Contacts of the helix formed by residues 265 - 333 (chain D) in PDB entry 3KLT
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 265 (chain D).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302A ALA* 4.6 8.6 + - - +
305A ASN* 5.5 0.6 - - - +
306A ASN* 3.5 26.3 + - - +
301B ALA* 4.5 20.2 + - + +
304B ARG* 6.3 2.7 - - - +
305B ASN* 4.4 22.7 + - + +
265C LEU* 4.6 17.5 - - - +
266D THR* 1.3 68.9 + - - +
267D ALA* 3.1 45.9 + - + +
268D ALA* 3.8 17.7 + - + +
269D LEU* 4.1 4.7 + - - +
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Residues in contact with THR 266 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A SER* 5.0 3.4 - - - +
302A ALA* 4.0 14.8 - - + -
303A ASN* 3.5 24.5 - - - +
306A ASN* 3.8 18.7 + - - +
265D LEU* 1.3 73.1 - - - +
267D ALA* 1.3 60.6 + - - +
268D ALA 3.1 2.5 - - - -
269D LEU* 3.2 11.7 + - + +
270D ARG* 2.9 31.1 + - - +
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Residues in contact with ALA 267 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265D LEU* 3.1 20.0 - - + +
266D THR* 1.3 79.5 + - - +
268D ALA* 1.3 60.8 + - - +
270D ARG* 4.2 10.1 - - - +
271D ASP* 3.2 23.7 + - - +
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Residues in contact with ALA 268 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
297B ASP* 5.2 4.3 - - + +
298B LEU* 4.0 12.8 - - + -
301B ALA* 3.7 30.5 - - + -
265D LEU* 3.8 11.8 + - + +
266D THR 3.1 0.6 - - - -
267D ALA* 1.3 77.0 - - - +
269D LEU* 1.3 63.7 + - - +
271D ASP* 3.5 6.0 + - - +
272D VAL* 3.2 26.9 + - - +
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Residues in contact with LEU 269 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A PHE* 3.6 26.9 - - + -
298A LEU* 3.3 52.9 - - + +
299A SER* 3.6 20.2 - - - +
302A ALA* 3.7 17.3 - - + -
298B LEU* 3.9 23.1 - - + -
265C LEU* 5.3 4.9 - - + -
269C LEU* 5.5 0.7 - - + -
265D LEU 4.1 4.0 + - - +
266D THR* 3.2 14.1 + - + +
268D ALA* 1.3 76.0 - - - +
270D ARG* 1.3 65.9 + - - +
271D ASP 3.1 1.8 - - - -
272D VAL* 2.9 15.2 + - + +
273D ARG 3.0 12.0 + - - -
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Residues in contact with ARG 270 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A PHE* 4.8 7.4 - - - -
266D THR 2.9 17.8 + - - +
267D ALA* 4.2 8.1 - - - +
269D LEU* 1.3 75.5 - - - +
271D ASP* 1.3 60.9 + - - +
273D ARG* 4.4 1.6 - - - +
274D GLN* 3.1 57.9 + - + +
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Residues in contact with ASP 271 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267D ALA 3.2 18.3 + - - +
268D ALA* 3.6 7.6 - - - +
269D LEU 3.1 0.4 - - - -
270D ARG* 1.3 81.0 - - - +
272D VAL* 1.3 64.0 + - + +
274D GLN* 3.7 6.0 + - - +
275D GLN* 3.2 41.9 + - - +
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Residues in contact with VAL 272 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A PHE* 5.5 5.8 - - + -
290B TRP* 4.7 3.4 - - + -
294B LYS* 4.5 31.4 - - + +
297B ASP* 5.2 6.5 - - + +
298B LEU* 3.8 32.1 - - + -
5C PG4 4.9 14.4 - - - -
268D ALA 3.2 13.9 + - - +
269D LEU* 2.9 12.9 + - + +
271D ASP* 1.3 75.2 - - + +
273D ARG* 1.3 63.3 + - - +
275D GLN* 2.9 12.7 + - - +
276D TYR* 2.8 29.6 + - + +
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Residues in contact with ARG 273 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
291A TYR 5.2 0.2 + - - -
292A LYS* 4.2 35.1 + - - +
295A PHE* 3.2 66.6 - - + +
269D LEU 3.0 7.5 + - - +
270D ARG* 4.4 3.1 - - - +
272D VAL* 1.3 78.6 - - - +
274D GLN* 1.3 65.4 + - + +
276D TYR* 3.1 11.6 + - + +
277D GLU* 3.0 53.6 + - + +
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Residues in contact with GLN 274 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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270D ARG* 3.1 53.3 + - + +
271D ASP* 4.0 6.0 - - - +
272D VAL 3.2 0.6 - - - -
273D ARG* 1.3 78.8 - - + +
275D GLN* 1.3 61.6 + - + +
277D GLU* 4.6 8.8 - - - +
278D SER* 3.4 23.7 + - - -
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Residues in contact with GLN 275 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290B TRP* 3.9 10.8 - - + +
294B LYS* 2.9 38.5 + - - +
297B ASP* 5.3 0.9 - - - +
271D ASP* 3.2 32.7 + - - +
272D VAL* 2.9 13.9 + - - +
274D GLN* 1.3 77.8 - - + +
276D TYR* 1.3 63.8 + - - +
278D SER* 3.6 4.1 + - - -
279D VAL* 3.1 31.3 + - + +
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Residues in contact with TYR 276 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287A ALA* 4.6 1.9 + - - +
288A GLU* 5.4 2.3 - - - -
291A TYR* 3.0 57.0 - + + +
290B TRP* 3.5 29.6 - + + -
291B TYR* 3.9 6.1 - + - -
5C PG4 5.4 6.7 - - - +
3D 1PE 3.7 25.5 - - - +
272D VAL* 2.8 14.3 + - + +
273D ARG* 3.1 15.9 + - + +
275D GLN* 1.3 76.9 - - - +
277D GLU* 1.3 66.5 + - + +
279D VAL* 3.2 3.8 + - - +
280D ALA* 2.7 51.4 + - + +
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Residues in contact with GLU 277 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273D ARG* 3.0 54.5 + - + +
274D GLN* 4.6 8.1 - - - +
276D TYR* 1.3 90.3 - - + +
278D SER* 1.3 61.9 + - - +
279D VAL 3.0 1.6 - - - -
280D ALA* 3.8 5.3 - - + +
281D ALA* 2.8 35.4 + - - +
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Residues in contact with SER 278 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
274D GLN 3.4 18.6 + - - -
275D GLN* 3.9 6.1 - - - -
276D TYR 3.4 0.2 - - - -
277D GLU* 1.3 78.4 - - - +
279D VAL* 1.3 61.5 + - - +
281D ALA* 4.2 4.6 - - - +
282D LYS* 3.5 20.6 + - - +
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Residues in contact with VAL 279 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
290B TRP* 4.0 19.3 - - + +
3D 1PE 3.5 44.6 - - - +
275D GLN* 3.1 19.5 + - + +
276D TYR* 3.2 4.2 + - - +
277D GLU 3.0 0.4 - - - -
278D SER* 1.3 79.3 - - - +
280D ALA* 1.3 56.0 + - - +
281D ALA 3.2 1.3 - - - -
282D LYS* 3.2 5.5 + - + +
283D ASN* 2.7 52.3 + - - +
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Residues in contact with ALA 280 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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3D 1PE 3.7 30.0 - - - -
276D TYR* 2.7 35.6 + - + +
277D GLU* 3.8 8.7 - - + +
279D VAL* 1.3 73.2 - - - +
281D ALA* 1.3 62.7 + - - +
283D ASN* 3.3 1.1 + - - +
284D LEU* 3.0 33.9 + - + +
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Residues in contact with ALA 281 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
277D GLU 2.8 21.6 + - - +
278D SER* 4.2 5.2 - - - +
280D ALA* 1.3 73.3 - - - +
282D LYS* 1.3 63.2 + - - +
283D ASN 3.1 1.0 + - - -
284D LEU* 3.1 17.3 + - - +
285D GLN* 3.2 16.9 + - - +
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Residues in contact with LYS 282 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3D 1PE 5.4 7.6 - - - +
278D SER 3.5 16.8 + - - +
279D VAL* 3.2 7.2 + - + +
281D ALA* 1.3 80.2 - - - +
283D ASN* 1.3 61.1 + - - +
285D GLN* 2.8 52.4 + - - +
286D GLU* 3.2 27.9 + - - +
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Residues in contact with ASN 283 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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4B P6G 3.5 30.5 - - - +
3D 1PE 3.1 77.4 + - - +
279D VAL* 2.7 27.1 + - - +
280D ALA 3.5 2.7 - - - +
281D ALA 3.1 0.2 - - - -
282D LYS* 1.3 79.1 - - - +
284D LEU* 1.3 61.0 + - - +
286D GLU* 3.9 4.7 - - - +
287D ALA* 3.0 30.9 + - - +
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Residues in contact with LEU 284 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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284A LEU* 3.5 44.6 - - + -
288A GLU* 5.8 0.4 - - - +
4B P6G 6.0 0.2 - - - -
3D 1PE 4.1 19.1 - - - +
280D ALA* 3.0 29.9 + - + +
281D ALA* 3.1 9.4 + - - +
283D ASN* 1.3 73.9 - - - +
285D GLN* 1.3 60.2 + - - +
287D ALA* 3.3 5.0 + - - +
288D GLU* 2.9 36.3 + - - +
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Residues in contact with GLN 285 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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281D ALA* 3.2 9.3 + - - +
282D LYS* 2.8 56.8 + - + +
284D LEU* 1.3 78.2 - - - +
286D GLU* 1.3 63.1 + - + +
288D GLU* 4.1 6.2 - - - +
289D GLU* 3.1 32.3 + - - +
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Residues in contact with GLU 286 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1B SM 3.7 14.3 - - - -
4B P6G 4.1 13.4 - - - +
3D 1PE 4.7 8.8 + - - -
6D PGE 3.5 44.9 + - - +
282D LYS* 3.2 33.7 + - - +
283D ASN* 4.0 8.3 - - - +
285D GLN* 1.3 81.2 - - + +
287D ALA* 1.3 61.7 + - - +
289D GLU* 3.7 14.2 - - - +
290D TRP* 3.0 27.2 + - - +
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Residues in contact with ALA 287 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
276A TYR* 5.1 1.8 - - - +
4B P6G 3.7 30.3 + - - +
283D ASN 3.0 18.7 + - - +
284D LEU* 3.7 6.1 - - - +
286D GLU* 1.3 75.3 - - - +
288D GLU* 1.3 67.4 + - - +
290D TRP* 2.8 11.4 + - - +
291D TYR* 2.9 30.8 + - + -
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Residues in contact with GLU 288 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
273A ARG* 5.6 2.6 + - - +
276A TYR* 5.0 6.0 + - + -
284D LEU* 2.9 22.6 + - - +
285D GLN* 4.1 5.4 - - - +
287D ALA* 1.3 72.8 - - - +
289D GLU* 1.3 64.0 + - - +
291D TYR* 3.5 6.1 + - - +
292D LYS* 3.1 46.0 + - + +
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Residues in contact with GLU 289 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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6D PGE 6.0 5.9 - - - +
285D GLN* 3.1 22.1 + - - +
286D GLU* 3.7 15.8 - - - +
288D GLU* 1.3 77.0 - - - +
290D TRP* 1.3 59.7 + - - +
292D LYS* 3.6 7.5 + - - +
293D SER* 3.0 26.5 + - - -
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Residues in contact with TRP 290 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
4B P6G 3.7 28.0 - - - -
272B VAL* 4.8 6.1 - - + -
275B GLN* 4.2 9.2 + - + +
276B TYR* 3.9 42.6 - + + -
279B VAL* 3.9 14.8 - - + +
6D PGE 3.8 29.1 - - - -
8D CA 4.2 7.4 - - - -
286D GLU 3.0 15.6 + - - +
287D ALA 2.8 10.5 + - - +
289D GLU* 1.3 75.7 - - - +
291D TYR* 1.3 95.9 + + - +
293D SER* 2.6 21.1 + - - -
294D LYS* 3.1 55.9 + - + +
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Residues in contact with TYR 291 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A P33 5.4 1.5 - - - -
273A ARG* 4.1 7.7 + - - +
276A TYR* 2.9 55.2 - + + -
4B P6G 3.5 37.9 + - - -
276B TYR* 4.4 1.2 - + - -
291C TYR* 2.6 38.3 + + - -
287D ALA* 2.9 36.7 + - + +
288D GLU* 4.1 3.8 - - - +
290D TRP* 1.3 91.8 - + - +
292D LYS* 1.3 61.3 + - - +
294D LYS* 3.2 4.5 + - + +
295D PHE* 2.8 30.7 + - - +
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Residues in contact with LYS 292 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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273A ARG* 3.3 31.6 - - - +
288D GLU* 3.1 35.6 + - + +
289D GLU* 3.9 6.7 - - - +
291D TYR* 1.3 75.8 - - - +
293D SER* 1.3 56.6 + - - +
295D PHE* 3.5 6.6 + - - +
296D ALA* 2.9 27.3 + - - +
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Residues in contact with SER 293 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
8D CA 4.2 4.3 - - - -
289D GLU* 3.0 14.2 + - - +
290D TRP* 2.6 26.0 + - - -
292D LYS* 1.3 77.2 - - - +
294D LYS* 1.3 68.4 + - - -
296D ALA* 3.1 7.9 + - - +
297D ASP* 2.8 34.8 + - - +
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Residues in contact with LYS 294 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272B VAL* 4.3 22.6 - - + +
275B GLN* 2.7 32.8 + - - +
8D CA 3.3 20.9 - - - -
290D TRP* 3.1 63.7 + - + +
291D TYR* 3.7 8.3 - - + +
293D SER* 1.3 77.1 + - - +
295D PHE* 1.3 65.7 + - - +
297D ASP* 3.3 19.9 + - - +
298D LEU* 3.0 32.5 + - + +
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Residues in contact with PHE 295 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269A LEU* 3.4 48.0 - - + -
270A ARG* 4.6 6.5 - - + -
273A ARG* 3.4 42.8 - - + +
291D TYR 2.8 18.5 + - - +
292D LYS* 3.6 8.7 - - - +
294D LYS* 1.3 76.3 - - - +
296D ALA* 1.3 58.9 + - - +
298D LEU* 4.0 5.3 - - - +
299D SER* 2.9 49.9 + - - -
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Residues in contact with ALA 296 (chain D).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
292D LYS 2.9 15.2 + - - +
293D SER* 3.2 13.0 - - - +
295D PHE* 1.3 76.9 - - - +
297D ASP* 1.3 67.0 + - - +
299D SER* 3.2 7.1 + - - -
300D GLU* 3.0 39.0 + - - +
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Residues in contact with ASP 297 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268B ALA* 5.8 2.2 - - + -
271B ASP* 5.5 1.0 - - - +
272B VAL* 5.0 8.5 - - + +
275B GLN* 4.9 6.4 + - - -
9D CA 3.7 18.3 - - - -
293D SER* 2.8 21.0 + - - +
294D LYS* 3.4 28.2 + - - +
296D ALA* 1.3 75.8 - - - +
298D LEU* 1.3 65.1 + - + +
300D GLU* 3.2 14.0 + - - +
301D ALA* 3.1 22.0 + - - +
304D ARG* 4.8 1.4 + - - -
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Residues in contact with LEU 298 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A LEU* 5.2 3.6 - - + +
269A LEU* 3.6 34.3 - - + +
268B ALA* 3.6 22.9 - - + +
269B LEU* 4.3 16.4 - - + -
272B VAL* 3.6 35.4 - - + -
295C PHE* 6.2 0.7 - - + -
298C LEU* 4.4 14.4 - - + -
294D LYS* 3.0 19.8 + - + +
295D PHE* 4.0 4.3 - - - +
297D ASP* 1.3 78.0 - - + +
299D SER* 1.3 63.9 + - - +
301D ALA* 3.2 5.8 + - - +
302D ALA* 2.9 24.9 + - - +
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Residues in contact with SER 299 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266A THR* 5.2 0.6 + - - -
269A LEU* 3.6 10.9 - - - +
295D PHE* 2.9 48.8 + - - -
296D ALA* 3.5 7.4 - - - -
298D LEU* 1.3 76.1 - - - +
300D GLU* 1.3 58.1 + - - +
302D ALA* 3.4 2.6 + - - +
303D ASN* 3.0 41.4 + - - +
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Residues in contact with GLU 300 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296D ALA* 3.0 28.8 + - - +
297D ASP* 3.5 15.3 - - - +
299D SER* 1.3 75.8 - - - +
301D ALA* 1.3 64.9 + - - +
303D ASN* 3.3 10.3 + - - +
304D ARG* 3.0 42.2 + - - +
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Residues in contact with ALA 301 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A LEU* 5.9 0.9 - - + -
264B ASP* 4.4 6.0 - - - +
265B LEU* 3.6 17.0 - - + +
268B ALA* 3.8 28.3 - - + -
297D ASP 3.1 12.1 + - - +
298D LEU* 3.2 8.7 + - + +
300D GLU* 1.3 77.0 - - - +
302D ALA* 1.3 62.2 + - - +
304D ARG* 3.5 28.1 + - - +
305D ASN* 3.1 16.1 + - - +
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Residues in contact with ALA 302 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265A LEU* 3.9 33.1 - - + +
266A THR* 3.9 17.0 - - - +
269A LEU* 4.2 8.5 - - + -
265B LEU* 4.3 2.9 - - - +
305C ASN* 5.8 0.2 - - - +
298D LEU 2.9 16.7 + - - +
299D SER* 3.7 4.5 - - - +
301D ALA* 1.3 74.5 - - - +
303D ASN* 1.3 53.8 + - - +
305D ASN* 2.8 6.3 + - - +
306D ASN* 2.7 40.7 + - - +
----------------------------------------------------------
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Residues in contact with ASN 303 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
266A THR* 3.8 14.7 + - - +
299D SER* 3.0 31.0 + - - +
300D GLU* 3.7 8.8 - - - +
302D ALA* 1.3 75.0 - - - +
304D ARG* 1.3 53.4 + - + +
306D ASN* 3.1 11.5 + - - +
307D ASP* 2.8 47.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 304 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264B ASP* 2.9 40.4 + - - +
268B ALA* 5.8 0.2 - - - +
297D ASP 4.8 1.2 + - - -
300D GLU* 3.0 31.0 + - - +
301D ALA* 3.5 29.7 - - - +
303D ASN* 1.3 76.4 - - + +
305D ASN* 1.3 58.7 + - - +
307D ASP* 3.6 10.5 + - - +
308D ALA* 3.0 27.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN 305 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264B ASP 5.7 0.9 + - - -
265B LEU* 3.0 47.3 - - + +
305C ASN* 4.0 25.0 + - - +
306C ASN* 3.9 8.3 + - - -
309C LEU* 4.2 16.7 - - - +
301D ALA 3.1 4.6 + - - -
302D ALA* 2.8 9.9 + - - +
304D ARG* 1.3 74.6 - - - +
306D ASN* 1.3 59.0 + - - +
308D ALA* 3.1 7.3 + - - +
309D LEU* 2.8 37.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN 306 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
264A ASP* 5.0 4.7 + - - +
266A THR* 3.4 28.0 + - - +
305C ASN* 4.2 17.5 + - - -
302D ALA* 2.7 23.0 + - - +
303D ASN* 3.4 15.3 + - - +
305D ASN* 1.3 72.0 + - - +
307D ASP* 1.3 59.8 + - - +
309D LEU* 3.0 9.5 + - - +
310D ARG* 2.7 37.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 307 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303D ASN* 2.8 32.1 + - - +
304D ARG* 3.7 10.5 - - - +
306D ASN* 1.3 73.9 - - - +
308D ALA* 1.3 56.5 + - - +
310D ARG* 3.5 25.5 + - - +
311D GLN* 3.0 32.1 + - - +
----------------------------------------------------------
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Residues in contact with ALA 308 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309C LEU* 3.5 27.8 - - + +
313C LYS* 5.7 1.4 + - - -
304D ARG 3.0 18.6 + - - +
305D ASN* 3.3 9.2 - - - +
306D ASN 3.1 0.2 - - - -
307D ASP* 1.3 78.1 - - - +
309D LEU* 1.3 60.1 + - - +
311D GLN* 3.6 11.4 + - - +
312D ALA* 3.1 18.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 309 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305C ASN* 5.4 2.2 - - + +
308C ALA* 3.8 23.3 - - + +
309C LEU* 3.6 38.1 - - + +
312C ALA* 3.9 11.4 - - + -
305D ASN* 2.8 22.5 + - - +
306D ASN* 3.0 11.0 + - - +
308D ALA* 1.3 70.0 - - - +
310D ARG* 1.3 67.1 + - - +
311D GLN 3.0 2.1 + - - -
312D ALA* 3.1 3.6 + - - +
313D LYS* 3.0 35.8 + - + +
----------------------------------------------------------
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Residues in contact with ARG 310 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
306D ASN 2.7 20.4 + - - +
307D ASP* 3.8 27.7 + - - +
309D LEU* 1.3 74.8 - - - +
311D GLN* 1.3 63.7 + - - +
313D LYS* 3.6 8.7 - - - +
314D GLN* 3.1 61.6 + - + +
----------------------------------------------------------
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Residues in contact with GLN 311 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307D ASP 3.0 19.2 + - - +
308D ALA* 3.7 10.1 - - - +
310D ARG* 1.3 79.5 - - - +
312D ALA* 1.3 60.6 + - - +
313D LYS 3.0 1.6 - - - -
314D GLN* 3.0 14.1 + - + +
315D GLU* 2.9 42.0 + - + +
----------------------------------------------------------
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Residues in contact with ALA 312 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
309C LEU* 4.1 14.8 - - + -
312C ALA* 4.1 21.0 - - + +
313C LYS* 4.2 18.4 - - + +
316C SER* 4.5 3.9 - - - -
308D ALA 3.1 14.0 + - - +
309D LEU 3.1 5.2 + - - +
311D GLN* 1.3 79.4 - - - +
313D LYS* 1.3 60.2 + - - +
315D GLU* 3.6 10.7 + - - +
316D SER* 3.2 21.8 + - - -
----------------------------------------------------------
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Residues in contact with LYS 313 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312C ALA* 4.5 18.4 - - + +
315C GLU* 3.9 24.2 + - - +
309D LEU* 3.0 26.5 + - + +
310D ARG* 3.6 12.8 - - - +
312D ALA* 1.3 74.0 - - - +
314D GLN* 1.3 61.9 + - + +
315D GLU 3.1 1.3 - - - -
316D SER* 2.8 22.3 + - - -
317D THR* 3.1 21.2 + - + +
----------------------------------------------------------
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Residues in contact with GLN 314 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310D ARG* 3.1 46.8 + - + +
311D GLN* 3.0 13.2 + - + +
313D LYS* 1.3 79.7 - - + +
315D GLU* 1.3 57.3 + - - +
316D SER 3.2 0.2 - - - -
317D THR* 3.5 7.9 + - - -
318D GLU* 3.1 30.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 315 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316C SER* 3.6 10.3 + - - +
5D CA 3.9 17.2 - - - -
311D GLN* 2.9 30.5 + - + +
312D ALA* 3.8 10.7 - - - +
314D GLN* 1.3 76.2 - - - +
316D SER* 1.3 58.6 + - - +
318D GLU* 3.9 18.3 - - - +
319D TYR* 2.8 56.8 + - + -
----------------------------------------------------------
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Residues in contact with SER 316 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312C ALA 4.5 1.8 - - - -
315C GLU* 3.2 38.9 + - - +
316C SER* 4.4 11.0 - - - +
319C TYR* 3.4 19.9 - - - -
312D ALA 3.2 12.6 + - - -
313D LYS* 2.8 16.8 + - - -
315D GLU* 1.3 77.3 - - - +
317D THR* 1.3 61.8 + - - +
318D GLU 3.1 1.1 - - - -
319D TYR* 3.1 2.4 + - - +
320D ARG* 2.9 23.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 317 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
313D LYS* 3.1 12.6 + - + +
314D GLN* 3.5 12.8 + - - -
316D SER* 1.3 76.4 - - - +
318D GLU* 1.3 63.8 + - - +
320D ARG* 3.4 23.1 - - - +
321D ARG* 3.0 44.8 + - - +
----------------------------------------------------------
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Residues in contact with GLU 318 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314D GLN 3.1 19.7 + - - +
315D GLU* 3.9 21.9 - - - +
317D THR* 1.3 83.2 + - - +
319D TYR* 1.3 71.4 + - + +
320D ARG 3.3 0.2 + - - -
321D ARG* 3.6 7.7 + - - +
322D GLN* 3.5 17.3 + - - +
----------------------------------------------------------
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Residues in contact with TYR 319 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
316C SER* 3.9 12.8 - - - +
319C TYR* 3.4 19.8 - - + +
320C ARG* 3.3 60.0 - - + -
323C VAL* 4.3 4.9 - - + +
315D GLU* 2.8 47.3 + - + +
316D SER 3.1 7.2 + - - +
318D GLU* 1.3 91.1 - - + +
320D ARG* 1.3 61.6 + - - +
322D GLN* 3.4 25.0 - - - +
323D VAL* 3.2 23.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 320 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319C TYR* 3.2 37.9 - - + -
316D SER 2.9 12.5 + - - +
317D THR* 3.1 26.2 + - - +
319D TYR* 1.3 73.8 - - - +
321D ARG* 1.3 80.4 + - - +
322D GLN 3.1 1.3 - - - -
323D VAL* 2.9 25.4 - - + +
324D GLN* 3.0 45.0 + - + +
----------------------------------------------------------
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Residues in contact with ARG 321 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317D THR* 3.0 28.0 + - - +
318D GLU* 4.1 6.3 - - - +
320D ARG* 1.3 91.0 - - + +
322D GLN* 1.3 62.5 + - - +
324D GLN* 3.5 21.8 + - - +
325D SER* 3.0 23.6 + - - -
----------------------------------------------------------
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Residues in contact with GLN 322 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323C VAL* 3.1 40.5 - - + +
318D GLU 3.5 10.2 + - - +
319D TYR* 3.4 24.1 + - - +
320D ARG 3.1 0.6 - - - -
321D ARG* 1.3 79.6 - - - +
323D VAL* 1.3 57.7 + - - +
325D SER* 3.0 7.2 + - - -
326D LEU* 2.8 31.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 323 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319C TYR* 4.3 17.0 - - + -
322C GLN* 3.6 23.1 - - + +
323C VAL* 4.5 12.3 - - + -
326C LEU* 3.7 20.2 - - + -
319D TYR 3.2 12.3 + - - +
320D ARG* 2.9 27.1 - - + +
322D GLN* 1.3 74.5 - - - +
324D GLN* 1.3 61.0 + - + +
326D LEU* 4.2 7.0 - - - -
327D THR* 2.8 34.0 + - + +
----------------------------------------------------------
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Residues in contact with GLN 324 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320D ARG* 3.0 49.1 + - + +
321D ARG* 3.5 27.4 + - - +
323D VAL* 1.3 78.2 - - + +
325D SER* 1.3 59.5 + - - +
327D THR* 3.1 22.8 - - - +
328D CYS* 3.4 11.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 325 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321D ARG 3.0 13.0 + - - -
322D GLN* 3.0 10.6 + - - -
324D GLN* 1.3 76.8 - - - +
326D LEU* 1.3 59.5 + - - +
328D CYS* 3.2 7.5 + - - +
329D GLU* 2.9 28.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 326 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
323C VAL* 3.3 37.7 - - + +
326C LEU* 3.5 25.1 - - + -
327C THR* 3.4 13.2 - - - +
330C VAL* 4.1 12.8 - - + -
322D GLN* 2.8 22.9 + - + +
323D VAL* 3.9 4.5 - - - +
325D SER* 1.3 72.4 - - - +
327D THR* 1.3 59.5 + - - +
329D GLU* 3.1 29.4 + - - +
330D VAL* 2.8 34.4 + - - +
----------------------------------------------------------
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Residues in contact with THR 327 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326C LEU* 3.9 18.5 - - - +
323D VAL* 2.8 28.7 + - + +
324D GLN* 3.1 20.2 - - - +
326D LEU* 1.3 72.9 - - - +
328D CYS* 1.3 57.7 + - + +
330D VAL* 3.8 6.6 - - - +
331D ASP* 3.1 38.2 + - - +
----------------------------------------------------------
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Residues in contact with CYS 328 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324D GLN 3.4 11.9 - - - +
325D SER* 3.2 11.2 + - - +
326D LEU 3.1 0.6 - - - -
327D THR* 1.3 81.4 - - + +
329D GLU* 1.3 62.8 + - - +
331D ASP* 3.4 6.6 + - - +
332D ALA* 3.1 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 329 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330C VAL* 4.1 18.3 - - - +
325D SER* 2.9 13.9 + - - +
326D LEU* 3.1 30.2 + - - +
328D CYS* 1.3 77.1 - - - +
330D VAL* 1.3 58.7 + - - +
332D ALA* 4.6 2.4 - - - +
333D LEU* 2.9 36.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 330 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
326C LEU* 4.4 13.5 - - + +
329C GLU* 3.1 32.1 - - - +
330C VAL* 3.5 33.2 - - + -
333C LEU* 3.8 8.7 - - + +
326D LEU* 2.8 22.4 + - + +
327D THR* 3.8 7.4 - - - +
328D CYS 3.2 0.2 - - - -
329D GLU* 1.3 77.6 - - - +
331D ASP* 1.3 70.6 + - - +
333D LEU* 3.1 21.8 - - - +
----------------------------------------------------------
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Residues in contact with ASP 331 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
327D THR* 3.1 28.8 + - - +
328D CYS* 3.7 7.8 - - - +
329D GLU 3.3 0.2 - - - -
330D VAL* 1.3 81.5 - - - +
332D ALA* 1.3 67.8 + - - +
333D LEU 3.0 7.3 + - - +
334D LYS 3.9 8.5 - - - -
----------------------------------------------------------
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Residues in contact with ALA 332 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328D CYS* 3.1 17.6 + - - +
329D GLU* 4.6 2.7 - - - +
331D ASP* 1.3 79.4 - - - +
333D LEU* 1.3 55.9 + - - +
334D LYS* 3.0 10.0 + - - -
----------------------------------------------------------
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Residues in contact with LEU 333 (chain D).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
330C VAL* 4.3 19.7 - - + +
333C LEU* 3.5 34.9 - - + +
329D GLU* 2.9 29.1 + - + +
330D VAL* 3.1 16.1 - - - +
331D ASP 3.0 1.4 + - - -
332D ALA* 1.3 72.2 - - - +
334D LYS* 1.3 87.3 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il