Contacts of the helix formed by residues 59 - 142 (chain B) in PDB entry 3NI0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 59 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B CYS* 1.3 76.8 - - - +
60B ASP* 1.3 66.0 + - - +
61B GLY 2.9 6.4 + - - -
62B LEU* 3.0 19.5 + - + +
63B ARG* 3.2 16.3 + - - +
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Residues in contact with ASP 60 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B CYS* 3.6 23.2 - - - +
59B ARG* 1.3 79.0 + - - +
61B GLY* 1.3 76.5 + - - +
63B ARG* 4.8 2.7 - - - +
64B ALA* 3.6 19.4 + - - +
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Residues in contact with GLY 61 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A GLY* 6.4 2.5 - - - -
65A GLN* 3.5 10.8 - - - +
58B CYS* 4.6 3.1 - - - +
59B ARG* 2.9 1.6 - - - +
60B ASP* 1.3 90.3 + - - +
62B LEU* 1.3 54.4 + - - +
63B ARG 3.3 1.8 - - - -
64B ALA* 3.3 0.8 + - - -
65B GLN* 2.7 41.0 + - - +
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Residues in contact with LEU 62 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B CYS 4.2 16.8 + - - +
59B ARG* 3.0 13.8 + - + +
61B GLY* 1.3 76.1 - - - +
63B ARG* 1.3 67.3 + - - +
65B GLN* 3.4 5.7 + - - +
66B ALA* 3.1 28.1 + - + +
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Residues in contact with ARG 63 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59B ARG 3.2 11.5 + - - +
60B ASP* 4.8 2.5 - - - +
62B LEU* 1.3 81.2 - - - +
64B ALA* 1.3 66.3 + - - +
65B GLN 3.1 0.3 + - - -
66B ALA* 3.3 7.2 + - - +
67B GLU* 3.1 31.0 + - - +
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Residues in contact with ALA 64 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A GLN* 3.1 34.5 + - - +
60B ASP 3.6 18.0 + - - +
61B GLY* 3.3 3.3 + - - +
63B ARG* 1.3 78.4 - - - +
65B GLN* 1.3 57.9 + - - +
67B GLU* 3.9 10.5 - - - +
68B CYS* 3.1 20.4 + - - +
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Residues in contact with GLN 65 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A GLY* 5.3 2.5 - - - +
64A ALA* 3.6 30.5 - - + +
65A GLN* 3.1 41.4 + - + +
68A CYS* 3.7 18.3 - - - +
61B GLY 2.7 17.8 + - - +
62B LEU* 3.7 6.5 - - - +
64B ALA* 1.3 76.3 + - - +
66B ALA* 1.3 60.5 + - - +
67B GLU 3.2 0.2 - - - -
68B CYS* 3.3 2.6 + - - +
69B ARG* 2.9 30.8 + - - +
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Residues in contact with ALA 66 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 3.1 23.5 + - + +
63B ARG* 3.9 9.0 - - - +
65B GLN* 1.3 75.7 - - - +
67B GLU* 1.3 63.3 + - - +
69B ARG* 3.3 11.2 + - - +
70B ASN* 3.1 22.0 + - - +
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Residues in contact with GLU 67 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63B ARG* 3.1 24.1 + - - +
64B ALA* 3.9 8.2 - - - +
66B ALA* 1.3 75.1 - - - +
68B CYS* 1.3 66.5 + - - +
70B ASN* 3.0 10.0 + - - +
71B THR* 3.0 30.9 + - - +
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Residues in contact with CYS 68 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65A GLN* 4.0 10.1 - - - +
68A CYS* 2.0 68.0 - - + -
69A ARG* 3.7 5.6 - - - -
72A THR* 3.9 8.2 - - - +
64B ALA 3.1 16.9 + - - +
65B GLN* 3.8 2.7 - - - +
67B GLU* 1.3 81.8 - - - +
69B ARG* 1.3 55.6 + - - +
71B THR* 3.8 6.6 - - - -
72B THR* 3.0 32.1 + - - -
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Residues in contact with ARG 69 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A CYS* 3.8 5.4 - - - -
65B GLN 2.9 17.7 + - - +
66B ALA* 3.5 10.5 + - - +
68B CYS* 1.3 75.4 - - - +
70B ASN* 1.3 64.8 + - - +
72B THR* 3.3 6.2 + - + -
73B HIS* 2.9 66.2 + - + +
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Residues in contact with ASN 70 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
66B ALA 3.1 12.0 + - - +
67B GLU* 3.0 11.2 + - - +
69B ARG* 1.3 77.5 - - - +
71B THR* 1.3 61.2 + - - +
73B HIS* 3.5 9.4 + - - +
74B LEU* 3.1 51.0 + - - +
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Residues in contact with THR 71 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A THR* 4.0 18.4 - - + -
76A GLN* 5.3 4.3 - - - +
67B GLU* 3.0 22.2 + - - +
68B CYS* 3.8 8.0 - - - -
70B ASN* 1.3 81.1 + - - +
72B THR* 1.3 65.0 + - - +
74B LEU* 3.3 8.5 + - + +
75B LEU* 3.0 36.7 + - + +
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Residues in contact with THR 72 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
68A CYS* 3.6 11.5 + - - -
71A THR* 4.2 11.3 - - + +
72A THR* 3.3 18.3 - - - +
75A LEU* 3.7 13.4 - - + +
68B CYS 3.0 21.0 + - - -
69B ARG* 3.5 8.3 - - - -
71B THR* 1.3 77.6 - - - +
73B HIS* 1.3 63.7 + - + +
75B LEU* 3.4 0.4 + - - -
76B GLN* 2.9 64.2 + - - +
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Residues in contact with HIS 73 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B ARG* 2.9 68.0 + - + +
70B ASN* 3.8 8.3 - - - +
71B THR 3.2 0.2 - - - -
72B THR* 1.3 80.1 - - + +
74B LEU* 1.3 65.6 + - + +
76B GLN* 3.2 21.8 + - - +
77B ARG* 3.0 24.3 + - - +
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Residues in contact with LEU 74 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
70B ASN* 3.1 43.6 + - - +
71B THR* 3.3 8.5 + - + +
73B HIS* 1.3 76.8 - - + +
75B LEU* 1.3 57.7 + - + +
77B ARG* 2.9 41.7 + - - +
78B GLN* 3.0 42.3 + - - +
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Residues in contact with LEU 75 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72A THR* 3.5 42.6 - - + +
75A LEU* 3.9 17.9 - - + +
76A GLN* 3.4 43.1 - - + +
79A LEU* 4.1 20.5 - - + +
71B THR* 3.0 26.4 + - + +
72B THR 3.7 3.8 - - - +
74B LEU* 1.3 75.5 - - + +
76B GLN* 1.3 60.6 - - - +
78B GLN* 3.3 14.2 + - - +
79B LEU* 2.9 29.5 + - - +
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Residues in contact with GLN 76 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
71A THR* 4.8 4.0 - - - +
75A LEU* 3.5 22.6 - - + +
72B THR* 2.9 46.9 + - - +
73B HIS* 3.2 27.1 + - - +
74B LEU 3.3 0.2 - - - -
75B LEU* 1.3 75.8 - - - +
77B ARG* 1.3 58.0 + - - +
79B LEU* 3.4 6.8 + - - +
80B THR* 3.0 33.9 + - - +
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Residues in contact with ARG 77 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73B HIS 3.0 17.8 + - - +
74B LEU* 2.9 38.2 + - - +
76B GLN* 1.3 74.5 - - - +
78B GLN* 1.3 65.6 + - - +
80B THR* 3.4 6.4 + - - -
81B ARG* 3.0 71.7 + - + +
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Residues in contact with GLN 78 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A LEU* 3.0 33.7 - - + +
74B LEU* 3.0 34.0 + - - +
75B LEU* 3.7 14.3 - - - +
77B ARG* 1.3 77.2 - - + +
79B LEU* 1.3 61.9 + - - +
81B ARG* 3.3 17.6 + - - +
82B THR* 2.9 30.1 + - - +
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Residues in contact with LEU 79 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A IPA 4.2 0.7 - - + +
75A LEU* 3.9 17.0 - - + +
78A GLN* 3.6 46.2 - - + +
79A LEU* 3.9 15.2 - - + +
82A THR* 3.5 26.0 - - - +
75B LEU 2.9 16.8 + - - +
76B GLN* 3.7 6.1 - - - +
77B ARG 3.2 0.2 - - - -
78B GLN* 1.3 76.7 - - - +
80B THR* 1.3 58.3 + - - +
82B THR* 3.2 1.7 + - - -
83B GLN* 2.9 55.8 + - - +
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Residues in contact with THR 80 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B GLN* 3.0 19.3 + - - +
77B ARG* 3.7 6.2 - - - -
78B GLN 3.3 0.2 - - - -
79B LEU* 1.3 77.1 - - - +
81B ARG* 1.3 65.1 + - + +
83B GLN* 3.3 14.5 + - - +
84B ASP* 3.0 45.2 + - - +
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Residues in contact with ARG 81 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
77B ARG* 3.0 63.4 + - + +
78B GLN* 3.6 16.6 - - - +
80B THR* 1.3 77.6 - - + +
82B THR* 1.3 59.0 + - - +
84B ASP* 3.4 8.0 + - - +
85B SER* 3.0 32.0 + - - -
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Residues in contact with THR 82 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
79A LEU* 3.4 15.6 - - - +
82A THR* 3.5 22.4 - - + +
83A GLN* 3.5 40.4 + - + +
86A LEU* 4.3 6.4 - - + +
78B GLN* 2.9 17.3 + - - +
79B LEU 3.7 3.8 - - - -
80B THR 3.2 0.2 - - - -
81B ARG* 1.3 74.9 - - - +
83B GLN* 1.3 58.8 - - - +
85B SER* 3.4 6.2 + - - -
86B LEU* 2.9 27.7 + - - +
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Residues in contact with GLN 83 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A IPA 3.0 37.4 + - - +
82A THR* 3.8 11.4 - - + -
79B LEU* 2.9 41.3 + - + +
80B THR* 3.6 17.4 + - - +
82B THR* 1.3 76.8 - - - +
84B ASP* 1.3 60.7 - - - +
86B LEU* 3.2 8.8 + - + +
87B LEU* 3.0 33.8 + - + +
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Residues in contact with ASP 84 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80B THR* 3.0 35.7 + - - +
81B ARG* 3.7 7.1 - - - +
82B THR 3.3 0.2 - - - -
83B GLN* 1.3 77.3 - - - +
85B SER* 1.3 63.3 + - - +
87B LEU* 3.3 16.6 + - - +
88B GLN* 3.0 31.7 + - - +
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Residues in contact with SER 85 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A LEU* 3.6 23.3 - - - +
81B ARG 3.0 17.6 + - - -
82B THR* 3.7 6.2 - - - -
84B ASP* 1.3 75.9 - - - +
86B LEU* 1.3 57.8 + - - +
88B GLN* 3.2 16.0 + - - +
89B ALA* 2.9 29.8 + - - +
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Residues in contact with LEU 86 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A IPA 5.8 1.8 - - - +
82A THR* 4.2 15.0 - - + -
85A SER* 3.6 46.9 - - - +
86A LEU* 3.7 14.3 - - + +
89A ALA* 4.2 7.0 - - + -
82B THR 2.9 14.5 + - - +
83B GLN* 3.3 12.8 - - + +
84B ASP 3.2 0.2 - - - -
85B SER* 1.3 77.2 - - - +
87B LEU* 1.3 65.3 + - + +
89B ALA* 3.2 1.7 + - - +
90B GLU* 2.9 47.1 + - - +
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Residues in contact with LEU 87 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B GLN* 3.0 20.4 + - + +
84B ASP* 3.3 18.6 + - - +
86B LEU* 1.3 77.8 - - + +
88B GLN* 1.3 59.0 + - + +
90B GLU* 3.4 20.7 + - - +
91B THR* 3.0 31.6 + - - -
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Residues in contact with GLN 88 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
84B ASP* 3.0 21.3 + - - +
85B SER* 3.6 17.3 + - - +
87B LEU* 1.3 77.9 - - + +
89B ALA* 1.3 57.3 + - - +
91B THR* 3.3 8.1 + - - -
92B GLN* 3.0 26.0 + - - +
----------------------------------------------------------
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Residues in contact with ALA 89 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A LEU* 3.8 14.6 - - + -
89A ALA* 3.8 23.3 - - + +
90A GLU* 4.0 15.9 - - + +
93A ALA* 4.6 1.8 - - + +
85B SER 2.9 16.2 + - - +
86B LEU 3.6 4.5 - - - +
88B GLN* 1.3 74.7 - - - +
90B GLU* 1.3 65.4 + - - +
92B GLN* 3.2 11.9 + - - +
93B ALA* 3.0 23.2 + - - +
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Residues in contact with GLU 90 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A ALA* 4.3 9.6 - - + -
86B LEU* 2.9 40.8 + - + +
87B LEU* 3.5 29.9 - - - +
89B ALA* 1.3 77.2 - - - +
91B THR* 1.3 56.1 + - - +
93B ALA* 3.2 8.1 + - - +
94B ASN* 2.9 40.8 + - - +
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Residues in contact with THR 91 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B LEU 3.0 15.2 + - - -
88B GLN* 3.6 10.5 - - - -
89B ALA 3.2 0.2 - - - -
90B GLU* 1.3 75.6 - - - +
92B GLN* 1.3 61.6 + - - +
94B ASN* 3.7 10.8 + - + +
95B SER* 2.9 32.5 + - - -
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Residues in contact with GLN 92 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A GLU* 6.0 1.7 - - - +
93A ALA* 3.9 26.1 + - + +
97A ASN* 5.8 3.6 - - - +
88B GLN 3.0 14.3 + - - +
89B ALA* 3.2 13.7 + - - +
91B THR* 1.3 75.8 - - - +
93B ALA* 1.3 57.8 + - - +
95B SER* 3.8 5.5 - - - -
96B CYS* 3.0 29.7 + - + +
----------------------------------------------------------
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Residues in contact with ALA 93 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A ALA* 4.6 5.4 - - - +
92A GLN* 4.8 13.7 - - + +
93A ALA* 4.4 22.2 - - + +
96A CYS* 4.6 2.0 - - + +
89B ALA 3.0 13.0 + - - +
90B GLU* 3.5 10.5 - - - +
92B GLN* 1.3 79.1 - - - +
94B ASN* 1.3 58.0 + - - +
96B CYS* 3.4 6.3 + - - +
97B ASN* 2.9 39.3 + - - +
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Residues in contact with ASN 94 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B GLU* 2.9 29.4 + - - +
91B THR* 3.2 10.0 + - + +
93B ALA* 1.3 77.3 - - - +
95B SER* 1.3 64.9 + - - +
97B ASN* 3.2 16.1 + - - +
98B LEU* 3.1 26.8 + - - +
----------------------------------------------------------
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Residues in contact with SER 95 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
91B THR* 2.9 21.5 + - - -
92B GLN* 3.8 5.4 - - - -
94B ASN* 1.3 73.2 - - - +
96B CYS* 1.3 66.7 + - - +
98B LEU* 3.1 14.0 + - - +
99B THR* 3.0 27.3 + - - -
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Residues in contact with CYS 96 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
93A ALA* 4.5 3.6 - - - +
96A CYS* 2.0 63.0 - - + -
97A ASN* 3.6 6.3 - - - -
100A VAL* 3.6 12.6 - - - -
92B GLN* 3.0 20.3 + - + +
93B ALA* 3.6 5.4 - - - +
94B ASN 3.3 0.2 - - - -
95B SER* 1.3 76.4 - - - +
97B ASN* 1.3 61.8 + - - +
99B THR* 3.2 7.7 + - - -
100B VAL* 3.0 22.2 + - - +
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Residues in contact with ASN 97 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A CYS* 3.8 14.6 - - - +
93B ALA* 2.9 25.8 + - - +
94B ASN* 3.4 18.6 + - - +
95B SER 3.2 0.4 - - - -
96B CYS* 1.3 76.6 - - - +
98B LEU* 1.3 62.6 + - + +
100B VAL* 3.3 7.8 + - - +
101B VAL* 3.1 28.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 98 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94B ASN 3.1 17.6 + - - +
95B SER* 3.1 12.8 + - - +
97B ASN* 1.3 76.7 - - + +
99B THR* 1.3 60.1 + - - +
101B VAL* 3.2 11.0 + - + +
102B THR* 2.9 33.8 + - - +
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Residues in contact with THR 99 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A VAL* 3.9 19.1 - - + -
104A GLN* 5.3 3.1 - - - +
95B SER* 3.0 17.8 + - - -
96B CYS* 3.2 10.5 + - - -
98B LEU* 1.3 75.4 - - - +
100B VAL* 1.3 58.5 + - - +
102B THR* 3.4 7.4 + - - -
103B LEU* 3.0 47.8 + - + +
----------------------------------------------------------
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Residues in contact with VAL 100 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
96A CYS* 3.7 14.6 - - - -
99A THR* 4.1 20.9 - - + -
100A VAL* 3.7 18.6 - - + +
103A LEU* 3.9 18.3 - - + +
96B CYS 3.0 18.9 + - - +
97B ASN* 3.5 10.5 - - - +
99B THR* 1.3 77.7 - - - +
101B VAL* 1.3 60.0 + - + +
103B LEU* 3.3 2.5 + - - +
104B GLN* 2.8 46.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 101 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B ASN* 3.1 17.0 + - + +
98B LEU* 3.2 13.7 + - + +
100B VAL* 1.3 77.0 - - + +
102B THR* 1.3 65.2 + - - +
104B GLN* 3.3 14.9 + - + +
105B GLU* 3.0 46.7 + - + +
----------------------------------------------------------
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Residues in contact with THR 102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B LEU* 2.9 21.9 + - - +
99B THR* 3.5 9.3 - - + -
100B VAL 3.3 0.2 - - - -
101B VAL* 1.3 78.5 - - - +
103B LEU* 1.3 62.5 + - + +
105B GLU* 3.3 5.6 + - - +
106B SER* 3.0 33.5 + - - +
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Residues in contact with LEU 103 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100A VAL* 3.7 28.7 - - + +
103A LEU* 3.9 20.3 - - + +
104A GLN* 3.7 35.9 - - + +
107A LEU* 3.9 27.4 - - + +
99B THR* 3.0 29.1 + - + +
100B VAL 3.8 3.4 - - - +
102B THR* 1.3 80.0 - - + +
104B GLN* 1.3 62.2 + - - +
106B SER* 3.4 3.7 + - - -
107B LEU* 2.9 31.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A LEU* 4.0 21.9 - - + +
100B VAL* 2.8 36.9 + - - +
101B VAL* 3.3 16.1 + - - +
103B LEU* 1.3 76.4 - - - +
105B GLU* 1.3 58.9 + - + +
107B LEU* 3.4 6.1 + - - +
108B GLU* 2.9 44.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 105 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101B VAL* 3.0 38.5 + - + +
102B THR* 3.8 5.2 - - - +
104B GLN* 1.3 76.4 - - + +
106B SER* 1.3 62.6 + - - +
108B GLU* 3.4 17.1 + - - +
109B LYS* 3.2 29.0 + - + +
----------------------------------------------------------
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Residues in contact with SER 106 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A LEU* 4.0 22.2 - - - -
102B THR* 3.0 24.7 + - - +
103B LEU* 3.8 5.3 - - - +
105B GLU* 1.3 75.5 - - - +
107B LEU* 1.3 58.5 + - - +
109B LYS* 3.3 7.6 + - - +
110B LYS* 3.0 32.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 107 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103A LEU* 3.9 25.8 - - + +
106A SER* 3.5 31.6 - - - +
107A LEU* 3.9 30.5 - - + +
110A LYS* 4.0 19.1 - - + -
103B LEU 2.9 17.8 + - - +
104B GLN* 3.7 4.9 - - - +
106B SER* 1.3 74.1 - - - +
108B GLU* 1.3 61.6 + - + +
110B LYS* 3.3 0.6 + - - -
111B VAL* 2.9 44.2 + - + +
----------------------------------------------------------
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Residues in contact with GLU 108 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104B GLN* 2.9 37.9 + - - +
105B GLU* 3.7 16.3 + - - +
107B LEU* 1.3 78.0 - - + +
109B LYS* 1.3 63.5 + - + +
111B VAL* 3.5 6.4 + - - +
112B SER* 3.0 29.3 + - - -
----------------------------------------------------------
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Residues in contact with LYS 109 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105B GLU* 3.2 17.2 + - + +
106B SER* 3.7 8.5 - - - +
108B GLU* 1.3 81.5 - - + +
110B LYS* 1.3 58.8 + - + +
112B SER* 3.4 9.1 + - - -
113B GLN* 2.9 28.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 110 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A LEU* 4.0 17.7 - - + -
110A LYS* 4.1 21.1 - - + +
111A VAL* 4.1 29.8 + - + +
114A ALA* 4.3 10.9 - - + +
115A LEU* 6.3 1.4 - - - +
106B SER* 3.0 18.0 + - - +
107B LEU 3.9 3.1 - - - +
108B GLU 3.3 0.2 - - - -
109B LYS* 1.3 75.2 - - + +
111B VAL* 1.3 60.9 + - - +
113B GLN* 3.0 34.4 + - - +
114B ALA* 3.0 28.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 111 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A LYS* 4.2 26.2 + - - +
107B LEU* 2.9 39.2 + - + +
108B GLU* 3.8 6.7 - - - +
110B LYS* 1.3 76.9 - - - +
112B SER* 1.3 63.4 + - - +
114B ALA* 3.3 4.1 + - - +
115B LEU* 3.1 36.2 + - + +
----------------------------------------------------------
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Residues in contact with SER 112 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B GLU 3.0 18.8 + - - -
109B LYS* 3.6 11.7 - - - +
111B VAL* 1.3 76.8 - - - +
113B GLN* 1.3 63.4 + - - +
115B LEU* 3.3 14.0 + - - +
116B GLU* 3.0 30.1 + - - +
----------------------------------------------------------
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Residues in contact with GLN 113 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A ALA* 3.8 15.2 - - + +
118A GLN* 3.5 15.8 - - - +
109B LYS 2.9 17.5 + - - +
110B LYS* 3.0 38.8 + - - +
111B VAL 3.3 0.2 - - - -
112B SER* 1.3 77.5 - - - +
114B ALA* 1.3 57.2 + - - +
116B GLU* 3.2 7.1 + - - +
117B GLN* 2.8 65.9 + - + +
----------------------------------------------------------
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Residues in contact with ALA 114 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A LYS* 4.3 24.5 - - + +
113A GLN* 5.7 3.1 - - + -
114A ALA* 5.4 6.3 - - + +
117A GLN* 3.0 32.5 + - - +
110B LYS 3.0 17.4 + - - +
111B VAL 3.6 5.4 - - - +
113B GLN* 1.3 77.1 - - - +
115B LEU* 1.3 57.9 + - + +
118B GLN* 2.9 25.8 + - - +
----------------------------------------------------------
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Residues in contact with LEU 115 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B VAL* 3.1 33.1 + - + +
112B SER* 3.5 15.5 - - - +
113B GLN 3.2 0.2 - - - -
114B ALA* 1.3 75.0 - - + +
116B GLU* 1.3 66.2 + - + +
118B GLN* 3.3 6.7 + - + +
119B ALA* 3.0 23.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112B SER* 3.0 22.1 + - - +
113B GLN* 3.7 6.5 - - - +
115B LEU* 1.3 76.9 - - + +
117B GLN* 1.3 60.8 + - + +
119B ALA* 3.3 10.9 + - - +
120B ARG* 3.1 26.0 + - - +
----------------------------------------------------------
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Residues in contact with GLN 117 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A ALA* 3.1 28.1 + - - +
117A GLN* 2.9 32.6 + - + +
118A GLN* 3.2 23.8 + - - +
121A ILE* 3.8 18.5 - - + +
113B GLN* 2.8 42.9 + - + +
116B GLU* 1.3 76.5 - - + +
118B GLN* 1.3 60.3 + - - +
120B ARG* 3.4 4.2 + - - +
121B ILE* 3.0 32.7 + - - +
----------------------------------------------------------
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Residues in contact with GLN 118 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A GLN* 3.1 19.2 + - - +
114B ALA 2.9 18.1 + - - +
115B LEU* 3.3 8.5 + - + +
117B GLN* 1.3 75.1 - - - +
119B ALA* 1.3 65.4 + - - +
121B ILE* 3.3 26.7 + - - +
122B LYS* 3.0 41.9 + - + +
125B GLU* 5.5 0.2 + - - -
----------------------------------------------------------
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Residues in contact with ALA 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115B LEU 3.0 13.1 + - - +
116B GLU* 3.5 16.8 - - - +
118B GLN* 1.3 77.2 - - - +
120B ARG* 1.3 60.4 + - - +
122B LYS* 3.4 7.7 + - - +
123B GLU* 3.1 23.1 + - - +
----------------------------------------------------------
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Residues in contact with ARG 120 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A ILE* 4.2 20.3 - - + +
125A GLU* 3.8 21.8 + - - +
116B GLU 3.1 12.7 + - - +
117B GLN* 3.6 10.5 - - - +
119B ALA* 1.3 75.1 - - - +
121B ILE* 1.3 60.7 + - - +
123B GLU* 3.3 24.7 + - - +
124B LEU* 3.0 63.6 + - + +
----------------------------------------------------------
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Residues in contact with ILE 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A GLN* 3.9 37.9 - - + +
120A ARG* 4.0 20.0 - - + -
121A ILE* 3.6 17.5 - - + -
124A LEU* 3.8 14.3 - - + +
117B GLN 3.0 22.3 + - - +
118B GLN* 3.6 27.6 - - - +
119B ALA 3.3 0.2 - - - -
120B ARG* 1.3 76.6 - - - +
122B LYS* 1.3 56.6 + - - +
124B LEU* 3.4 2.4 + - - +
125B GLU* 2.9 51.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 122 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B GLN* 3.0 35.7 + - + +
119B ALA* 3.7 7.2 - - - +
121B ILE* 1.3 73.2 - - - +
123B GLU* 1.3 61.1 + - - +
125B GLU* 3.7 20.2 + - - +
126B ASN* 3.0 48.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 123 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B ALA 3.1 13.9 + - - +
120B ARG* 3.5 32.0 + - - +
122B LYS* 1.3 77.9 - - - +
124B LEU* 1.3 57.4 + - + +
126B ASN* 3.4 10.4 + - - +
127B GLU* 3.0 26.7 + - - +
----------------------------------------------------------
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Residues in contact with LEU 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A ILE* 3.9 33.2 - - + +
124A LEU* 3.8 17.7 - - + -
125A GLU* 4.1 12.1 - - + -
128A VAL* 4.0 23.9 - - + +
120B ARG* 3.0 59.2 + - + +
121B ILE 3.8 3.1 - - - +
123B GLU* 1.3 75.4 - - + +
125B GLU* 1.3 60.1 + - - +
127B GLU* 3.2 7.1 + - + +
128B VAL* 2.9 34.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A ARG* 3.1 25.2 + - - +
124A LEU* 3.8 16.4 - - + -
118B GLN* 5.5 0.2 + - - -
121B ILE* 2.9 30.9 + - - +
122B LYS* 3.7 30.6 + - + +
124B LEU* 1.3 76.0 - - - +
126B ASN* 1.3 63.4 + - - +
128B VAL* 3.3 7.9 + - - +
129B THR* 3.1 28.4 + - - -
----------------------------------------------------------
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Residues in contact with ASN 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B LYS* 3.0 38.4 + - - +
123B GLU* 3.5 9.3 - - - +
124B LEU 3.2 0.2 - - - -
125B GLU* 1.3 79.3 - - - +
127B GLU* 1.3 57.1 + - - +
129B THR* 3.5 7.0 + - - -
130B LYS* 3.0 30.2 + - - +
----------------------------------------------------------
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Residues in contact with GLU 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A VAL* 4.1 19.3 - - + +
132A ASN* 5.1 2.3 + - - +
123B GLU 3.0 13.6 + - - +
124B LEU* 3.2 12.1 + - + +
126B ASN* 1.3 72.7 - - - +
128B VAL* 1.3 61.7 + - - +
130B LYS* 3.1 34.3 + - - +
131B LEU* 2.9 58.3 + - + +
----------------------------------------------------------
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Residues in contact with VAL 128 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A LEU* 4.1 18.8 - - + -
127A GLU* 4.1 24.7 - - + +
128A VAL* 3.8 19.3 - - + +
131A LEU* 3.7 19.4 - - + +
124B LEU 2.9 18.4 + - - +
125B GLU* 3.6 8.5 - - - +
126B ASN 3.3 0.2 - - - -
127B GLU* 1.3 77.8 - - - +
129B THR* 1.3 60.3 + - - +
131B LEU* 4.7 0.2 - - - -
132B ASN* 2.9 33.1 + - + +
----------------------------------------------------------
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Residues in contact with THR 129 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B GLU 3.1 17.3 + - - -
126B ASN* 3.8 7.0 + - - -
128B VAL* 1.3 79.0 - - - +
130B LYS* 1.3 63.2 + - - +
132B ASN* 3.3 6.1 + - + +
133B GLN* 3.0 50.6 + - + +
----------------------------------------------------------
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Residues in contact with LYS 130 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B ASN 3.0 18.0 + - - +
127B GLU* 3.1 41.2 + - - +
129B THR* 1.3 77.8 - - - +
131B LEU* 1.3 69.6 + - - +
133B GLN* 3.3 14.2 + - - +
134B GLU* 3.0 48.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A VAL* 3.9 23.1 - - + +
131A LEU* 4.0 20.6 - - + -
132A ASN* 3.5 24.7 - - - +
135A LEU* 3.5 24.1 - - + +
127B GLU* 2.9 48.6 + - + +
128B VAL 3.9 2.9 - - - +
130B LYS* 1.3 83.2 - - - +
132B ASN* 1.3 58.0 + - - +
134B GLU* 3.3 13.8 + - - +
135B LEU* 3.0 35.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 132 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A GLU* 5.2 1.6 - - - +
131A LEU* 3.9 22.6 - - - +
128B VAL* 2.9 22.1 + - + +
129B THR* 3.6 7.9 - - + +
130B LYS 3.2 0.2 - - - -
131B LEU* 1.3 78.1 - - - +
133B GLN* 1.3 57.8 + - + +
135B LEU* 3.4 8.7 + - - +
136B GLU* 3.0 33.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 133 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B THR* 3.0 38.2 + - + +
130B LYS* 3.7 12.6 - - - +
132B ASN* 1.3 76.5 - - + +
134B GLU* 1.3 64.9 + - + +
136B GLU* 3.2 7.2 + - - +
137B ASN* 2.9 37.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A LEU* 3.8 25.2 - - + +
139A ARG* 5.1 5.2 + - - -
130B LYS* 3.0 45.2 + - + +
131B LEU* 3.6 16.0 - - - +
132B ASN 3.3 0.2 - - - -
133B GLN* 1.3 76.0 - - + +
135B LEU* 1.3 56.5 + - - +
137B ASN* 3.5 7.1 + - - +
138B LEU* 3.0 39.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 135 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A LEU* 3.8 36.3 - - + +
134A GLU* 3.5 20.4 - - + +
135A LEU* 3.5 35.4 - - + +
138A LEU* 3.7 21.3 - - + -
131B LEU 3.0 17.5 + - - +
132B ASN* 3.6 6.1 - - - +
134B GLU* 1.3 78.7 - - - +
136B GLU* 1.3 56.3 + - - +
138B LEU* 3.5 2.7 + - - +
139B ARG* 3.0 60.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 136 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B ASN* 3.0 22.5 + - - +
133B GLN* 3.2 8.2 + - - +
135B LEU* 1.3 74.5 - - - +
137B ASN* 1.3 67.3 + - - +
139B ARG* 3.9 5.6 - - - +
140B ILE* 3.0 46.0 + - + +
----------------------------------------------------------
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Residues in contact with ASN 137 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133B GLN* 2.9 30.2 + - - +
134B GLU* 3.8 6.9 - - - +
136B GLU* 1.3 78.9 - - - +
138B LEU* 1.3 59.3 + - + +
140B ILE* 3.9 7.3 - - - +
141B GLN* 3.0 48.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 138 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A LEU* 3.7 26.5 - - + +
138A LEU* 4.3 18.8 - - + -
139A ARG* 6.5 0.7 - - + -
134B GLU* 3.0 24.5 + - + +
135B LEU 3.9 3.8 - - - +
136B GLU 3.3 0.2 - - - -
137B ASN* 1.3 78.7 - - + +
139B ARG* 1.3 58.4 + - - +
141B GLN* 3.5 20.0 + - - +
142B LYS* 3.0 45.9 + - - +
----------------------------------------------------------
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Residues in contact with ARG 139 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A GLU* 3.1 38.2 + - - +
138A LEU* 4.6 18.8 - - + +
135B LEU* 3.0 46.4 + - - +
136B GLU* 3.9 5.6 - - - +
137B ASN 3.3 0.2 - - - -
138B LEU* 1.3 76.0 - - - +
140B ILE* 1.3 65.2 + - + +
142B LYS* 3.1 24.6 + - + +
----------------------------------------------------------
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Residues in contact with ILE 140 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B GLU* 3.0 45.3 + - + +
137B ASN* 3.9 7.6 - - - +
139B ARG* 1.3 75.7 - - + +
141B GLN* 1.3 58.1 + - + +
142B LYS 3.2 2.6 - - - +
144B THR* 2.5 50.9 + - + +
----------------------------------------------------------
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Residues in contact with GLN 141 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137B ASN* 3.0 41.2 + - - +
138B LEU* 3.7 20.4 - - - +
140B ILE* 1.3 79.2 - - + +
142B LYS* 1.3 64.8 + - + +
143B GLU 3.3 2.9 + - - -
144B THR* 3.4 20.8 + - - +
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Residues in contact with LYS 142 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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138A LEU* 5.1 25.1 - - + -
142A LYS* 5.1 18.2 - - - +
138B LEU* 3.0 36.3 + - - +
139B ARG* 3.1 21.7 - - + +
140B ILE 3.2 3.0 - - - +
141B GLN* 1.3 77.0 - - + +
143B GLU* 1.3 71.2 + - + +
144B THR* 3.1 2.1 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
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Atomic class I II III IV V VI VII VIII
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I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
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Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il