Contacts of the helix formed by residues 188 - 257 (chain A) in PDB entry 3Q84
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 188 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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180A GLU 4.6 8.0 + - - +
183A VAL 3.8 29.9 + - - +
185A PRO* 3.1 48.8 - - + +
189A LYS* 1.3 63.1 + - - +
190A LYS* 3.1 15.7 - - - +
191A LEU* 3.2 42.9 + - - +
192A GLN* 3.9 2.3 + - - +
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Residues in contact with LYS 189 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185A PRO* 4.9 18.3 - - + +
188A GLN* 1.3 78.6 - - - +
190A LYS* 1.3 61.2 + - - +
191A LEU 3.3 0.2 - - - -
192A GLN* 3.8 15.0 + - + +
193A ASP* 3.3 21.9 + - + +
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Residues in contact with LYS 190 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A GLN 3.1 7.9 - - - +
189A LYS* 1.3 79.6 - - - +
191A LEU* 1.3 56.6 + - - +
193A ASP* 3.4 8.4 + - - +
194A LYS* 3.0 25.8 + - - +
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Residues in contact with LEU 191 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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173A ARG* 3.7 28.5 - - + +
174A GLU* 2.6 39.7 - - + +
188A GLN* 3.2 33.0 + - - +
190A LYS* 1.3 76.7 - - - +
192A GLN* 1.3 69.6 + - + +
194A LYS* 3.1 17.6 + - - +
195A VAL* 3.1 28.8 + - - +
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Residues in contact with GLN 192 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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174A GLU* 4.2 9.9 - - + +
188A GLN 3.9 3.0 + - - +
189A LYS* 3.8 16.9 + - - +
191A LEU* 1.3 86.7 - - + +
193A ASP* 1.3 57.2 + - - +
194A LYS 3.3 0.2 - - - -
195A VAL* 3.4 5.2 + - - +
196A ASP* 2.9 31.6 + - - +
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Residues in contact with ASP 193 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A LYS* 3.3 20.3 + - + +
190A LYS* 3.5 10.1 - - - +
191A LEU 3.2 0.6 - - - -
192A GLN* 1.3 73.8 - - - +
194A LYS* 1.3 60.6 + - - +
196A ASP* 3.6 13.2 - - - +
197A LYS* 3.2 23.9 + - - +
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Residues in contact with LYS 194 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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166A GLU* 5.9 1.8 - - - +
169A LEU* 4.4 5.2 - - + -
170A ALA* 3.5 34.8 + - + +
173A ARG* 2.4 51.6 - - - +
190A LYS 3.0 12.3 + - - +
191A LEU* 3.1 24.8 + - - +
193A ASP* 1.3 73.8 - - - +
195A VAL* 1.3 56.6 + - - +
196A ASP 3.0 4.3 - - - -
197A LYS* 3.0 7.5 + - + +
198A CYS* 2.9 41.7 + - - +
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Residues in contact with VAL 195 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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167A GLU* 5.3 2.0 - - + -
170A ALA* 3.5 39.0 - - + +
171A MSE 4.6 13.5 - - + -
174A GLU* 2.9 29.6 - - + +
191A LEU 3.1 11.5 + - - +
192A GLN* 3.4 5.8 + - - +
194A LYS* 1.3 77.1 - - - +
196A ASP* 1.3 60.1 + - - +
198A CYS* 4.0 3.0 - - - +
199A LYS* 3.4 34.7 + - + +
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Residues in contact with ASP 196 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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192A GLN 2.9 19.6 + - - +
193A ASP* 3.6 12.8 - - - +
194A LYS 3.0 0.2 - - - -
195A VAL* 1.3 74.3 - - - +
197A LYS* 1.3 65.1 + - - +
198A CYS 3.1 2.7 + - - -
199A LYS* 3.2 13.6 + - - +
200A GLN* 2.8 30.3 + - - +
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Residues in contact with LYS 197 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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193A ASP 3.2 14.2 + - - +
194A LYS* 3.0 8.8 + - + +
196A ASP* 1.3 77.4 - - - +
198A CYS* 1.3 58.8 + - - +
199A LYS 3.4 0.2 - - - -
200A GLN* 3.5 13.2 + - - +
201A ASP* 3.1 34.7 + - - +
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Residues in contact with CYS 198 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163A ALA 4.6 1.1 - - - +
166A GLU* 4.1 32.5 - - + -
167A GLU* 4.3 19.1 - - + +
170A ALA* 5.1 1.3 - - + -
194A LYS* 2.9 34.4 + - - +
195A VAL* 4.3 8.1 - - - +
196A ASP 3.1 0.2 - - - -
197A LYS* 1.3 77.5 - - - +
199A LYS* 1.3 63.6 + - - +
200A GLN 3.2 1.3 - - - -
201A ASP* 3.9 11.1 - - - +
202A VAL* 3.2 28.6 + - - +
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Residues in contact with LYS 199 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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167A GLU* 2.7 34.1 - - + +
171A MSE 5.5 6.5 - - - -
195A VAL* 3.4 25.0 + - + +
196A ASP* 3.2 5.6 + - - +
198A CYS* 1.3 78.7 - - - +
200A GLN* 1.3 64.5 + - + +
202A VAL* 3.8 3.5 - - - +
203A GLN* 3.2 28.2 + - + +
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Residues in contact with GLN 200 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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196A ASP* 2.8 39.0 + - - +
197A LYS* 3.5 11.9 - - - +
199A LYS* 1.3 77.1 - - + +
201A ASP* 1.3 61.7 + - - +
203A GLN* 3.1 9.2 + - - +
204A LYS* 2.9 28.1 + - - +
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Residues in contact with ASP 201 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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163A ALA* 4.3 12.1 - - + -
197A LYS* 3.1 23.9 + - - +
198A CYS* 3.9 12.9 - - - +
200A GLN* 1.3 73.2 - - - +
202A VAL* 1.3 66.8 + - - +
204A LYS* 3.1 7.4 + - - +
205A THR* 2.8 30.9 + - - -
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Residues in contact with VAL 202 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160A TYR* 4.3 11.0 - - + +
163A ALA* 3.7 26.7 - - - +
164A CYS* 4.1 11.0 - - - +
167A GLU* 4.1 22.2 - - - +
198A CYS 3.2 18.1 + - - +
199A LYS* 3.8 7.4 - - - +
200A GLN 3.4 0.2 - - - -
201A ASP* 1.3 76.0 - - - +
203A GLN* 1.3 64.6 + - - +
205A THR* 3.3 8.5 - - - +
206A GLN* 2.8 48.1 + - - +
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Residues in contact with GLN 203 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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199A LYS 3.2 17.1 + - - +
200A GLN* 3.1 9.8 + - - +
201A ASP 3.1 0.8 - - - -
202A VAL* 1.3 81.7 - - - +
204A LYS* 1.3 63.9 + - - +
206A GLN* 3.1 18.7 + - - +
207A GLU* 2.9 23.0 + - - +
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Residues in contact with LYS 204 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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200A GLN 2.9 16.6 + - - +
201A ASP* 3.7 10.3 - - - +
203A GLN* 1.3 71.1 - - - +
205A THR* 1.3 63.1 + - - +
207A GLU* 3.1 11.8 + - - +
208A LYS* 3.1 27.4 + - + +
211A LYS* 5.6 0.2 + - - -
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Residues in contact with THR 205 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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159A ALA* 3.5 15.9 + - - +
160A TYR* 3.2 32.4 - - + +
163A ALA* 3.7 14.3 - - + +
201A ASP* 2.8 14.0 + - - +
202A VAL 3.3 11.0 - - - +
204A LYS* 1.3 76.6 - - - +
206A GLN* 1.3 66.3 + - - +
208A LYS* 2.8 45.5 + - - +
209A TYR* 3.1 9.2 + - - +
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Residues in contact with GLN 206 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160A TYR* 3.5 38.2 + - + -
202A VAL* 2.8 31.4 + - - +
203A GLN* 3.5 14.4 + - - +
205A THR* 1.3 72.1 - - - +
207A GLU* 1.3 66.7 + - - +
209A TYR* 3.2 2.8 + - - +
210A GLU* 2.7 55.3 + - - +
302B PHE* 4.2 9.4 - - + -
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Residues in contact with GLU 207 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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203A GLN 2.9 12.7 + - - +
204A LYS* 3.1 13.9 + - - +
206A GLN* 1.3 78.2 - - - +
208A LYS* 1.3 62.9 + - - +
210A GLU* 3.2 10.2 + - - +
211A LYS* 3.0 48.5 + - - +
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Residues in contact with LYS 208 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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156A ALA* 3.9 20.6 - - + +
159A ALA* 3.7 21.5 - - - +
204A LYS* 3.2 18.4 - - + +
205A THR* 2.8 39.3 + - - +
207A GLU* 1.3 77.5 - - - +
209A TYR* 1.3 70.3 + - - +
211A LYS* 3.2 23.9 + - + +
212A VAL* 3.0 29.2 + - + +
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Residues in contact with TYR 209 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153A LEU* 4.5 19.0 - - + +
156A ALA* 4.1 16.6 - - + +
157A LYS* 3.5 44.7 - - + +
160A TYR* 3.8 24.2 - + + -
161A HIS* 5.7 0.2 - + - -
205A THR 3.1 18.7 + - - +
206A GLN* 3.6 5.4 - - - +
208A LYS* 1.3 79.6 - - - +
210A GLU* 1.3 61.5 + - - +
212A VAL* 3.3 1.7 + - + +
213A LEU* 2.9 33.3 + - + +
301B GLN 3.7 11.7 + - - -
302B PHE* 3.7 35.7 - + - -
303B GLU* 3.7 28.7 + - - +
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Residues in contact with GLU 210 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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206A GLN* 2.7 51.9 + - - +
207A GLU* 3.7 8.0 - - + +
208A LYS 3.2 0.2 - - - -
209A TYR* 1.3 76.0 - - - +
211A LYS* 1.3 62.0 + - - +
213A LEU* 3.2 10.7 + - - +
214A GLU* 3.0 33.8 + - - +
302B PHE* 3.5 25.4 - - + -
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Residues in contact with LYS 211 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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207A GLU* 3.0 42.3 + - - +
208A LYS* 3.4 30.6 - - - +
210A GLU* 1.3 73.7 - - - +
212A VAL* 1.3 69.4 + - + +
214A GLU* 3.5 18.1 - - - +
215A ASP* 3.0 22.3 + - - +
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Residues in contact with VAL 212 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149A LYS* 4.6 3.6 - - + +
152A GLU* 4.1 24.0 - - + +
153A LEU* 3.7 38.6 - - + +
156A ALA* 4.7 5.4 - - + -
208A LYS* 3.0 19.5 + - + +
209A TYR* 3.8 4.7 - - + +
211A LYS* 1.3 80.3 - - + +
213A LEU* 1.3 63.2 + - - +
215A ASP* 3.2 5.8 + - + +
216A VAL* 3.2 26.2 + - + +
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Residues in contact with LEU 213 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153A LEU* 4.3 10.5 - - + +
209A TYR* 2.9 25.0 + - + +
210A GLU* 3.3 11.2 - - - +
211A LYS 3.1 0.2 - - - -
212A VAL* 1.3 80.1 - - - +
214A GLU* 1.3 60.9 + - + +
216A VAL* 3.3 9.1 - - + +
217A GLY* 3.1 19.1 + - - -
300B PRO* 4.2 23.8 - - + +
301B GLN* 4.1 15.9 - - - +
302B PHE* 4.0 38.1 - - + +
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Residues in contact with GLU 214 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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210A GLU* 3.0 25.4 + - - +
211A LYS* 3.5 21.8 - - - +
213A LEU* 1.3 74.0 - - + +
215A ASP* 1.3 65.7 + - - +
216A VAL 3.0 1.6 - - - -
217A GLY* 3.4 2.0 + - - +
218A LYS* 2.8 24.3 + - - +
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Residues in contact with ASP 215 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149A LYS* 2.9 38.2 + - + +
211A LYS 3.0 15.4 + - - +
212A VAL* 3.2 5.8 + - + +
214A GLU* 1.3 76.5 - - - +
216A VAL* 1.3 51.9 + - - +
218A LYS* 2.9 15.6 + - - +
219A THR* 2.7 43.9 + - - +
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Residues in contact with VAL 216 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146A TRP* 3.8 17.7 - - + -
149A LYS* 4.1 25.8 - - + -
150A MSE 5.1 2.9 - - - -
153A LEU* 4.2 19.7 - - + -
212A VAL* 3.2 19.0 + - + +
213A LEU* 3.3 10.3 - - + +
214A GLU 3.0 0.2 - - - -
215A ASP* 1.3 75.7 - - - +
217A GLY* 1.3 54.9 + - - +
219A THR* 2.8 21.4 + - - -
220A THR* 2.6 37.7 + - + +
300B PRO* 4.0 21.1 - - + -
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Residues in contact with GLY 217 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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213A LEU 3.1 11.0 + - - -
214A GLU* 3.7 3.4 - - - -
216A VAL* 1.3 79.8 - - - +
218A LYS* 1.3 61.0 + - - +
219A THR 3.6 0.2 + - - -
220A THR* 3.6 10.5 + - - +
221A PRO* 3.6 15.9 - - - +
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Residues in contact with LYS 218 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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214A GLU 2.8 16.0 + - - +
215A ASP* 2.9 21.3 + - - +
217A GLY* 1.3 79.2 - - - +
219A THR* 1.3 63.0 + - + +
221A PRO* 3.5 10.3 - - - +
222A GLN* 5.3 1.6 + - - +
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Residues in contact with THR 219 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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145A PRO* 6.1 2.8 - - - +
146A TRP* 4.3 11.7 - - - +
149A LYS* 4.4 17.8 - - - +
215A ASP* 2.7 39.7 + - - +
216A VAL* 2.8 9.4 + - - -
218A LYS* 1.3 77.5 - - + +
220A THR* 1.3 64.7 + - - +
221A PRO* 3.4 2.5 - - - -
222A GLN* 3.4 9.9 + - - +
223A TYR* 3.0 22.3 + - - +
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Residues in contact with THR 220 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146A TRP* 3.3 32.1 - - + -
216A VAL* 2.6 35.2 - - + +
217A GLY* 3.6 10.9 + - - -
219A THR* 1.3 79.2 - - - +
221A PRO* 1.3 71.6 - - - +
223A TYR* 3.3 2.7 + - - +
224A MSE 3.0 32.8 + - - +
299B TRP* 4.7 14.5 - - + -
300B PRO* 6.0 0.9 - - + -
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Residues in contact with PRO 221 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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217A GLY 3.6 9.4 - - - +
218A LYS* 3.5 14.1 - - - +
219A THR 3.4 5.2 - - - -
220A THR* 1.3 98.2 - - - +
222A GLN* 1.3 56.2 + - - +
224A MSE 3.5 9.3 + - + +
225A GLU* 3.2 27.0 + - - +
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Residues in contact with GLN 222 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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218A LYS 5.5 0.9 - - - +
219A THR* 3.4 12.5 + - - +
220A THR 3.1 0.6 - - - -
221A PRO* 1.3 76.7 - - + +
223A TYR* 1.3 66.1 + - - +
224A MSE 3.1 1.3 - - - -
225A GLU* 3.4 31.6 + - - +
226A ASN* 2.9 51.0 + - - +
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Residues in contact with TYR 223 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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19A PHE 4.8 0.2 + - - -
20A TRP* 2.9 48.3 + + - -
142A ALA 3.7 11.0 - - - -
143A GLN* 3.1 18.4 + - + -
146A TRP* 3.3 70.4 - + + -
219A THR 3.0 17.6 + - - +
220A THR 3.6 2.5 - - - +
222A GLN* 1.3 75.4 - - - +
224A MSE 1.3 65.5 + - + +
226A ASN* 3.9 2.3 - - - +
227A MSE 2.7 65.8 + - + +
299B TRP* 4.3 8.7 - + - -
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Residues in contact with MSE 224 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20A TRP* 3.6 44.0 - - + +
220A THR* 3.0 24.1 + - - +
221A PRO* 3.9 7.0 - - - +
222A GLN 3.1 0.2 - - - -
223A TYR* 1.3 77.1 - - + +
225A GLU* 1.3 62.5 + - - +
227A MSE 4.0 0.9 - - - +
228A GLU* 3.0 38.2 + - - +
293B PRO 5.7 0.7 - - - +
299B TRP* 3.4 39.9 - - + +
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Residues in contact with GLU 225 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221A PRO 3.2 17.2 + - - +
222A GLN* 3.4 27.0 + - - +
224A MSE 1.3 78.2 - - - +
226A ASN* 1.3 68.9 + - - +
228A GLU* 3.2 3.7 + - - +
229A GLN* 2.9 52.2 + - + +
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Residues in contact with ASN 226 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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142A ALA* 3.7 26.8 - - + +
222A GLN* 2.9 41.9 + - - +
223A TYR* 4.0 2.4 - - - +
225A GLU* 1.3 91.3 + - - +
227A MSE 1.3 62.8 + - - +
229A GLN* 3.1 19.6 + - - +
230A VAL* 3.3 17.0 + - - +
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Residues in contact with MSE 227 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A PHE* 4.2 15.0 - - + +
20A TRP* 3.7 22.7 - - + -
25A TYR* 5.3 3.6 - - - -
139A PHE* 3.7 29.8 - - - +
142A ALA* 3.5 7.1 - - - +
143A GLN* 2.7 59.7 - - + +
223A TYR* 2.7 55.2 + - + +
224A MSE 4.0 0.2 - - - +
226A ASN* 1.3 75.2 - - - +
228A GLU* 1.3 58.0 + - - +
230A VAL 3.5 0.3 + - - -
231A PHE* 2.9 31.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 228 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20A TRP* 4.2 9.1 - - - -
224A MSE 3.0 25.7 + - - +
225A GLU* 3.5 6.3 - - - +
226A ASN 3.2 0.2 - - - -
227A MSE 1.3 78.0 - - - +
229A GLN* 1.3 56.3 + - - +
231A PHE* 3.5 5.8 - - + +
232A GLU* 2.8 40.2 + - + +
288B ARG* 2.8 41.1 + - - +
293B PRO* 3.3 20.4 - - - +
----------------------------------------------------------
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Residues in contact with GLN 229 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225A GLU* 2.9 47.3 + - + +
226A ASN* 3.1 12.1 + - - +
228A GLU* 1.3 78.4 - - - +
230A VAL* 1.3 66.2 + - + +
232A GLU* 3.2 6.7 + - - +
233A GLN* 3.0 35.2 + - - +
----------------------------------------------------------
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Residues in contact with VAL 230 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A ALA* 3.9 15.3 - - - +
138A GLY* 3.8 26.2 - - - +
139A PHE* 3.6 41.7 - - + +
142A ALA* 4.8 1.1 - - + -
226A ASN 3.3 13.4 + - - +
227A MSE 3.8 2.0 - - - +
229A GLN* 1.3 73.6 - - + +
231A PHE* 1.3 66.6 + - - +
233A GLN* 3.1 26.5 + - - +
234A CYS* 3.1 17.8 + - - -
----------------------------------------------------------
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Residues in contact with PHE 231 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19A PHE* 4.2 11.2 - + + -
28A THR* 3.6 35.4 - - + -
139A PHE* 3.7 10.9 - + + -
227A MSE 2.9 21.2 + - - +
228A GLU* 3.5 8.3 - - - +
230A VAL* 1.3 72.4 - - - +
232A GLU* 1.3 62.7 + - + +
234A CYS* 3.2 6.5 + - - +
235A GLN* 2.8 71.3 + - + +
287B PHE* 4.0 10.5 - + - -
288B ARG* 3.9 31.0 - - + -
292B GLY* 4.0 3.8 - - - -
293B PRO* 3.7 38.4 - - + -
----------------------------------------------------------
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Residues in contact with GLU 232 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228A GLU* 2.8 21.7 + - + +
229A GLN* 3.2 5.8 + - - +
230A VAL 3.1 0.4 - - - -
231A PHE* 1.3 84.2 - - + +
233A GLN* 1.3 57.6 + - - +
235A GLN* 3.5 18.1 + - - +
236A GLN* 3.1 52.2 + - + +
288B ARG* 5.1 6.2 + - - -
----------------------------------------------------------
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Residues in contact with GLN 233 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229A GLN* 3.0 25.3 + - - +
230A VAL* 3.1 18.7 + - - +
232A GLU* 1.3 74.7 - - - +
234A CYS* 1.3 66.4 + - - +
236A GLN* 3.1 12.7 + - + +
237A PHE* 3.0 22.6 + - - +
240A LYS* 5.2 0.2 + - - -
----------------------------------------------------------
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Residues in contact with CYS 234 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28A THR* 3.8 28.9 - - + +
31A ARG* 3.8 9.9 + - - +
32A ILE* 4.3 14.5 - - + +
135A ALA* 3.8 29.2 - - - -
139A PHE* 4.3 8.5 - - - -
230A VAL* 3.1 16.2 + - - -
231A PHE 3.4 7.2 - - - +
233A GLN* 1.3 76.7 - - - +
235A GLN* 1.3 66.3 + - - +
237A PHE* 3.3 8.1 + - - +
238A GLU* 3.1 22.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 235 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A ARG* 2.5 31.5 - - - +
231A PHE* 2.8 59.0 + - + +
232A GLU* 3.7 20.5 - - - +
233A GLN 3.2 0.4 - - - -
234A CYS* 1.3 76.7 - - - +
236A GLN* 1.3 52.6 + - - +
238A GLU* 3.2 3.5 + - - +
239A GLU* 2.7 35.4 + - - +
284B LEU* 3.5 45.0 + - + +
287B PHE* 3.8 8.7 - - - -
288B ARG* 4.2 4.0 - - - +
----------------------------------------------------------
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Residues in contact with GLN 236 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232A GLU* 3.1 34.1 + - + +
233A GLN* 3.1 12.0 + - + +
235A GLN* 1.3 75.9 - - - +
237A PHE* 1.3 62.6 + - - +
239A GLU* 3.5 24.7 + - - +
240A LYS* 3.3 37.6 + - - +
----------------------------------------------------------
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Residues in contact with PHE 237 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32A ILE* 4.0 24.9 - - + -
116A TRP* 5.4 4.8 - + - -
120A ALA* 3.8 32.3 - - + -
121A TYR* 3.6 42.6 - + - -
131A GLU* 4.3 15.9 - - + -
233A GLN 3.0 14.4 + - - +
234A CYS* 3.8 7.9 - - - +
235A GLN 3.0 0.6 - - - -
236A GLN* 1.3 76.4 - - - +
238A GLU* 1.3 66.3 + - - +
240A LYS* 3.4 28.1 + - + +
241A ARG* 3.3 19.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 238 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A ARG* 4.0 43.2 + - + +
35A GLY* 4.9 0.5 - - - -
121A TYR* 5.3 0.7 + - - -
234A CYS 3.1 15.3 + - - +
235A GLN 3.8 3.1 - - - +
237A PHE* 1.3 79.7 - - + +
239A GLU* 1.3 64.5 + - - +
241A ARG* 2.6 45.9 + - - +
242A LEU* 3.0 36.3 + - + +
76B GLN* 5.5 1.0 + - - -
284B LEU* 4.0 13.9 - - + -
----------------------------------------------------------
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Residues in contact with GLU 239 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235A GLN 2.7 16.6 + - - +
236A GLN* 3.5 26.4 + - - +
237A PHE 3.2 0.4 - - - -
238A GLU* 1.3 76.2 - - - +
240A LYS* 1.3 64.9 + - + +
242A LEU* 4.1 4.0 - - - +
243A VAL* 3.0 46.5 + - + +
280B ALA* 4.5 8.9 - - + +
281B GLN* 3.9 26.5 + - - +
284B LEU* 3.9 19.8 - - + +
----------------------------------------------------------
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Residues in contact with LYS 240 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A TRP* 4.3 13.0 + - + +
233A GLN 5.2 0.4 + - - -
236A GLN* 3.3 30.8 + - - +
237A PHE* 3.7 37.6 - - + +
238A GLU 3.3 0.4 - - - -
239A GLU* 1.3 75.5 - - + +
241A ARG* 1.3 63.5 + - - +
243A VAL* 4.0 4.3 - - - +
244A PHE* 3.1 25.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 241 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A ARG 5.6 0.4 + - - -
35A GLY* 3.8 28.9 + - - -
38A LEU* 3.0 30.2 - - - +
39A CYS* 5.4 3.6 - - - -
116A TRP* 3.8 30.5 - - + -
121A TYR* 4.1 7.6 - - - +
237A PHE* 3.3 11.1 + - + +
238A GLU* 2.6 56.4 + - - +
239A GLU 3.1 0.6 - - - -
240A LYS* 1.3 81.9 - - - +
242A LEU* 1.3 69.8 + - - +
244A PHE* 3.5 4.9 - - + +
245A LEU* 2.8 39.1 + - + +
76B GLN* 2.7 28.5 + - - +
----------------------------------------------------------
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Residues in contact with LEU 242 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238A GLU* 3.0 35.2 + - + +
239A GLU* 4.1 2.2 - - - +
241A ARG* 1.3 102.7 - - - +
243A VAL* 1.3 65.9 + - - +
245A LEU* 3.2 7.0 + - + +
246A LYS* 3.0 23.0 + - - +
76B GLN* 4.4 11.0 - - - +
80B LEU* 4.2 24.7 - - + +
280B ALA* 4.2 35.2 - - + +
283B ASP* 4.4 15.3 - - + +
284B LEU* 4.4 9.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL 243 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239A GLU* 3.0 37.7 + - + +
240A LYS* 4.0 4.7 - - - +
242A LEU* 1.3 76.3 - - - +
244A PHE* 1.3 64.3 + - - +
246A LYS* 3.5 9.8 + - - +
247A GLU* 3.3 18.5 + - - +
280B ALA* 4.3 12.1 - - + -
----------------------------------------------------------
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Residues in contact with PHE 244 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39A CYS* 5.5 4.3 - - - -
42A LEU* 5.8 2.2 - - + -
112A LYS* 3.6 32.8 - - + -
113A VAL* 3.9 15.5 - - + -
116A TRP* 3.4 64.4 - + + +
240A LYS 3.1 19.4 + - - +
241A ARG* 3.5 7.0 - - + +
243A VAL* 1.3 76.8 - - - +
245A LEU* 1.3 65.4 + - + +
247A GLU* 2.9 28.2 + - - +
248A VAL* 3.0 39.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 245 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LEU* 6.0 0.9 - - + +
42A LEU* 3.6 32.1 - - + -
241A ARG* 2.8 33.1 + - + +
242A LEU* 3.2 7.8 + - + +
244A PHE* 1.3 79.8 - - + +
246A LYS* 1.3 64.3 + - - +
247A GLU 3.0 0.2 + - - -
248A VAL* 3.0 5.4 + - - +
249A LEU* 2.9 41.5 + - + +
76B GLN* 4.2 15.3 - - - +
80B LEU* 3.5 39.5 - - + +
84B TRP* 5.7 10.8 - - + -
----------------------------------------------------------
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Residues in contact with LYS 246 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242A LEU 3.0 12.7 + - - +
243A VAL* 3.5 13.2 - - - +
244A PHE 3.2 0.2 - - - -
245A LEU* 1.3 76.8 - - - +
247A GLU* 1.3 59.3 + - - +
249A LEU* 3.7 7.3 + - - +
250A LEU* 3.1 40.6 + - + +
80B LEU* 4.5 16.4 - - + +
275B ILE* 3.5 24.9 - - + +
276B ARG* 3.1 21.8 + - - +
278B ALA 2.8 29.2 + - - +
279B ASP* 5.0 0.6 - - - +
280B ALA 6.1 1.1 - - - +
----------------------------------------------------------
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Residues in contact with GLU 247 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A LYS* 3.1 31.4 + - - +
243A VAL 3.3 10.2 + - - +
244A PHE* 2.9 19.5 + - - +
246A LYS* 1.3 79.3 - - - +
248A VAL* 1.3 63.1 + - - +
249A LEU 3.2 0.2 - - - -
250A LEU* 3.6 8.3 + - + +
251A ASP* 3.2 26.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 248 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A LEU* 4.2 11.7 - - + -
109A ASP* 5.0 10.8 - - + +
112A LYS* 4.4 11.0 - - + -
113A VAL* 3.9 20.2 - - + -
244A PHE* 3.0 50.2 + - + +
245A LEU* 3.0 6.5 + - - +
247A GLU* 1.3 76.3 - - - +
249A LEU* 1.3 59.2 + - - +
251A ASP* 2.9 25.9 + - - +
252A ILE* 2.9 36.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 249 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A LEU* 4.3 15.9 - - + -
245A LEU* 2.9 30.3 + - + +
246A LYS* 3.7 7.2 - - - +
248A VAL* 1.3 77.5 - - - +
250A LEU* 1.3 56.6 + - - +
252A ILE* 3.4 16.7 + - + +
253A LYS* 3.0 21.3 + - - +
80B LEU* 4.5 13.5 - - + -
83B ALA* 3.9 15.9 - - + +
84B TRP* 3.6 39.7 - - + +
87B ILE* 4.2 21.5 - - + +
275B ILE* 3.5 21.7 - - + +
----------------------------------------------------------
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Residues in contact with LEU 250 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246A LYS* 3.1 40.4 + - + +
247A GLU* 3.9 9.0 - - + +
248A VAL 3.4 0.2 - - - -
249A LEU* 1.3 73.8 - - - +
251A ASP* 1.3 60.5 + - - +
253A LYS* 3.2 9.5 + - + +
254A ARG* 2.8 50.3 + - - +
272B GLU* 4.0 28.3 - - + +
275B ILE* 3.6 26.9 - - + +
276B ARG* 4.4 27.1 - - + +
----------------------------------------------------------
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Residues in contact with ASP 251 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A ASP* 3.7 16.2 - - - +
112A LYS* 3.0 36.6 + - - +
247A GLU* 3.2 15.5 + - - +
248A VAL* 2.9 11.2 + - - +
250A LEU* 1.3 75.1 - - - +
252A ILE* 1.3 61.3 + - - +
254A ARG* 3.0 27.8 + - - +
255A HIS* 2.9 42.6 + - + -
----------------------------------------------------------
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Residues in contact with ILE 252 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42A LEU* 4.2 4.0 - - + -
46A VAL* 3.9 25.1 - - + -
105A LEU* 4.4 9.1 - - + +
109A ASP* 3.8 26.2 - - + +
248A VAL* 2.9 37.7 + - + +
249A LEU* 3.6 20.9 - - + +
251A ASP* 1.3 74.8 - - - +
253A LYS* 1.3 59.1 + - - +
255A HIS* 3.0 3.9 + - - +
256A LEU* 2.8 46.0 + - + +
87B ILE* 4.1 21.3 - - + -
----------------------------------------------------------
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Residues in contact with LYS 253 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249A LEU 3.0 17.2 + - - +
250A LEU* 3.6 8.3 - - + +
252A ILE* 1.3 77.6 - - - +
254A ARG* 1.3 65.0 + - + +
256A LEU* 4.0 4.4 - - - +
257A ASN* 3.1 34.6 + - - +
260A GLU* 2.8 25.5 + - - -
268B TYR* 3.6 25.1 + - + +
269B ARG* 6.0 0.2 - - - +
271B LEU* 3.5 39.7 - - + -
272B GLU* 3.2 40.6 + - + +
275B ILE* 4.0 8.5 - - + -
----------------------------------------------------------
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Residues in contact with ARG 254 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250A LEU* 2.8 36.4 + - - +
251A ASP* 3.0 42.4 + - - +
253A LYS* 1.3 81.9 - - + +
255A HIS* 1.3 68.9 + - + +
257A ASN 3.7 9.7 + - - +
260A GLU* 3.7 35.9 + - + +
272B GLU* 5.2 4.6 + - - -
276B ARG* 4.6 11.1 - - - +
----------------------------------------------------------
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Residues in contact with HIS 255 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A VAL* 3.3 25.3 - - - +
104A ASN* 3.8 39.3 + - + +
105A LEU* 4.4 9.6 - - + -
108A GLU* 4.2 16.8 - - + +
109A ASP* 2.8 38.2 + - - +
251A ASP* 2.9 27.8 + - + +
252A ILE 3.0 4.2 + - - +
254A ARG* 1.3 86.6 - - + +
256A LEU* 1.3 62.1 + - - +
257A ASN 3.7 1.4 + - - -
258A LEU* 5.0 1.2 - - - +
----------------------------------------------------------
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Residues in contact with LEU 256 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49A ARG* 3.8 39.4 + - + +
53A GLU* 4.8 2.0 - - - +
101A VAL* 4.2 20.9 - - + +
105A LEU* 4.4 9.2 - - + -
252A ILE* 2.8 37.2 + - + +
253A LYS* 4.1 4.9 - - - +
254A ARG 3.4 0.2 - - - -
255A HIS* 1.3 73.3 - - - +
257A ASN* 1.3 58.4 + - - +
258A LEU* 3.1 14.8 + - - +
63B TRP* 5.7 0.2 - - + -
87B ILE* 4.2 10.8 - - + -
90B GLU* 3.4 31.2 - - + +
264B TYR* 4.0 2.8 + - - -
268B TYR* 3.7 23.9 + - + +
271B LEU* 5.2 1.8 - - + -
----------------------------------------------------------
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Residues in contact with ASN 257 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253A LYS* 3.1 21.8 + - - +
254A ARG 3.7 3.3 + - - +
255A HIS 3.4 2.7 - - - -
256A LEU* 1.3 74.7 - - - +
258A LEU* 1.3 64.6 + - - +
259A ALA* 2.9 30.4 + - - +
260A GLU* 2.8 46.2 + - + +
261A ASN* 4.1 3.1 + - - +
265B ILE* 5.9 0.9 - - - +
268B TYR* 3.3 43.6 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il