -       +      +
    232C  SER*     3.5     7.2    -      -       -      -
    233C  SER*     2.6    45.5    +      -       -      -
    236C  SER*     4.1     5.2    -      -       -      -
    302C  GLN*     3.4    49.7    +      -       +      +
    303C  VAL*     4.3     2.9    -      -       +      +
    306C  MET*     3.6    27.1    -      -       +      -
    229D  GLN*     3.7    13.9    +      -       -      +
    295D  GLU      3.1    13.5    +      -       -      +
    296D  VAL      3.0    10.0    +      -       -      +
    298D  ARG*     1.3    78.7    -      -       -      +
    300D  TRP*     1.3    82.9    +      +       -      +
    302D  GLN*     3.5    15.9    +      -       -      +
    303D  VAL*     4.4     2.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 300 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    233C  SER*     3.7    29.4    -      -       -      -
    236C  SER*     3.0    27.8    +      -       -      -
    237C  ILE*     4.2    13.1    -      -       +      +
    225D  ALA*     3.6    34.8    -      -       +      -
    226D  PHE*     3.9    24.9    -      +       -      -
    229D  GLN*     3.6    19.3    -      -       +      -
    281D  VAL*     3.8    13.4    -      -       +      +
    284D  LEU*     4.0    24.2    -      -       +      -
    285D  VAL*     4.0    17.9    -      -       +      +
    288D  CYS*     5.0     1.6    -      -       -      -
    296D  VAL*     3.0    36.6    +      -       +      +
    299D  TYR*     1.3    78.3    -      +       -      +
    301D  GLN*     1.3    63.8    +      -       -      +
    302D  GLN      3.0     2.5    -      -       -      -
    303D  VAL*     2.9    35.4    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 301 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    102D  ARG*     5.2     2.4    +      -       -      -
    282D  LEU*     3.8    14.9    -      -       -      +
    285D  VAL*     3.6    28.6    -      -       +      +
    297D  ALA      3.0    18.2    +      -       -      +
    298D  ARG*     3.6     9.6    -      -       -      +
    299D  TYR      3.4     0.2    -      -       -      -
    300D  TRP*     1.3    75.2    -      -       -      +
    302D  GLN*     1.3    62.8    +      -       +      +
    304D  ILE*     3.0    22.4    +      -       -      +
    305D  ASP*     2.9    52.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 302 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    295C  GLU      4.4     3.3    -      -       -      +
    298C  ARG*     4.1    18.3    +      -       -      +
    299C  TYR*     3.5    45.1    +      -       +      +
    302C  GLN*     3.7    30.1    -      -       +      +
    298D  ARG      3.4     9.0    +      -       -      +
    299D  TYR      3.5    10.1    -      -       -      +
    300D  TRP      3.0     0.8    -      -       -      -
    301D  GLN*     1.3    79.2    -      -       -      +
    303D  VAL*     1.3    63.3    +      -       +      +
    305D  ASP*     3.9    22.8    +      -       -      +
    306D  MET*     2.9    28.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 303 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    299C  TYR*     4.3     5.2    -      -       +      +
    225D  ALA      4.6     0.9    -      -       -      +
    228D  ALA*     3.7    39.9    -      -       +      +
    229D  GLN*     3.8    31.9    -      -       +      +
    232D  SER*     2.7    28.7    +      -       -      +
    272D  PHE*     4.1     6.7    -      -       +      -
    281D  VAL*     4.5     8.1    -      -       +      -
    299D  TYR      5.0     1.3    -      -       -      +
    300D  TRP*     2.9    32.6    +      -       +      +
    302D  GLN*     1.3    77.9    -      -       +      +
    304D  ILE*     1.3    64.3    +      -       +      +
    307D  ASN*     3.3    10.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 304 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    272D  PHE*     4.2    16.2    -      -       +      -
    278D  GLN*     4.0    37.5    -      -       +      +
    281D  VAL*     3.8    34.5    -      -       +      -
    282D  LEU*     4.1    21.5    -      -       +      -
    300D  TRP      4.8     0.2    -      -       -      +
    301D  GLN*     3.0    23.6    +      -       -      +
    303D  VAL*     1.3    74.1    -      -       -      +
    305D  ASP*     1.3    61.8    +      -       -      +
    306D  MET      3.1     1.8    -      -       -      -
    307D  ASN*     3.1     6.2    +      -       +      +
    308D  ASP*     2.8    46.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 305 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    301D  GLN*     2.9    51.2    +      -       -      +
    302D  GLN*     3.9    25.1    +      -       -      +
    304D  ILE*     1.3    76.3    -      -       -      +
    306D  MET*     1.3    56.8    +      -       -      +
    308D  ASP*     3.4    10.4    +      -       -      +
    309D  TYR*     2.9    29.5    +      -       -      +
    312D  ARG*     4.8     1.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 306 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    295C  GLU*     3.5    32.8    -      -       +      +
    296C  VAL*     4.0     4.0    -      -       +      +
    299C  TYR*     3.7    23.6    -      -       +      -
    232D  SER*     3.3    34.3    -      -       -      +
    235D  ASN*     4.7     4.7    -      -       +      +
    236D  SER*     3.7    26.5    -      -       -      +
    302D  GLN*     2.9    19.9    +      -       -      +
    305D  ASP*     1.3    76.7    -      -       -      +
    307D  ASN*     1.3    60.2    +      -       -      +
    309D  TYR*     3.4    21.5    +      -       +      -
    310D  GLN*     2.9    30.5    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 307 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    232D  SER*     3.8     2.7    +      -       -      +
    235D  ASN*     4.5     5.7    +      -       -      +
    271D  GLY*     3.2     9.0    -      -       -      -
    272D  PHE*     2.9    80.9    +      -       +      -
    278D  GLN*     5.1     4.0    +      -       -      -
    303D  VAL      3.3     5.4    +      -       -      +
    304D  ILE*     3.1     9.1    +      -       +      +
    306D  MET*     1.3    78.3    -      -       -      +
    308D  ASP*     1.3    63.3    +      -       -      +
    310D  GLN*     3.3     5.6    +      -       -      +
    311D  ARG*     3.2    44.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 308 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    278D  GLN*     4.3     6.8    -      -       -      +
    304D  ILE*     2.8    40.5    +      -       -      +
    305D  ASP*     3.7    10.8    -      -       -      +
    307D  ASN*     1.3    73.1    -      -       -      +
    309D  TYR*     1.3    57.3    +      -       -      +
    311D  ARG*     3.5    22.0    +      -       -      +
    312D  ARG*     3.0    41.7    +      -       -      +
    356D  TYR*     4.7     3.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 309 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    293C  LEU*     3.5    27.2    -      -       -      +
    295C  GLU*     3.5    46.3    +      -       +      -
    296C  VAL*     4.1    19.2    -      -       +      +
    236D  SER*     6.0     0.2    -      -       -      -
    239D  ALA*     4.0     5.5    -      -       +      +
    305D  ASP      2.9    17.7    +      -       -      +
    306D  MET*     3.7    24.2    -      -       -      +
    308D  ASP*     1.3    73.0    -      -       -      +
    310D  GLN*     1.3    68.2    +      -       -      +
    312D  ARG*     3.8    24.4    -      -       -      +
    313D  ARG*     2.8    63.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 310 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    235D  ASN*     3.2    33.4    +      -       +      +
    238D  SER*     3.0    20.0    +      -       -      -
    269D  SER      2.9    29.6    +      -       -      +
    270D  VAL*     3.2    12.1    -      -       -      +
    271D  GLY*     5.1     0.2    -      -       -      -
    306D  MET*     2.9    18.1    +      -       -      +
    307D  ASN*     3.3     7.8    +      -       -      +
    309D  TYR*     1.3    79.5    -      -       +      +
    311D  ARG*     1.3    62.0    +      -       -      +
    313D  ARG*     2.8    38.9    +      -       -      +
    314D  PHE*     3.1    23.9    +      -       -      +
    462D  ILE*     3.8    15.1    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 311 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    270D  VAL*     3.4    20.6    -      -       +      +
    271D  GLY*     4.5     0.8    -      -       -      -
    272D  PHE      3.0    19.8    +      -       -      -
    273D  GLY*     4.2     0.2    -      -       -      -
    278D  GLN*     4.4     9.1    +      -       -      -
    307D  ASN*     3.2    28.7    +      -       -      +
    308D  ASP*     3.7    19.2    +      -       -      +
    309D  TYR      3.2     0.6    -      -       -      -
    310D  GLN*     1.3    77.1    -      -       -      +
    312D  ARG*     1.3    57.7    +      -       -      +
    314D  PHE*     3.2     1.9    +      -       -      +
    315D  ALA*     2.9    25.8    +      -       -      +
    347D  GLU*     2.9    29.9    +      -       -      +
    349D  SER*     2.9    28.5    +      -       -      +
    352D  TYR*     3.4    40.9    -      -       +      -
    353D  ILE*     3.3    22.3    -      -       +      +
    356D  TYR*     4.5     8.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 312 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98B  MET*     4.4     9.1    -      -       +      +
    295C  GLU*     4.3     9.9    +      -       -      +
    305D  ASP      4.8     1.2    +      -       -      -
    308D  ASP*     3.0    26.2    +      -       -      +
    309D  TYR*     3.1    46.6    +      -       -      +
    311D  ARG*     1.3    77.6    -      -       -      +
    313D  ARG*     1.3    58.3    +      -       -      +
    315D  ALA*     3.3     3.6    +      -       -      +
    316D  SER*     2.9    36.9    +      -       -      +
    356D  TYR*     3.8    34.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 313 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    238D  SER*     3.1    15.4    +      -       -      -
    239D  ALA*     3.5    16.1    -      -       -      +
    242D  GLU*     2.6    43.2    +      -       -      -
    309D  TYR*     2.8    64.8    +      -       +      +
    310D  GLN*     2.8    35.3    +      -       -      +
    312D  ARG*     1.3    70.2    -      -       -      +
    314D  PHE*     1.3    69.3    +      -       -      +
    316D  SER*     3.6     8.3    -      -       -      -
    317D  ARG*     2.9    36.6    +      -       +      +
    462D  ILE*     4.7     3.4    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 314 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    270D  VAL*     3.6    26.9    -      -       +      -
    310D  GLN      3.1    16.2    +      -       -      +
    311D  ARG      3.4     7.9    -      -       -      +
    313D  ARG*     1.3    79.5    -      -       +      +
    315D  ALA*     1.3    62.9    +      -       -      +
    317D  ARG*     3.1    27.6    +      -       +      +
    318D  ILE*     3.2    23.1    +      -       +      +
    353D  ILE*     4.0    12.6    -      -       +      -
    412D  VAL*     3.7    21.8    -      -       +      -
    413D  ILE      4.4     2.5    -      -       -      -
    414D  CYS*     4.7     1.8    -      -       -      -
    439D  PHE*     3.9    32.3    -      +       +      -
    440D  ASP      4.2     2.7    -      -       -      -
    441D  GLY*     3.6    33.9    -      -       -      -
    460D  GLU      5.7     0.7    -      -       -      -
    461D  THR*     5.7     0.7    -      -       -      -
    462D  ILE*     3.9    23.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 315 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98B  MET*     4.5     4.0    -      -       +      -
    311D  ARG      2.9     8.8    +      -       -      +
    312D  ARG      3.6     7.4    -      -       -      +
    314D  PHE*     1.3    77.7    -      -       -      +
    316D  SER*     1.3    63.1    +      -       -      +
    318D  ILE*     3.2    15.2    +      -       -      +
    319D  ILE*     3.0    29.2    +      -       +      +
    353D  ILE*     4.3     9.9    -      -       +      +
    356D  TYR*     3.7    41.5    -      -       +      -
    357D  LEU*     5.3     2.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with SER 316 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98B  MET*     3.5    25.7    -      -       -      +
    312D  ARG*     2.9    23.4    +      -       -      +
    313D  ARG*     3.6     9.4    -      -       -      -
    314D  PHE      3.2     0.2    -      -       -      -
    315D  ALA*     1.3    74.1    -      -       -      +
    317D  ARG*     1.3    60.7    +      -       -      +
    319D  ILE*     4.4     4.0    -      -       -      +
    320D  ASP*     2.9    44.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 317 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    242D  GLU*     3.3    39.3    +      -       -      +
    313D  ARG*     2.9    26.9    +      -       +      +
    314D  PHE*     3.1    20.5    +      -       +      +
    316D  SER*     1.3    76.5    -      -       -      +
    318D  ILE*     1.3    64.5    +      -       -      +
    320D  ASP*     3.9     5.1    -      -       -      +
    321D  SER*     2.8    31.3    +      -       -      +
    439D  PHE*     4.5    11.3    -      -       +      -
    460D  GLU*     3.1    43.9    +      -       -      +
    461D  THR*     3.3    22.9    +      -       -      +
    462D  ILE*     4.0     4.8    -      -       -      +
    464D  LYS      4.2     6.1    +      -       -      -
    466D  VAL*     4.0    13.5    -      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 318 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    314D  PHE*     3.5    27.1    -      -       +      +
    315D  ALA*     3.2    13.2    +      -       -      +
    317D  ARG*     1.3    78.2    -      -       -      +
    319D  ILE*     1.3    63.1    -      -       -      +
    321D  SER*     3.1     2.1    +      -       -      -
    322D  LEU*     3.1    38.0    +      -       +      +
    331D  ILE*     4.7     3.6    -      -       +      -
    353D  ILE*     4.3     8.3    -      -       +      -
    357D  LEU*     4.2    20.0    -      -       +      -
    410D  ALA*     5.0     1.1    -      -       +      -
    412D  VAL*     3.8    37.2    -      -       +      -
    439D  PHE*     3.8    40.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 319 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98B  MET*     3.7    27.4    -      -       +      -
    315D  ALA*     3.0    19.5    +      -       +      +
    316D  SER*     4.0     3.8    -      -       -      +
    318D  ILE*     1.3    76.2    -      -       -      +
    320D  ASP*     1.3    61.1    +      -       -      +
    322D  LEU*     3.3    10.2    +      -       -      +
    324D  ASN*     2.8    53.6    +      -       -      +
    326D  VAL*     4.1    14.6    -      -       +      -
    356D  TYR      4.5     4.5    -      -       -      +
    357D  LEU*     3.8    22.2    -      -       +      -
    360D  GLU*     3.6    42.0    -      -       +      +
----------------------------------------------------------
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Residues in contact with ASP 320 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     98B  MET*     6.0     0.7    -      -       -      +
    142B  ARG*     5.8     1.9    +      -       -      -
    286B  TYR*     4.9     5.0    +      -       -      -
    316D  SER*     2.9    28.3    +      -       -      +
    317D  ARG*     3.9     4.6    -      -       -      +
    319D  ILE*     1.3    77.9    -      -       -      +
    321D  SER*     1.3    61.6    +      -       -      +
    323D  PHE*     3.0    17.0    +      -       -      -
    324D  ASN*     4.1    19.8    -      -       -      +
----------------------------------------------------------
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Residues in contact with SER 321 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    142B  ARG*     5.3     5.5    +      -       -      +
    317D  ARG*     2.8    19.7    +      -       -      -
    318D  ILE      3.1     4.7    +      -       -      -
    320D  ASP*     1.3    76.2    -      -       -      +
    322D  LEU*     1.3    59.3    +      -       -      +
    323D  PHE*     3.3    15.3    +      -       -      -
    437D  PHE*     3.5    28.9    -      -       -      -
    439D  PHE*     3.6    20.3    -      -       -      -
    460D  GLU*     3.8    19.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 322 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    318D  ILE*     3.1    25.3    +      -       +      +
    319D  ILE      3.9     4.5    -      -       -      +
    320D  ASP      3.2     0.6    -      -       -      -
    321D  SER*     1.3    76.1    -      -       -      +
    323D  PHE*     1.3    67.8    +      -       -      +
    324D  ASN      3.3     2.0    -      -       -      -
    325D  THR*     2.9    14.6    -      -       -      +
    326D  VAL*     4.2    14.1    -      -       +      -
    329D  LYS*     2.8    34.9    +      -       +      +
    331D  ILE*     3.9    31.0    -      -       +      -
    409D  HIS*     4.1    20.9    -      -       +      +
    410D  ALA*     4.6     6.1    -      -       +      -
    435D  PRO      5.5     0.2    -      -       -      +
    437D  PHE*     3.8    31.4    -      -       +      -
    439D  PHE*     5.5     0.4    -      -       +      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il