Contacts of the helix formed by residues 267 - 328 (chain C) in PDB entry 3M0A
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 267 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269B LEU* 5.5 3.3 - - - +
268C LEU* 1.3 64.3 + - + +
269C LEU* 3.3 11.7 - - - +
270C GLN* 2.8 18.0 + - - +
271C ARG* 2.6 72.6 + - - +
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Residues in contact with LEU 268 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268A LEU* 3.7 27.6 - - + +
268B LEU* 3.9 24.2 - - + +
269B LEU* 4.1 23.6 - - + -
272B CYS* 3.4 34.5 - - + -
267C GLU* 1.3 78.3 - - + +
269C LEU* 1.3 62.3 + - - +
270C GLN 2.9 4.8 + - - -
271C ARG* 3.8 26.9 - - - +
272C CYS* 3.0 28.0 + - + +
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Residues in contact with LEU 269 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268A LEU* 3.7 21.0 - - + +
271A ARG* 4.3 13.9 + - - +
267C GLU 4.3 10.1 - - - +
268C LEU* 1.3 76.6 - - - +
270C GLN* 1.3 56.2 + - + +
272C CYS* 4.8 1.1 - - - +
273C GLU* 4.0 16.1 + - - +
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Residues in contact with GLN 270 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
267C GLU* 2.8 22.6 + - - +
268C LEU 2.9 1.0 - - - -
269C LEU* 1.3 78.7 - - + +
271C ARG* 1.3 54.0 + - - +
272C CYS 3.0 5.6 - - - -
273C GLU* 3.7 6.8 - - - +
274C SER* 3.2 24.9 + - - -
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Residues in contact with ARG 271 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
269B LEU* 4.4 17.6 + - - +
272B CYS* 4.6 3.7 - - - -
273B GLU* 4.4 21.2 - - - +
276B GLU* 3.3 42.2 + - - +
267C GLU* 2.6 54.4 + - - +
268C LEU* 3.8 28.3 + - + +
270C GLN* 1.3 72.0 - - - +
272C CYS* 1.3 58.8 + - + +
274C SER* 3.3 8.5 - - - -
275C LEU* 3.0 32.4 + - - +
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Residues in contact with CYS 272 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
268A LEU* 4.9 13.9 - - - -
271A ARG* 4.3 25.6 - - - -
272A CYS* 5.1 4.0 - - - -
275A LEU* 3.8 17.4 - - - +
272B CYS* 5.0 11.2 - - - -
275B LEU* 6.2 0.2 - - - -
268C LEU* 3.0 22.4 - - + +
269C LEU 4.8 0.9 - - - -
271C ARG* 1.3 79.2 - - + +
273C GLU* 1.3 59.7 + - - +
275C LEU* 3.3 12.3 + - + +
276C GLU* 3.0 34.0 + - - +
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Residues in contact with GLU 273 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271A ARG* 4.4 11.6 - - - +
269C LEU 4.0 16.1 + - - +
270C GLN* 3.7 9.4 + - - +
272C CYS* 1.3 76.6 - - - +
274C SER* 1.3 61.2 + - - +
276C GLU* 3.2 17.2 + - - +
277C LYS* 3.4 34.2 + - - +
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Residues in contact with SER 274 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
270C GLN 3.2 15.8 + - - -
271C ARG* 3.3 14.4 - - - -
273C GLU* 1.3 75.8 - - - +
275C LEU* 1.3 67.5 + - - -
277C LYS* 3.0 12.9 + - - +
278C LYS* 3.0 26.0 + - - +
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Residues in contact with LEU 275 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275A LEU* 3.5 17.0 - - + -
272B CYS* 4.3 7.9 - - - +
275B LEU* 3.4 38.8 - - + +
276B GLU* 3.7 25.6 - - + +
279B THR* 4.1 24.7 - - + +
271C ARG 3.0 23.0 + - - +
272C CYS* 3.3 12.5 + - - +
274C SER* 1.3 74.0 - - - +
276C GLU* 1.3 59.9 + - - +
278C LYS* 4.2 3.1 - - + +
279C THR* 2.9 36.2 + - - +
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Residues in contact with GLU 276 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
271A ARG* 3.0 46.4 + - - +
274A SER* 5.3 1.4 + - - -
275A LEU* 3.7 22.7 - - + +
278A LYS* 5.7 6.5 - - - -
272C CYS* 3.0 25.7 + - - +
273C GLU* 3.2 20.1 + - - +
274C SER 3.2 0.4 - - - -
275C LEU* 1.3 76.8 - - - +
277C LYS* 1.3 56.2 + - + +
279C THR* 3.8 3.8 - - - +
280C ALA* 3.2 27.0 + - - +
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Residues in contact with LYS 277 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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273C GLU* 3.4 21.0 + - - +
274C SER* 3.0 13.9 + - - +
276C GLU* 1.3 76.3 - - + +
278C LYS* 1.4 66.4 + - - +
279C THR 3.2 0.9 - - - -
280C ALA* 3.4 5.4 + - - +
281C THR* 3.1 27.9 + - - -
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Residues in contact with LYS 278 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279B THR* 4.5 11.0 - - + -
274C SER* 3.0 16.3 + - - +
275C LEU* 4.2 3.4 - - + +
277C LYS* 1.4 74.4 - - - +
279C THR* 1.3 63.9 + - - +
281C THR* 3.2 9.8 + - - -
282C PHE* 3.1 44.3 + - + -
31D TYR* 5.8 4.0 - - - +
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Residues in contact with THR 279 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
275A LEU* 4.9 8.1 - - + +
278A LYS* 4.3 32.1 - - + -
279A THR* 4.2 12.1 + - - +
282A PHE* 5.6 3.4 - - + -
279B THR* 3.8 19.2 + - - +
282B PHE* 4.9 6.6 - - + -
275C LEU* 2.9 23.2 + - - +
276C GLU* 3.8 7.4 - - - +
278C LYS* 1.3 75.5 - - - +
280C ALA* 1.3 62.4 + - - +
282C PHE* 3.0 13.1 + - - +
283C GLU* 2.8 30.4 + - + +
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Residues in contact with ALA 280 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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278A LYS* 6.3 0.7 - - - -
276C GLU 3.2 19.2 + - - +
277C LYS* 3.4 6.0 + - - +
279C THR* 1.3 78.5 - - - +
281C THR* 1.3 59.4 + - - +
283C GLU* 3.2 7.0 + - - +
284C ASN* 2.7 42.3 + - - +
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Residues in contact with THR 281 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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277C LYS 3.1 13.2 + - - -
278C LYS* 3.4 11.3 - - - -
279C THR 3.1 0.2 - - - -
280C ALA* 1.3 78.8 - - - +
282C PHE* 1.3 63.9 + - + +
284C ASN* 3.1 7.1 + - - +
285C ILE* 2.7 45.2 + - + +
26D LEU* 6.2 0.9 - - + -
31D TYR* 3.7 38.0 - - + -
34D SER* 4.1 17.0 - - - +
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Residues in contact with PHE 282 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282A PHE* 3.6 22.7 - + + -
279B THR* 3.8 12.8 - - + -
282B PHE* 3.7 30.7 - + + -
283B GLU* 3.9 24.7 - - + -
286B VAL* 4.3 17.3 - - + -
278C LYS* 3.1 37.7 + - + -
279C THR* 3.0 10.4 + - - +
281C THR* 1.3 80.8 - - + +
283C GLU* 1.3 64.4 + - - +
285C ILE* 3.0 9.0 + - + +
286C VAL* 2.9 25.5 + - - +
26D LEU* 4.0 24.5 - - + -
31D TYR* 6.1 1.6 - + - -
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Residues in contact with GLU 283 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
278A LYS* 6.5 1.3 - - + -
282A PHE* 4.1 19.8 - - + -
279C THR* 2.8 19.2 + - + +
280C ALA* 3.7 9.2 - - - +
282C PHE* 1.3 71.4 - - - +
284C ASN* 1.3 66.4 + - - +
286C VAL* 3.3 2.5 + - - +
287C CYS* 3.0 24.3 + - - +
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Residues in contact with ASN 284 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280C ALA* 2.7 35.1 + - - +
281C THR* 3.6 4.3 - - - +
283C GLU* 1.3 76.7 - - - +
285C ILE* 1.3 61.8 + - - +
287C CYS* 3.3 11.3 + - - +
288C VAL* 3.4 16.8 + - - +
34D SER* 3.7 23.1 - - - +
37D SER* 2.7 29.9 + - - +
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Residues in contact with ILE 285 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
286B VAL* 3.8 26.5 - - + -
290B ASN* 5.9 0.2 - - + -
281C THR* 2.7 36.0 + - + +
282C PHE* 3.7 5.4 - - + +
284C ASN* 1.3 73.2 - - - +
286C VAL* 1.3 58.7 + - - +
288C VAL* 3.1 20.9 + - - +
289C LEU* 3.2 28.3 + - + +
26D LEU* 4.8 9.4 - - + -
30D LEU* 3.7 33.7 - - + +
33D MET* 3.8 16.8 - - + -
34D SER* 3.6 22.2 - - - +
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Residues in contact with VAL 286 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
282A PHE* 3.6 28.5 - - + -
285A ILE* 4.2 19.7 - - + -
286A VAL* 4.2 10.8 - - + -
289A LEU* 3.8 21.6 - - + +
286B VAL* 3.7 23.3 - - + -
289B LEU* 4.3 11.9 - - + -
282C PHE 2.9 9.7 + - - +
283C GLU* 3.9 3.8 - - - +
285C ILE* 1.3 74.1 - - - +
287C CYS* 1.3 61.7 + - - +
289C LEU* 3.3 9.3 + - + +
290C ASN* 2.9 28.2 + - - +
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Residues in contact with CYS 287 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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283C GLU 3.0 16.7 + - - +
284C ASN* 3.5 7.2 - - - +
285C ILE 3.2 0.2 - - - -
286C VAL* 1.3 79.9 - - - +
288C VAL* 1.3 59.9 + - - +
290C ASN* 3.6 9.6 - - - +
291C ARG* 3.4 28.4 + - - +
37D SER* 3.8 33.9 - - - -
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Residues in contact with VAL 288 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284C ASN 3.4 9.6 + - - +
285C ILE 3.1 8.1 + - - +
287C CYS* 1.3 74.1 - - - +
289C LEU* 1.3 62.2 + - - +
291C ARG* 3.2 9.7 + - - +
292C GLU* 2.9 29.5 + - + +
295C ARG* 5.6 0.2 - - - +
33D MET* 3.6 42.0 - - + +
36D TYR* 3.7 7.4 - - + +
37D SER* 3.6 25.1 - - - +
47D GLU* 3.8 32.3 - - + +
48D ARG 5.4 0.2 - - - +
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Residues in contact with LEU 289 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A LEU* 4.2 11.9 - - + -
286B VAL* 4.9 2.0 - - + +
289B LEU* 4.6 8.1 - - + -
290B ASN* 3.8 26.9 - - + +
293B VAL* 4.1 11.9 - - + -
285C ILE* 3.2 32.3 + - + +
286C VAL* 3.3 18.1 + - + +
288C VAL* 1.3 72.9 - - - +
290C ASN* 1.3 68.3 + - - +
292C GLU* 3.0 11.2 + - - +
293C VAL* 2.8 28.5 + - - +
33D MET* 3.6 15.3 - - + -
48D ARG* 3.5 28.5 - - - +
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Residues in contact with ASN 290 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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285A ILE* 6.1 2.2 - - - +
288A VAL* 6.2 1.8 - - - +
289A LEU* 3.7 20.8 - - + +
292A GLU* 5.5 1.4 - - - +
286C VAL 2.9 15.6 + - - +
287C CYS* 3.6 12.3 - - - +
289C LEU* 1.3 77.0 - - - +
291C ARG* 1.3 62.4 + - + +
293C VAL* 3.2 7.3 - - - +
294C GLU* 3.1 41.1 + - - +
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Residues in contact with ARG 291 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287C CYS* 3.4 15.6 + - - +
288C VAL* 3.2 13.5 + - - +
289C LEU 3.1 0.6 - - - -
290C ASN* 1.3 76.8 - - + +
292C GLU* 1.3 67.2 + - - +
294C GLU* 3.2 6.0 + - - +
295C ARG* 3.1 33.7 + - - +
36D TYR 3.1 22.6 + - - -
37D SER* 3.4 21.8 + - - +
39D PHE* 3.6 21.5 + - - +
40D PRO 5.8 0.2 + - - -
41D ALA* 5.3 15.3 - - - +
47D GLU* 3.2 35.1 + - - +
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Residues in contact with GLU 292 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293B VAL* 3.7 14.3 - - + +
294B GLU* 4.9 0.2 - - - -
297B ALA* 4.1 14.4 - - + +
288C VAL* 2.9 16.1 + - + +
289C LEU* 3.4 17.5 - - - +
291C ARG* 1.3 75.4 - - - +
293C VAL* 1.3 64.2 + - - +
295C ARG* 3.1 27.4 + - - +
296C VAL* 3.0 33.1 + - + +
33D MET* 5.1 2.1 - - - +
46D SER* 4.5 6.0 + - - -
48D ARG* 2.9 57.3 + - - +
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Residues in contact with VAL 293 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
289A LEU* 4.9 6.3 - - + +
292A GLU* 4.3 15.3 - - + +
293A VAL* 3.7 18.6 - - + -
296A VAL* 4.3 11.0 - - + +
293B VAL* 3.5 35.0 - - + -
296B VAL* 6.4 1.3 - - + -
289C LEU 2.8 18.5 + - - +
290C ASN* 3.2 24.5 - - - +
292C GLU* 1.3 73.2 - - - +
294C GLU* 1.3 72.9 + - - +
296C VAL* 3.2 10.2 + - - +
297C ALA* 2.8 26.7 + - - +
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Residues in contact with GLU 294 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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292A GLU* 3.3 30.3 - - - +
295A ARG* 4.0 7.1 + - - -
290C ASN* 3.1 29.3 + - - +
291C ARG* 3.2 5.7 + - - +
293C VAL* 1.3 90.9 - - - +
295C ARG* 1.3 65.9 + - - +
297C ALA* 3.5 9.7 + - - +
298C MET* 3.3 24.2 + - - +
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Residues in contact with ARG 295 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288C VAL* 5.6 0.2 - - - +
291C ARG* 3.1 19.1 + - + +
292C GLU* 3.5 36.1 - - - +
294C GLU* 1.3 71.9 - - - +
296C VAL* 1.3 68.2 + - + +
298C MET* 3.0 36.0 + - + +
299C THR* 3.2 14.1 + - - -
43D VAL* 5.4 9.3 + - - +
45D VAL 5.1 2.6 + - - -
46D SER* 3.7 22.4 + - - +
47D GLU* 2.7 50.6 + - - +
48D ARG 5.4 0.2 - - - +
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Residues in contact with VAL 296 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A VAL* 3.9 18.2 - - + -
293B VAL* 5.3 1.8 - - + +
296B VAL* 4.0 12.8 - - + +
297B ALA* 3.5 28.9 - - + -
300B ALA* 3.6 26.0 - - + -
292C GLU* 3.0 22.6 + - + +
293C VAL* 3.4 10.8 - - - +
295C ARG* 1.3 77.3 - - + +
297C ALA* 1.3 62.1 + - - +
299C THR* 3.1 10.7 - - - -
300C ALA* 3.0 20.1 + - - +
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Residues in contact with ALA 297 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
295A ARG* 4.6 14.1 - - - +
296A VAL* 3.6 26.6 - - + +
293C VAL 2.8 13.0 + - - +
294C GLU* 3.5 20.8 + - - +
295C ARG 3.2 0.4 - - - -
296C VAL* 1.3 73.0 - - - +
298C MET* 1.3 55.9 + - + +
300C ALA* 3.4 5.7 + - - +
301C GLU* 2.9 31.5 + - - +
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Residues in contact with MET 298 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
294C GLU 3.3 9.9 + - - +
295C ARG* 3.0 37.3 + - + +
297C ALA* 1.3 72.8 - - - +
299C THR* 1.3 60.7 + - - +
301C GLU* 4.0 4.4 - - - +
302C ALA* 2.9 32.7 + - - +
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Residues in contact with THR 299 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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300B ALA* 3.5 34.8 - - + +
301B GLU* 5.1 4.9 - - + +
304B SER* 3.9 14.3 + - - +
295C ARG 3.2 8.4 + - - -
296C VAL* 3.1 14.5 + - - -
298C MET* 1.3 77.5 - - - +
300C ALA* 1.3 68.7 + - - +
302C ALA* 3.9 3.7 - - - +
303C CYS* 3.0 27.5 + - + +
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Residues in contact with ALA 300 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
296A VAL* 4.9 6.7 - - + -
299A THR* 3.3 33.9 - - - +
300A ALA* 4.6 5.6 - - + +
303A CYS* 4.0 4.7 - - - -
300B ALA* 5.1 7.6 - - + -
303B CYS* 6.6 0.2 - - - -
296C VAL 3.0 11.9 + - - +
297C ALA* 3.9 5.8 - - - +
299C THR* 1.3 82.3 - - - +
301C GLU* 1.3 52.3 + - - +
303C CYS* 3.6 4.6 - - - +
304C SER* 2.8 37.9 + - - -
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Residues in contact with GLU 301 (chain C).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A THR* 5.0 2.0 + - - -
297C ALA 2.9 19.6 + - - +
298C MET* 4.0 4.5 - - - +
300C ALA* 1.3 72.4 - - - +
302C ALA* 1.3 66.8 + - - +
303C CYS 3.1 0.2 + - - -
304C SER* 3.1 5.8 + - - -
305C ARG* 3.0 46.0 + - - +
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Residues in contact with ALA 302 (chain C).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
298C MET 2.9 24.0 + - - +
299C THR* 3.9 4.7 - - - +
301C GLU* 1.3 70.8 - - - +
303C CYS* 1.3 56.3 + - - +
305C ARG* 4.1 5.1 - - - +
306C GLN* 3.2 29.1 + - - +
----------------------------------------------------------
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Residues in contact with CYS 303 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303A CYS* 4.0 19.8 - - - +
303B CYS* 3.7 26.7 - - - -
304B SER* 3.6 20.2 - - - +
307B HIS* 4.1 22.2 + - - +
299C THR* 3.0 20.1 + - + +
300C ALA* 3.7 3.8 - - - +
302C ALA* 1.3 76.0 - - - +
304C SER* 1.3 65.1 + - - +
306C GLN* 4.0 3.8 - - - -
307C HIS* 3.6 18.7 + - - +
----------------------------------------------------------
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Residues in contact with SER 304 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299A THR* 5.2 6.3 + - - -
302A ALA* 5.2 5.0 - - - +
303A CYS* 3.4 22.6 - - - -
300C ALA 2.8 22.4 + - - -
301C GLU* 3.1 5.6 + - - -
303C CYS* 1.3 76.7 - - - +
305C ARG* 1.3 66.6 - - - +
306C GLN 3.5 0.3 + - - -
307C HIS* 3.6 21.5 + - - +
308C ARG* 3.7 5.0 + - - +
----------------------------------------------------------
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Residues in contact with ARG 305 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301C GLU* 3.0 33.5 + - - +
302C ALA* 4.5 4.0 - - - +
304C SER* 1.3 78.7 - - - +
306C GLN* 1.4 58.9 + - - +
308C ARG* 3.1 25.3 - - + +
309C LEU 4.4 0.7 + - - -
----------------------------------------------------------
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Residues in contact with GLN 306 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
307B HIS* 3.4 21.8 - - + +
302C ALA 3.2 20.2 + - - +
303C CYS* 4.2 1.8 - - - +
304C SER 3.3 0.4 - - - -
305C ARG* 1.4 72.3 - - - +
307C HIS* 1.3 54.9 + - - +
308C ARG 3.0 1.6 - - - -
309C LEU* 2.8 37.4 + - - +
310C ASP* 3.3 3.5 + - - +
----------------------------------------------------------
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Residues in contact with HIS 307 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
303A CYS* 6.6 0.2 - - + -
306A GLN* 3.8 41.2 + - + +
309A LEU* 6.4 0.2 - - + -
310A ASP* 3.1 28.3 + - - -
307B HIS* 2.9 34.0 + - + +
303C CYS 3.6 6.4 + - - +
304C SER* 3.7 15.5 - - - +
306C GLN* 1.3 71.8 - - - +
308C ARG* 1.3 68.6 + - + +
310C ASP* 3.1 5.1 + - - +
311C GLN* 2.9 40.2 + - + +
----------------------------------------------------------
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Residues in contact with ARG 308 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
304C SER 3.7 2.7 + - - +
305C ARG* 3.1 25.5 + - - +
306C GLN 3.0 0.4 - - - -
307C HIS* 1.3 86.3 - - + +
309C LEU* 1.3 61.9 + - - +
311C GLN* 3.7 9.1 + - - +
312C ASP* 3.8 13.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 309 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
305C ARG 4.4 0.4 + - - -
306C GLN* 2.8 17.9 + - - +
308C ARG* 1.3 72.0 - - - +
310C ASP* 1.3 56.2 + - - +
312C ASP* 2.6 37.0 + - - +
313C LYS* 3.2 19.5 + - + +
----------------------------------------------------------
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Residues in contact with ASP 310 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A ASP* 4.8 9.5 - - - +
307B HIS* 3.3 31.1 + - + +
310B ASP* 3.7 16.7 - - + +
311B GLN* 3.8 18.4 + - - +
314B ILE* 3.6 23.3 - - + +
306C GLN 3.3 3.0 + - - +
307C HIS* 3.1 18.3 + - + +
309C LEU* 1.3 78.2 - - - +
311C GLN* 1.3 57.1 + - - +
312C ASP 3.3 0.2 - - - -
313C LYS* 4.1 15.9 + - - +
314C ILE* 3.4 22.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 311 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A ASP* 5.2 4.5 - - - +
307C HIS* 2.9 35.8 + - + +
308C ARG* 4.0 6.7 - - - +
309C LEU 2.9 2.2 + - - -
310C ASP* 1.3 70.3 - - - +
312C ASP* 1.3 62.8 + - - +
314C ILE* 4.1 6.3 - - - +
315C GLU* 3.3 23.2 + - - +
----------------------------------------------------------
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Residues in contact with ASP 312 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
308C ARG 3.8 8.4 + - - +
309C LEU* 2.6 23.1 + - - +
311C GLN* 1.3 71.8 - - - +
313C LYS* 1.3 65.0 + - + +
314C ILE 3.1 1.3 - - - -
315C GLU* 3.1 6.7 + - - +
316C ALA* 2.9 24.3 + - - +
----------------------------------------------------------
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Residues in contact with LYS 313 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314B ILE* 4.5 25.7 - - + +
309C LEU* 3.2 20.6 + - + +
310C ASP* 4.0 18.6 + - - +
311C GLN 3.6 0.2 - - - -
312C ASP* 1.3 77.1 - - + +
314C ILE* 1.3 61.0 + - - +
316C ALA* 3.4 7.0 + - - +
317C LEU* 3.1 30.2 + - + +
----------------------------------------------------------
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Residues in contact with ILE 314 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
310A ASP* 5.6 5.8 - - - +
313A LYS* 5.7 9.2 - - + -
314A ILE* 5.6 5.8 - - + -
317A LEU* 4.6 5.4 - - + +
314B ILE* 4.7 10.6 - - + +
310C ASP 3.4 19.2 + - - +
311C GLN* 4.1 7.2 - - - +
312C ASP 3.1 0.4 - - - -
313C LYS* 1.3 78.5 - - - +
315C GLU* 1.3 61.1 + - - +
317C LEU* 3.4 11.7 - - + +
318C SER* 3.1 24.8 + - - -
----------------------------------------------------------
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Residues in contact with GLU 315 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
311C GLN 3.3 15.7 + - - +
312C ASP* 3.1 9.4 + - - +
314C ILE* 1.3 77.3 - - - +
316C ALA* 1.3 62.1 + - - +
318C SER* 3.3 8.3 + - - -
319C SER* 3.1 24.3 + - - -
----------------------------------------------------------
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Residues in contact with ALA 316 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
312C ASP 2.9 12.5 + - - +
313C LYS* 3.6 12.6 - - - +
314C ILE 3.4 0.2 - - - -
315C GLU* 1.3 72.8 - - - +
317C LEU* 1.3 53.9 - - + +
319C SER* 3.4 7.3 + - - -
320C LYS* 2.8 51.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 317 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
314A ILE* 5.8 0.7 - - + -
317A LEU* 4.2 7.4 - - + -
314B ILE* 4.2 16.8 - - + +
317B LEU* 3.2 35.7 - - + -
318B SER* 3.7 37.2 - - - +
321B VAL* 4.4 16.6 - - + -
313C LYS* 3.1 18.2 + - + +
314C ILE* 3.4 14.1 - - - +
316C ALA* 1.3 73.2 - - + +
318C SER* 1.3 50.4 + - - +
319C SER 2.9 3.8 - - - -
320C LYS* 2.6 34.2 + - - +
321C VAL* 2.7 22.4 + - + +
----------------------------------------------------------
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Residues in contact with SER 318 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A LEU* 3.8 26.0 - - - +
314C ILE 3.1 10.0 + - - -
315C GLU* 3.3 12.8 + - - -
317C LEU* 1.3 78.0 - - - +
319C SER* 1.3 57.5 + - - +
321C VAL* 3.8 7.1 - - - +
322C GLN* 3.1 28.1 + - - +
----------------------------------------------------------
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Residues in contact with SER 319 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
315C GLU 3.1 11.7 + - - -
316C ALA* 3.4 12.3 - - - -
317C LEU 2.8 1.4 + - - -
318C SER* 1.3 79.9 + - - +
320C LYS* 1.3 65.2 + - - -
322C GLN* 3.5 5.2 + - - +
323C GLN* 3.2 21.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 320 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318B SER* 6.1 0.7 - - - -
321B VAL* 4.6 19.5 - - + -
325B GLU* 4.1 30.1 - - - +
316C ALA* 2.8 30.1 + - - +
317C LEU* 2.6 20.4 + - - +
319C SER* 1.3 71.5 - - - +
321C VAL* 1.3 56.0 + - + +
323C GLN* 3.3 6.9 + - - +
324C LEU* 2.9 32.0 + - + +
----------------------------------------------------------
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Residues in contact with VAL 321 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
317A LEU* 4.5 13.9 - - + -
320A LYS* 3.9 36.3 - - + -
321A VAL* 4.0 24.5 - - + -
324A LEU* 4.5 8.2 - - + +
317B LEU* 5.9 0.4 - - + -
321B VAL* 4.1 16.6 - - + -
317C LEU* 2.7 27.4 + - + +
318C SER* 4.1 8.5 - - - +
320C LYS* 1.3 72.3 - - - +
322C GLN* 1.3 53.0 + - - +
324C LEU* 3.7 7.8 - - + +
325C GLU* 2.8 35.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 322 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
318C SER 3.1 19.1 + - - +
319C SER* 4.0 4.7 - - - +
320C LYS 3.3 0.2 - - - -
321C VAL* 1.3 73.9 - - - +
323C GLN* 1.3 65.3 + - - +
325C GLU* 3.0 9.3 + - - +
326C ARG* 3.0 24.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 323 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319C SER 3.2 13.1 + - - +
320C LYS* 3.8 9.2 - - - +
322C GLN* 1.3 74.4 - - - +
324C LEU* 1.3 61.1 + - - +
326C ARG* 3.3 14.8 + - - +
327C SER* 3.3 18.4 + - - -
----------------------------------------------------------
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Residues in contact with LEU 324 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
321A VAL* 5.7 0.4 - - + -
324A LEU* 3.8 13.9 - - + -
321B VAL* 4.2 20.0 - - + +
324B LEU* 3.7 35.9 - - + +
325B GLU* 4.3 22.4 - - + +
328B ILE* 3.7 30.1 - - + -
320C LYS 2.9 18.0 + - - +
321C VAL* 3.7 9.6 - - + +
323C GLN* 1.3 75.4 - - - +
325C GLU* 1.3 61.9 + - - +
326C ARG 3.2 0.2 - - - -
327C SER* 3.7 2.9 + - - +
328C ILE* 3.2 39.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 325 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
320A LYS* 5.7 9.0 - - + -
324A LEU* 4.4 20.3 - - + +
321C VAL* 2.8 21.3 + - + +
322C GLN* 3.0 10.1 + - - +
324C LEU* 1.3 78.5 - - - +
326C ARG* 1.3 54.9 + - - +
327C SER 3.4 0.2 - - - -
328C ILE 3.3 20.8 - - - +
----------------------------------------------------------
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Residues in contact with ARG 326 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
322C GLN 3.0 13.4 + - - +
323C GLN* 3.3 8.3 + - - +
324C LEU 3.2 0.4 - - - -
325C GLU* 1.3 75.9 - - - +
327C SER* 1.3 64.1 + - - +
328C ILE 4.9 0.9 - - - -
----------------------------------------------------------
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Residues in contact with SER 327 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
328B ILE* 3.6 28.7 - - - +
323C GLN 3.3 14.8 + - - -
324C LEU* 3.7 2.8 + - - -
325C GLU 3.4 0.2 - - - -
326C ARG* 1.3 81.1 - - - +
328C ILE* 1.3 60.7 + - - +
----------------------------------------------------------
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Residues in contact with ILE 328 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
324A LEU* 4.4 21.7 - - + +
327A SER* 3.9 28.9 - - - +
328A ILE* 3.8 34.1 - - + -
324B LEU* 5.0 1.1 - - + -
328B ILE* 4.2 12.8 - - + -
324C LEU* 3.2 44.9 + - + +
325C GLU 3.3 16.6 + - - +
326C ARG 4.9 0.5 - - - -
327C SER* 1.3 80.5 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il