Contacts of the helix formed by residues 264 - 332 (chain A) in PDB entry 3KLT
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 264 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A LEU* 1.3 56.1 + - - +
266A THR* 3.4 14.5 + - - +
267A ALA* 3.2 28.4 + - + +
268A ALA* 2.7 36.4 + - - +
301C ALA* 3.9 3.7 - - - +
304C ARG* 3.2 35.6 - - - +
305C ASN* 3.6 19.7 + - - +
306D ASN* 5.0 5.0 + - - +
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Residues in contact with LEU 265 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A ASP* 1.3 72.7 + - - +
266A THR* 1.3 53.3 + - - +
268A ALA 3.2 0.3 + - - -
269A LEU* 2.7 61.6 + - + +
265B LEU* 3.7 39.7 - - + -
269B LEU* 5.4 7.9 - - + -
298C LEU* 4.3 16.4 - - + +
301C ALA* 3.9 8.1 - - - +
302C ALA* 4.3 20.0 - - + +
305C ASN* 3.2 22.8 + - - +
298D LEU* 5.2 3.4 - - + +
301D ALA* 5.9 0.9 - - + -
302D ALA* 3.9 16.2 - - + +
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Residues in contact with THR 266 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A ASP* 3.4 12.3 + - - +
265A LEU* 1.3 77.7 - - - +
267A ALA* 1.3 63.0 + - - +
269A LEU* 3.4 9.6 + - - +
270A ARG* 3.1 47.1 + - - +
305C ASN* 4.8 0.4 - - - +
299D SER* 5.2 0.5 + - - -
302D ALA* 3.9 9.5 - - - +
303D ASN* 3.8 13.7 + - - +
306D ASN* 3.4 24.0 + - - +
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Residues in contact with ALA 267 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A ASP* 3.2 29.7 + - + +
266A THR* 1.3 80.9 - - + +
268A ALA* 1.3 57.7 + - - +
270A ARG* 3.6 17.4 + - - +
271A ASP* 3.1 24.4 + - - +
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Residues in contact with ALA 268 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A ASP 2.7 21.3 + - - +
265A LEU 3.6 2.9 - - - +
267A ALA* 1.3 73.2 - - - +
269A LEU* 1.3 58.1 + - - +
271A ASP* 3.1 8.8 + - - +
272A VAL* 2.8 34.4 + - + +
297C ASP* 5.1 6.1 - - + +
298C LEU* 4.0 14.1 - - + -
301C ALA* 4.0 18.8 - - + -
304C ARG* 5.6 1.6 - - - +
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Residues in contact with LEU 269 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A LEU* 2.7 42.3 + - + +
266A THR* 3.7 7.4 - - - +
268A ALA* 1.3 73.3 - - - +
270A ARG* 1.3 56.0 + - - +
272A VAL* 3.4 3.4 + - + +
273A ARG* 2.8 31.9 + - - +
298C LEU* 3.6 21.7 - - + +
295D PHE* 3.4 21.2 - - + -
298D LEU* 3.6 58.6 - - + +
299D SER* 3.6 14.4 - - - +
302D ALA* 4.2 6.1 - - + -
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Residues in contact with ARG 270 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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266A THR* 3.1 26.9 + - - +
267A ALA* 3.7 25.5 + - - +
269A LEU* 1.3 78.1 - - - +
271A ASP* 1.3 63.2 + - - +
273A ARG* 3.4 6.9 + - + +
274A GLN* 3.0 53.1 + - + +
295D PHE* 4.3 7.4 - - + -
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Residues in contact with ASP 271 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267A ALA 3.1 15.2 + - - +
268A ALA* 3.1 12.7 + - - +
270A ARG* 1.3 75.3 - - - +
272A VAL* 1.3 64.2 + - - +
274A GLN* 3.0 17.9 + - - +
275A GLN* 3.0 47.8 + - - +
297C ASP* 5.2 2.8 - - - +
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Residues in contact with VAL 272 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268A ALA* 2.8 22.8 + - + +
269A LEU* 3.9 4.5 - - + +
271A ASP* 1.3 74.7 - - + +
273A ARG* 1.3 58.9 + - - +
275A GLN* 3.0 17.6 + - - +
276A TYR* 2.8 30.9 + - + +
290C TRP* 4.9 5.6 - - + -
294C LYS* 4.1 36.1 - - + +
297C ASP* 4.7 9.6 - - + +
298C LEU* 4.0 29.2 - - + -
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Residues in contact with ARG 273 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269A LEU 2.8 19.8 + - - +
270A ARG* 3.6 6.5 - - + +
272A VAL* 1.3 77.9 - - - +
274A GLN* 1.3 63.1 + - + +
276A TYR* 3.6 17.8 + - - +
277A GLU* 3.2 55.1 + - - +
288D GLU* 5.6 3.4 + - - +
291D TYR* 4.1 16.0 + - - +
292D LYS* 3.3 50.2 - - - +
295D PHE* 3.4 42.5 - - + +
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Residues in contact with GLN 274 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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270A ARG* 3.0 43.6 + - + +
271A ASP* 3.0 14.2 + - - +
273A ARG* 1.3 78.4 - - + +
275A GLN* 1.3 60.4 + - + +
277A GLU* 3.3 10.8 + - - +
278A SER* 2.8 29.8 + - - -
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Residues in contact with GLN 275 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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271A ASP* 3.0 49.7 + - - +
272A VAL* 3.5 16.1 - - - +
274A GLN* 1.3 77.0 - - + +
276A TYR* 1.3 56.4 + - - +
278A SER* 3.3 7.3 + - - -
279A VAL* 3.0 38.0 + - + +
290C TRP* 4.2 12.2 + - + +
294C LYS* 3.0 29.5 + - - +
297C ASP* 4.8 4.6 + - - -
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Residues in contact with TYR 276 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A P33 3.8 27.9 - - - -
272A VAL* 2.8 18.1 + - + +
273A ARG* 3.8 24.0 - - - +
275A GLN* 1.3 74.7 - - - +
277A GLU* 1.3 68.7 + - + +
279A VAL* 5.1 0.7 - - - -
280A ALA* 2.8 47.7 + - + +
290C TRP* 3.9 20.8 - + + -
291C TYR* 3.8 6.3 - + - -
287D ALA* 4.7 4.5 + - - +
288D GLU* 5.0 5.7 + - + -
291D TYR* 2.9 67.8 - + + -
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Residues in contact with GLU 277 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273A ARG* 3.2 56.3 + - - +
274A GLN* 3.7 9.9 - - - +
276A TYR* 1.3 85.4 - - + +
278A SER* 1.3 63.9 + - - +
280A ALA* 4.4 3.5 - - - +
281A ALA* 3.5 19.9 + - - +
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Residues in contact with SER 278 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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274A GLN 2.8 17.7 + - - -
275A GLN* 3.3 11.0 - - - -
276A TYR 3.1 0.2 - - - -
277A GLU* 1.3 80.8 - - - +
279A VAL* 1.3 64.8 + - - +
281A ALA* 3.8 3.5 - - - +
282A LYS* 3.5 16.1 + - - +
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Residues in contact with VAL 279 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A P33 4.0 20.2 - - - +
275A GLN* 3.0 19.1 + - + +
276A TYR 4.3 1.1 - - - +
278A SER* 1.3 75.6 - - - +
280A ALA* 1.3 58.8 + - - +
281A ALA 3.0 2.7 - - - -
282A LYS* 2.8 16.7 + - + -
283A ASN* 2.7 60.2 + - - +
290C TRP* 4.2 20.4 - - + +
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Residues in contact with ALA 280 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 3.7 33.7 - - - +
276A TYR* 2.8 42.6 + - + +
277A GLU* 4.4 3.8 - - - +
279A VAL* 1.3 72.7 - - - +
281A ALA* 1.3 55.8 - - - +
283A ASN* 4.2 0.7 - - - +
284A LEU* 3.1 28.8 + - - +
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Residues in contact with ALA 281 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277A GLU 3.5 17.1 + - - +
278A SER 3.8 4.3 - - - +
279A VAL 3.0 0.8 - - - -
280A ALA* 1.3 77.2 - - - +
282A LYS* 1.3 66.9 + - - +
284A LEU* 3.4 16.3 + - - +
285A GLN* 3.4 17.3 + - - +
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Residues in contact with LYS 282 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278A SER 3.5 10.6 + - - +
279A VAL* 2.8 17.1 + - + +
281A ALA* 1.3 78.2 - - - +
283A ASN* 1.3 63.2 + - - +
285A GLN* 2.9 24.2 + - - +
286A GLU* 3.0 37.3 + - + +
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Residues in contact with ASN 283 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 3.0 108.2 + - - +
279A VAL* 2.7 35.3 + - - +
280A ALA 4.2 0.2 - - - +
282A LYS* 1.3 72.3 - - - +
284A LEU* 1.3 61.9 + - - +
285A GLN 2.9 6.3 + - - -
286A GLU* 3.5 15.2 - - - +
287A ALA* 3.1 12.1 + - - +
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Residues in contact with LEU 284 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 4.5 7.3 - - - -
280A ALA 3.1 21.6 + - - +
281A ALA* 3.5 11.0 - - - +
282A LYS 3.2 0.2 - - - -
283A ASN* 1.3 74.9 - - - +
285A GLN* 1.3 62.9 + - - +
287A ALA* 5.0 3.6 - - + -
288A GLU* 2.9 43.2 + - + +
284D LEU* 3.5 42.6 - - + -
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Residues in contact with GLN 285 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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281A ALA 3.4 13.0 + - - +
282A LYS* 2.9 10.6 + - - +
284A LEU* 1.3 85.2 + - - +
286A GLU* 1.3 58.6 + - + +
287A ALA 3.0 4.9 - - - -
288A GLU* 4.0 26.3 + - - +
289A GLU* 2.9 54.1 + - - +
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Residues in contact with GLU 286 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 3.0 23.5 + - - +
282A LYS* 3.0 33.0 + - + +
283A ASN* 3.2 12.4 + - - +
285A GLN* 1.3 75.6 - - + +
287A ALA* 1.3 56.0 + - - +
289A GLU* 4.8 6.0 - - - +
290A TRP* 3.2 23.6 + - - +
2C PG4 3.5 7.4 + - - +
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Residues in contact with ALA 287 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 3.4 31.0 - - - +
283A ASN 3.1 6.4 + - - +
284A LEU* 4.6 4.0 - - + +
285A GLN 3.0 0.4 - - - -
286A GLU* 1.3 78.2 - - - +
288A GLU* 1.3 60.0 + - - +
289A GLU 3.1 1.6 - - - -
290A TRP* 4.1 0.2 - - - -
291A TYR* 2.8 49.7 + - + +
2C PG4 3.5 13.2 - - - -
276D TYR* 5.2 0.7 - - - +
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Residues in contact with GLU 288 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3A SM 4.3 8.5 - - - -
284A LEU* 2.9 38.7 + - + +
285A GLN* 3.3 26.7 + - - +
287A ALA* 1.3 78.3 - - - +
289A GLU* 1.3 58.5 + - + +
291A TYR* 4.5 2.9 - - - +
292A LYS* 3.0 45.9 + - + +
276D TYR* 5.4 2.5 - - - -
284D LEU* 5.8 0.5 - - - +
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Residues in contact with GLU 289 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
285A GLN* 2.9 38.2 + - - +
286A GLU* 4.8 4.6 - - - +
288A GLU* 1.3 77.7 - - + +
290A TRP* 1.3 60.1 + - - +
292A LYS* 3.1 8.2 + - - +
293A SER* 2.9 30.4 + - - -
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Residues in contact with TRP 290 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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286A GLU 3.2 22.6 + - - +
287A ALA* 3.3 5.8 + - - +
289A GLU* 1.3 79.1 - - - +
291A TYR* 1.3 93.1 + + - +
293A SER* 3.0 25.7 + - - -
294A LYS* 3.1 49.7 + - + +
2C PG4 4.2 24.5 - - - -
5C PG4 5.5 2.9 - - - -
272C VAL* 4.7 4.5 - - + -
275C GLN* 4.2 20.6 + - + -
276C TYR* 4.1 28.9 - + + -
279C VAL* 4.4 18.8 - - + +
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Residues in contact with TYR 291 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 6.3 0.7 - - - -
287A ALA* 2.8 40.1 + - + +
288A GLU* 4.7 2.7 - - - +
290A TRP* 1.3 92.0 - + - +
292A LYS* 1.3 61.0 + - + +
294A LYS* 4.0 2.2 - - - -
295A PHE* 3.4 22.0 + - - +
291B TYR* 2.6 43.6 + + - -
2C PG4 2.9 47.3 - - - -
5C PG4 4.0 22.9 + - - +
276C TYR* 3.6 1.7 - + - -
3D 1PE 5.7 4.3 - - - -
273D ARG* 5.2 0.7 + - - -
276D TYR* 3.0 41.9 - + + +
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Residues in contact with LYS 292 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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288A GLU* 3.0 37.3 + - + +
289A GLU* 3.1 8.8 + - + +
290A TRP 3.0 1.2 - - - -
291A TYR* 1.3 79.2 - - + +
293A SER* 1.3 62.4 + - - +
294A LYS 3.2 0.8 + - - -
295A PHE* 3.9 3.3 + - - +
296A ALA* 3.6 17.3 + - - +
273D ARG* 4.2 32.6 + - - +
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Residues in contact with SER 293 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A GLU 2.9 14.1 + - - -
290A TRP* 3.0 17.9 + - - -
292A LYS* 1.3 77.9 - - - +
294A LYS* 1.3 76.0 + - - +
296A ALA* 3.2 14.3 - - - +
297A ASP* 3.0 23.2 - - - +
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Residues in contact with LYS 294 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290A TRP* 3.1 55.3 + - + +
291A TYR* 4.3 4.0 - - - +
293A SER* 1.3 91.7 + - - +
295A PHE* 1.3 63.3 + - - +
296A ALA 2.8 6.0 + - - -
297A ASP* 3.0 28.0 + - - +
298A LEU* 3.2 19.9 + - + +
5C PG4 4.8 6.5 - - - +
272C VAL* 4.1 24.4 - - + +
275C GLN* 2.9 33.4 + - - +
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Residues in contact with PHE 295 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A TYR 3.4 17.6 + - - +
292A LYS 4.3 2.7 - - - +
293A SER 3.6 0.2 - - - -
294A LYS* 1.3 76.7 - - - +
296A ALA* 1.3 58.3 + - - +
298A LEU* 4.2 9.5 - - + +
299A SER* 3.0 38.3 + - - -
5C PG4 4.7 9.5 + - - +
269D LEU* 3.6 42.4 - - + -
270D ARG* 4.8 4.3 - - - -
272D VAL* 5.5 4.0 - - + -
273D ARG* 3.2 67.5 - - + +
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Residues in contact with ALA 296 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292A LYS 3.6 12.5 + - - +
293A SER* 3.2 15.5 - - - +
294A LYS 2.8 1.0 - - - -
295A PHE* 1.3 79.0 - - - +
297A ASP* 1.3 58.0 + - - +
298A LEU 3.2 0.2 - - - -
299A SER* 2.9 6.9 + - - -
300A GLU* 2.7 40.1 + - - +
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Residues in contact with ASP 297 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293A SER 3.0 17.1 - - - +
294A LYS* 3.0 28.6 + - - +
296A ALA* 1.3 76.1 - - - +
298A LEU* 1.3 58.8 + - + +
300A GLU* 3.1 20.8 - - - +
301A ALA* 3.0 29.6 + - - +
304A ARG* 4.6 0.3 + - - -
268C ALA* 4.4 7.3 - - + +
272C VAL* 4.9 11.2 - - + +
275C GLN* 5.4 2.9 + - - -
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Residues in contact with LEU 298 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294A LYS 3.2 15.2 + - - +
295A PHE* 4.2 9.4 - - + +
297A ASP* 1.3 77.2 - - - +
299A SER* 1.3 58.6 + - - +
301A ALA* 4.3 0.2 - - - -
302A ALA* 2.9 31.9 + - - +
298B LEU* 4.1 15.0 - - + -
5C PG4 4.7 15.9 - - - +
265C LEU* 3.6 12.0 - - + +
268C ALA* 3.6 28.0 - - + +
269C LEU* 3.6 33.4 - - + +
272C VAL* 3.6 17.9 - - + -
269D LEU* 3.3 21.0 - - + +
----------------------------------------------------------
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Residues in contact with SER 299 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A PHE* 3.0 35.3 + - - -
296A ALA* 2.9 7.7 + - - -
298A LEU* 1.3 78.3 - - - +
300A GLU* 1.3 59.3 + - - +
302A ALA* 4.0 1.2 - - - +
303A ASN* 3.1 34.7 + - - +
266D THR* 5.0 3.2 - - - +
269D LEU* 3.6 15.2 - - - +
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Residues in contact with GLU 300 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A ALA* 2.7 18.4 + - - +
297A ASP* 3.1 28.5 - - - +
299A SER* 1.3 71.8 - - - +
301A ALA* 1.3 68.6 + - - +
303A ASN* 3.3 9.0 + - - +
304A ARG* 3.1 53.7 + - - +
263C PRO* 5.6 1.0 - - - +
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Residues in contact with ALA 301 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297A ASP 3.0 19.9 + - - +
298A LEU 3.7 3.8 - - - +
300A GLU* 1.3 76.3 - - - +
302A ALA* 1.3 58.8 + - - +
304A ARG* 3.1 24.9 + - - +
305A ASN* 2.9 31.0 + - - +
263C PRO 4.0 5.6 - - - +
265C LEU* 3.9 15.9 + - + +
268C ALA* 3.8 23.1 - - + -
----------------------------------------------------------
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Residues in contact with ALA 302 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298A LEU 2.9 19.0 + - - +
299A SER 4.0 1.6 - - - +
301A ALA* 1.3 76.2 - - - +
303A ASN* 1.3 58.4 + - - +
305A ASN* 3.6 6.8 - - - +
306A ASN* 2.9 34.9 + - - -
265C LEU* 4.1 17.2 - - + +
265D LEU 4.6 8.7 - - - +
266D THR* 4.0 15.5 - - + -
269D LEU* 3.7 18.4 - - + -
----------------------------------------------------------
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Residues in contact with ASN 303 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A SER* 3.1 20.3 + - - +
300A GLU* 3.3 11.8 + - - +
301A ALA 3.2 0.8 - - - -
302A ALA* 1.3 74.5 - - - +
304A ARG* 1.3 65.3 + - + +
306A ASN* 3.5 6.8 + - - +
307A ASP* 3.1 21.3 + - - +
266D THR* 3.5 20.8 - - - +
----------------------------------------------------------
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Residues in contact with ARG 304 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297A ASP 4.6 0.6 + - - -
300A GLU* 3.1 51.8 + - - +
301A ALA* 3.1 32.8 - - - +
303A ASN* 1.3 72.8 - - + +
305A ASN* 1.3 60.0 + - - +
307A ASP* 3.0 10.6 + - - +
308A ALA* 2.9 29.4 + - - +
263C PRO* 3.2 52.8 + - - +
268C ALA* 5.5 0.8 - - - +
----------------------------------------------------------
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Residues in contact with ASN 305 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301A ALA 2.9 17.8 + - - +
302A ALA* 3.6 8.3 - - - +
304A ARG* 1.3 72.6 - - - +
306A ASN* 1.3 64.2 + - - +
307A ASP 2.9 5.3 + - - -
308A ALA* 3.1 15.2 + - - +
309A LEU* 3.2 13.0 + - - +
302B ALA* 4.7 7.1 + - - +
305B ASN* 2.9 32.9 + - - +
306B ASN* 5.1 4.1 + - - +
309B LEU* 4.7 15.1 - - - +
264C ASP* 5.5 5.6 + - - +
265C LEU* 3.6 32.5 - - + +
266C THR* 5.5 0.6 - - - +
265D LEU 5.5 0.6 - - - +
----------------------------------------------------------
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Residues in contact with ASN 306 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302A ALA 2.9 23.4 + - - +
303A ASN* 3.8 7.3 + - - +
305A ASN* 1.3 71.6 - - - +
307A ASP* 1.3 58.6 + - - +
309A LEU* 3.9 8.2 + - - +
310A ARG* 3.3 21.7 + - - +
305B ASN* 4.0 11.6 + - - +
265D LEU* 3.5 24.6 + - - +
266D THR* 3.8 34.8 + - - +
----------------------------------------------------------
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Residues in contact with ASP 307 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303A ASN 3.1 13.2 + - - +
304A ARG* 3.0 13.5 + - - +
305A ASN 2.9 0.6 - - - -
306A ASN* 1.3 74.5 - - - +
308A ALA* 1.3 67.1 + - - +
309A LEU 3.0 1.1 - - - -
310A ARG* 2.9 13.9 + - - +
311A GLN* 2.8 28.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 308 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304A ARG 2.9 15.4 + - - +
305A ASN* 3.1 11.2 + - - +
307A ASP* 1.3 74.7 - - - +
309A LEU* 1.3 56.1 + - - +
311A GLN* 3.3 9.3 + - - +
312A ALA* 2.8 29.6 + - - +
309B LEU* 3.6 22.0 - - + +
313B LYS* 6.5 0.4 - - - -
----------------------------------------------------------
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Residues in contact with LEU 309 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305A ASN 3.2 10.7 + - - +
306A ASN* 3.9 9.6 - - - +
307A ASP 3.0 0.4 - - - -
308A ALA* 1.3 73.3 - - - +
310A ARG* 1.3 54.7 + - - +
311A GLN 2.9 5.6 + - - -
312A ALA* 3.0 0.7 + - - +
313A LYS* 2.7 61.3 + - + +
305B ASN* 3.6 26.0 - - - +
308B ALA* 3.3 45.1 - - + +
309B LEU* 3.6 18.9 - - + +
312B ALA* 4.6 1.8 - - + -
----------------------------------------------------------
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Residues in contact with ARG 310 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306A ASN 3.3 12.1 + - - +
307A ASP* 2.9 16.2 + - - +
309A LEU* 1.3 79.1 - - - +
311A GLN* 1.3 56.0 + - - +
313A LYS* 4.2 7.5 - - - +
314A GLN* 2.8 57.2 + - + +
----------------------------------------------------------
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Residues in contact with GLN 311 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307A ASP* 2.8 20.7 + - - +
308A ALA* 3.5 9.5 - - - +
310A ARG* 1.3 79.0 - - - +
312A ALA* 1.3 61.8 + - - +
313A LYS 3.3 1.3 - - - -
314A GLN* 3.4 9.9 + - + +
315A GLU* 2.8 62.2 + - - +
313B LYS* 5.9 0.5 + - - -
----------------------------------------------------------
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Residues in contact with ALA 312 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308A ALA 2.8 17.2 + - - +
309A LEU 3.0 2.9 + - - +
311A GLN* 1.3 79.8 + - - +
313A LYS* 1.3 60.0 + - - +
315A GLU* 3.5 7.6 + - - +
316A SER* 2.9 27.7 + - - -
309B LEU* 3.8 18.6 - - + -
312B ALA* 3.9 20.1 - - + +
313B LYS* 4.6 15.5 - - + +
316B SER* 3.6 6.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 313 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309A LEU* 2.7 59.6 + - + +
310A ARG* 4.4 6.5 - - - +
312A ALA* 1.3 73.7 - - - +
314A GLN* 1.3 59.2 + - + +
316A SER* 3.1 9.4 + - - -
317A THR* 3.1 32.2 + - + +
308B ALA* 3.8 11.1 + - - +
311B GLN* 3.4 23.8 + - - -
312B ALA* 3.9 9.6 - - + +
315B GLU* 5.2 2.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 314 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A ARG* 2.8 58.2 + - - +
311A GLN* 3.4 9.8 + - - +
312A ALA 3.4 0.2 - - - -
313A LYS* 1.3 75.0 - - + +
315A GLU* 1.3 60.4 + - - +
317A THR* 3.1 11.5 + - - +
318A GLU* 2.8 32.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 315 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311A GLN* 2.8 52.8 + - - +
312A ALA* 3.6 7.1 - - - +
314A GLN* 1.3 75.7 - - - +
316A SER* 1.3 60.0 + - - +
318A GLU* 2.9 13.2 + - - +
319A TYR* 2.9 52.1 + - + -
313B LYS* 6.0 0.3 + - - -
316B SER* 3.3 20.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 316 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312A ALA 2.9 15.2 + - - -
313A LYS* 3.1 16.1 + - - -
315A GLU* 1.3 75.6 - - - +
317A THR* 1.3 60.9 + - - +
320A ARG* 3.0 23.7 + - - +
312B ALA* 4.3 7.2 - - - -
315B GLU* 3.1 39.8 + - - +
316B SER* 3.0 16.3 + - - +
319B TYR* 3.4 8.7 - - - -
----------------------------------------------------------
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Residues in contact with THR 317 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313A LYS* 3.1 14.5 + - + +
314A GLN* 3.1 17.0 + - - +
316A SER* 1.3 78.0 - - - +
318A GLU* 1.3 60.8 + - - +
319A TYR 3.5 0.2 - - - -
320A ARG* 3.6 35.4 - - - +
321A ARG* 3.1 40.5 + - - +
----------------------------------------------------------
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Residues in contact with GLU 318 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A GLN* 2.8 21.0 + - - +
315A GLU* 2.9 16.2 + - - +
317A THR* 1.3 77.6 - - - +
319A TYR* 1.3 72.1 + - + +
320A ARG 3.2 0.2 - - - -
321A ARG* 3.8 5.2 + - - +
322A GLN* 3.6 17.2 + - - +
----------------------------------------------------------
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Residues in contact with TYR 319 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315A GLU* 2.9 45.2 + - + +
318A GLU* 1.3 84.1 - - + +
320A ARG* 1.3 64.7 + - - +
322A GLN* 3.3 26.3 + - - +
323A VAL* 3.2 27.0 + - - +
316B SER* 3.9 14.4 - - - +
319B TYR* 3.8 21.1 - - + -
320B ARG* 3.4 50.1 + - + +
323B VAL* 4.2 3.3 - - + +
----------------------------------------------------------
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Residues in contact with ARG 320 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316A SER* 3.0 22.5 + - - +
317A THR* 3.6 36.2 - - - +
318A GLU 3.2 0.4 - - - -
319A TYR* 1.3 81.4 - - - +
321A ARG* 1.3 86.7 - - - +
323A VAL* 3.5 8.0 + - - +
324A GLN* 3.5 16.3 + - - +
315B GLU* 5.5 2.2 - - - -
319B TYR* 4.1 29.8 - - + -
----------------------------------------------------------
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Residues in contact with ARG 321 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A THR* 3.1 25.3 + - - +
318A GLU* 4.2 5.4 - - - +
319A TYR 3.3 0.4 - - - -
320A ARG* 1.3 101.6 - - + +
322A GLN* 1.3 61.1 + - - +
324A GLN* 2.8 41.3 + - - +
325A SER* 3.2 12.0 + - - -
----------------------------------------------------------
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Residues in contact with GLN 322 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318A GLU 3.6 12.0 + - - +
319A TYR* 3.3 31.4 + - - +
321A ARG* 1.3 79.5 - - - +
323A VAL* 1.3 61.2 + - - +
325A SER* 3.1 16.2 + - - -
326A LEU* 3.1 21.9 + - + +
323B VAL* 3.2 39.6 - - + +
----------------------------------------------------------
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Residues in contact with VAL 323 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319A TYR 3.2 12.0 + - - +
320A ARG 3.6 9.2 - - - +
321A ARG 3.2 0.2 - - - -
322A GLN* 1.3 76.8 - - - +
324A GLN* 1.3 57.0 + - - +
325A SER 3.0 5.1 + - - -
326A LEU* 4.8 0.4 - - - -
327A THR* 2.7 42.0 + - - +
319B TYR* 4.2 12.1 - - + +
322B GLN* 3.4 36.8 - - + +
323B VAL* 3.9 17.9 - - + +
326B LEU* 4.0 13.5 - - + +
----------------------------------------------------------
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Residues in contact with GLN 324 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320A ARG* 3.5 8.3 + - - +
321A ARG* 2.8 34.1 + - - +
323A VAL* 1.3 79.6 - - - +
325A SER* 1.3 60.4 + - - +
327A THR* 4.5 5.3 - - - -
328A CYS* 3.8 13.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 325 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A ARG 3.2 8.6 + - - -
322A GLN* 3.1 10.4 + - - -
323A VAL 3.0 0.8 - - - -
324A GLN* 1.3 79.5 + - - +
326A LEU* 1.3 62.7 + - - +
327A THR 3.1 1.6 - - - -
328A CYS* 2.8 23.5 + - - +
329A GLU* 2.9 19.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 326 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322A GLN* 3.1 23.1 + - + +
325A SER* 1.3 77.1 - - - +
327A THR* 1.3 57.7 + - - +
329A GLU* 3.1 9.7 + - + +
330A VAL* 2.8 34.0 + - - +
323B VAL* 3.6 36.1 - - + +
326B LEU* 3.4 28.7 - - + +
327B THR* 3.5 25.8 - - + +
330B VAL* 4.3 16.3 - - + +
----------------------------------------------------------
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Residues in contact with THR 327 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323A VAL* 2.7 29.5 + - - +
324A GLN* 4.7 5.1 - - - -
325A SER 3.1 0.2 - - - -
326A LEU* 1.3 76.6 - - - +
328A CYS* 1.3 62.7 + - - +
330A VAL* 3.2 5.1 + - + +
331A ASP* 3.0 49.3 + - - +
326B LEU* 3.8 14.6 - - + +
----------------------------------------------------------
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Residues in contact with CYS 328 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324A GLN 3.8 15.1 + - - +
325A SER* 2.8 15.3 + - - +
327A THR* 1.3 79.5 - - - +
329A GLU* 1.3 63.3 + - - +
331A ASP* 4.4 4.6 - - - +
332A ALA* 3.5 23.6 + - - +
----------------------------------------------------------
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Residues in contact with GLU 329 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
325A SER* 2.9 16.0 + - - +
326A LEU* 3.5 13.5 - - + +
327A THR 3.0 0.2 - - - -
328A CYS* 1.3 86.1 - - + +
330A VAL* 1.3 66.1 + - - +
331A ASP 3.3 1.3 - - - -
332A ALA* 3.5 6.4 + - - +
333A LEU* 3.3 26.6 + - - +
330B VAL* 4.4 13.5 - - + -
334B LYS* 4.1 21.3 + - - +
----------------------------------------------------------
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Residues in contact with VAL 330 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326A LEU 2.8 20.3 + - - +
327A THR* 3.9 6.1 - - + +
329A GLU* 1.3 76.4 - - - +
331A ASP* 1.3 68.5 + - - +
333A LEU* 3.4 4.8 + - - -
334A LYS* 3.2 39.0 + - + +
326B LEU* 3.9 24.9 - - + +
329B GLU* 4.0 22.2 - - + +
330B VAL* 3.6 23.6 - - + +
333B LEU* 4.0 3.5 - - + +
----------------------------------------------------------
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Residues in contact with ASP 331 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327A THR* 3.0 34.1 + - - +
328A CYS* 4.7 3.7 - - - +
330A VAL* 1.3 81.4 - - - +
332A ALA* 1.3 58.2 + - - +
333A LEU 2.9 10.3 + - - -
334A LYS 2.9 25.4 + - - +
----------------------------------------------------------
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Residues in contact with ALA 332 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328A CYS* 3.5 19.8 + - - +
329A GLU* 3.5 8.4 + - - +
330A VAL 3.5 0.4 - - - -
331A ASP* 1.3 76.6 - - - +
333A LEU* 1.3 60.8 + - - +
334A LYS 5.0 0.2 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il