Contacts of the helix formed by residues 188 - 257 (chain G) in PDB entry 3Q84
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLN 188 (chain G).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174G GLU* 4.0 19.7 + - - +
175G MSE 3.1 41.5 - - + +
185G PRO* 3.2 22.3 + - + +
186G GLU* 3.7 5.0 + - + +
187G GLN* 1.3 67.4 - - - +
189G LYS* 1.3 64.7 + - - +
190G LYS 3.0 4.2 + - - -
191G LEU* 3.2 21.8 + - + +
192G GLN* 3.0 23.4 + - + +
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Residues in contact with LYS 189 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186G GLU* 5.0 1.0 + - - +
187G GLN* 3.3 9.1 - - + +
188G GLN* 1.3 76.3 - - - +
190G LYS* 1.3 88.5 + - - +
192G GLN* 4.1 8.7 - - - -
193G ASP* 2.8 21.5 + - + +
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Residues in contact with LYS 190 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
187G GLN* 3.9 31.0 + - + +
188G GLN 3.0 2.2 + - - -
189G LYS* 1.3 132.8 + - - +
191G LEU* 1.3 64.2 + - - +
193G ASP* 3.2 22.4 - - - +
194G LYS* 2.9 27.4 + - - +
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Residues in contact with LEU 191 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170G ALA 4.7 2.2 - - - +
173G ARG* 2.7 42.2 - - + +
174G GLU* 2.7 36.8 - - + -
188G GLN* 3.2 23.0 + - + +
190G LYS* 1.3 80.2 - - - +
192G GLN* 1.3 104.9 + - + +
194G LYS* 3.0 26.8 - - + +
195G VAL* 3.0 10.1 + - + +
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Residues in contact with GLN 192 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174G GLU* 4.3 11.7 - - - +
188G GLN* 3.0 16.8 + - + +
189G LYS* 3.8 8.3 - - - +
191G LEU* 1.3 94.5 - - + +
193G ASP* 1.3 62.5 + - - +
195G VAL* 3.2 23.6 - - - +
196G ASP* 3.3 9.6 - - - +
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Residues in contact with ASP 193 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189G LYS* 2.8 15.5 + - + +
190G LYS* 3.2 26.6 + - - +
192G GLN* 1.3 76.5 - - - +
194G LYS* 1.3 67.1 + - - +
196G ASP* 2.9 21.6 + - - +
197G LYS* 3.1 30.5 + - - +
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Residues in contact with LYS 194 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170G ALA* 4.8 12.3 - - + -
173G ARG* 6.3 0.8 - - - +
190G LYS* 2.9 18.9 + - - +
191G LEU* 3.0 22.9 - - + +
193G ASP* 1.3 83.3 - - - +
195G VAL* 1.3 62.0 + - + +
196G ASP 3.2 0.2 + - - -
197G LYS* 3.3 7.5 + - - +
198G CYS* 3.2 22.3 + - - +
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Residues in contact with VAL 195 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167G GLU* 5.7 0.4 - - + +
170G ALA* 2.9 34.8 - - + +
171G MSE 4.0 33.1 - - + +
174G GLU* 4.3 16.6 - - + +
191G LEU 3.0 13.7 + - - +
192G GLN* 3.2 13.5 - - - +
194G LYS* 1.3 75.5 - - - +
196G ASP* 1.3 74.4 + - - +
198G CYS* 3.0 10.6 + - + +
199G LYS* 2.9 21.7 + - - +
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Residues in contact with ASP 196 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192G GLN* 3.3 16.7 + - - +
193G ASP* 2.9 15.0 + - - +
195G VAL* 1.3 87.9 - - - +
197G LYS* 1.3 75.2 + - - +
199G LYS* 3.2 10.4 + - - +
200G GLN* 3.0 24.4 + - - +
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Residues in contact with LYS 197 (chain G).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193G ASP* 3.1 23.8 + - - +
194G LYS* 3.9 7.9 - - - +
195G VAL 3.3 0.4 - - - -
196G ASP* 1.3 101.2 + - - +
198G CYS* 1.3 65.7 + - - +
200G GLN* 3.1 38.4 + - - +
201G ASP* 3.0 26.0 + - - +
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Residues in contact with CYS 198 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163G ALA 4.6 2.3 - - - +
166G GLU* 4.0 36.8 - - - -
167G GLU* 4.0 17.5 - - + -
170G ALA* 4.0 14.1 - - + -
194G LYS* 3.2 11.3 + - - +
195G VAL* 3.0 12.5 + - - +
197G LYS* 1.3 76.9 - - - +
199G LYS* 1.3 64.0 + - - +
201G ASP* 3.1 12.3 + - - +
202G VAL* 3.0 24.3 + - - +
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Residues in contact with LYS 199 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167G GLU* 2.4 34.0 - - - +
171G MSE 4.5 13.8 - - + +
195G VAL 2.9 11.6 + - - +
196G ASP* 3.5 15.0 - - - +
198G CYS* 1.3 73.8 - - - +
200G GLN* 1.3 67.9 + - - +
202G VAL* 3.1 21.6 + - + +
203G GLN* 3.4 10.7 + - + +
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Residues in contact with GLN 200 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196G ASP 3.0 15.6 + - - +
197G LYS* 3.4 40.1 + - - +
199G LYS* 1.3 79.1 - - + +
201G ASP* 1.3 62.7 + - - +
203G GLN* 3.2 8.2 + - - +
204G LYS* 3.0 43.1 + - + +
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Residues in contact with ASP 201 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163G ALA* 4.2 16.8 - - + +
197G LYS 3.0 14.4 + - - +
198G CYS* 3.2 15.4 - - - +
200G GLN* 1.3 80.8 - - - +
202G VAL* 1.3 62.4 + - - +
204G LYS* 3.7 9.8 + - - +
205G THR* 3.1 27.0 + - - -
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Residues in contact with VAL 202 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160G TYR* 4.8 7.6 - - + -
163G ALA* 3.5 32.5 - - + +
164G CYS* 4.1 13.9 - - - +
167G GLU* 4.1 20.9 - - - +
198G CYS 3.0 9.8 + - - +
199G LYS* 3.1 16.1 + - + +
201G ASP* 1.3 77.7 - - - +
203G GLN* 1.3 60.6 + - - +
205G THR* 3.3 7.6 - - + +
206G GLN* 3.3 36.7 + - - +
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Residues in contact with GLN 203 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
199G LYS* 3.4 8.3 + - + +
200G GLN* 3.2 5.2 + - - +
202G VAL* 1.3 75.7 - - - +
204G LYS* 1.3 82.7 + - - +
205G THR 3.1 0.3 + - - -
206G GLN* 3.2 5.7 + - - +
207G GLU* 2.9 31.5 + - + +
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Residues in contact with LYS 204 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200G GLN* 3.0 44.5 + - + +
201G ASP* 4.0 10.8 - - - +
203G GLN* 1.3 97.9 - - - +
205G THR* 1.3 61.1 + - - +
207G GLU* 3.5 8.2 + - - +
208G LYS* 3.2 25.8 + - - +
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Residues in contact with THR 205 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156G ALA* 4.4 3.3 - - - +
159G ALA* 3.5 29.5 + - - +
160G TYR* 3.4 30.6 - - + +
163G ALA* 3.8 14.1 - - + +
201G ASP 3.1 13.4 + - - +
202G VAL* 3.3 14.8 - - - +
203G GLN 3.1 0.8 - - - -
204G LYS* 1.3 79.9 - - - +
206G GLN* 1.3 60.2 + - - +
208G LYS* 3.8 6.3 + - - +
209G TYR* 3.3 23.0 + - - +
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Residues in contact with GLN 206 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160G TYR* 3.2 38.8 + - + -
202G VAL* 3.3 22.4 - - - +
203G GLN* 3.2 5.1 + - - +
205G THR* 1.3 77.9 - - - +
207G GLU* 1.3 59.5 + - - +
208G LYS 3.2 0.9 - - - -
209G TYR* 3.8 3.7 - - + +
210G GLU* 2.9 56.0 + - - +
302H PHE* 4.4 13.7 - - + -
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Residues in contact with GLU 207 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203G GLN* 2.9 25.1 + - + +
204G LYS* 3.6 9.4 - - - +
206G GLN* 1.3 76.2 - - - +
208G LYS* 1.3 59.3 + - + +
210G GLU* 3.1 9.2 + - - +
211G LYS* 2.8 62.1 + - + +
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Residues in contact with LYS 208 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156G ALA* 4.6 10.7 - - + +
204G LYS 3.2 15.2 + - - +
205G THR* 3.8 6.7 + - - +
206G GLN 3.2 0.2 - - - -
207G GLU* 1.3 77.5 - - + +
209G TYR* 1.3 65.9 + - - +
211G LYS* 3.1 9.5 + - + +
212G VAL* 3.0 47.6 + - - +
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Residues in contact with TYR 209 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153G LEU* 4.2 13.0 - - + -
156G ALA* 3.9 17.9 - - + +
157G LYS* 3.7 41.6 - - + +
160G TYR* 4.4 19.3 - + + -
205G THR 3.3 16.4 + - - +
206G GLN* 3.9 5.6 - - - +
207G GLU 3.4 0.2 - - - -
208G LYS* 1.3 76.8 - - - +
210G GLU* 1.3 62.6 + - - +
212G VAL* 3.3 1.5 + - - +
213G LEU* 3.1 36.5 + - + +
301H GLN 3.8 4.5 + - - -
302H PHE* 3.6 44.8 - + - -
303H GLU* 2.8 40.1 + - - +
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Residues in contact with GLU 210 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206G GLN* 2.9 46.1 + - - +
207G GLU* 3.6 6.5 - - - +
209G TYR* 1.3 76.2 - - - +
211G LYS* 1.3 65.3 + - - +
212G VAL 3.3 0.3 + - - -
213G LEU* 3.4 10.4 + - + +
214G GLU* 3.3 20.3 + - - +
302H PHE* 4.3 22.1 - - + -
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Residues in contact with LYS 211 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207G GLU* 2.8 49.7 + - + +
208G LYS* 3.8 9.2 - - + +
210G GLU* 1.3 77.8 - - - +
212G VAL* 1.3 61.9 + - + +
214G GLU* 3.4 10.1 + - - +
215G ASP* 3.3 24.1 + - - +
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Residues in contact with VAL 212 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149G LYS* 4.4 6.3 - - + +
152G GLU* 4.3 15.0 - - + +
153G LEU* 3.8 37.7 - - + +
156G ALA* 4.5 9.6 - - + -
208G LYS* 3.0 36.2 + - - +
209G TYR* 3.9 4.0 - - - +
210G GLU 3.1 0.2 - - - -
211G LYS* 1.3 78.7 - - + +
213G LEU* 1.3 67.2 + - - +
215G ASP* 3.1 9.8 + - + +
216G VAL* 2.9 32.2 + - + +
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Residues in contact with LEU 213 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153G LEU* 3.2 32.7 - - + +
209G TYR* 3.1 28.1 + - + +
210G GLU* 3.6 10.3 - - + +
211G LYS 3.3 0.2 - - - -
212G VAL* 1.3 79.3 - - - +
214G GLU* 1.3 60.0 + - - +
216G VAL* 3.6 4.7 - - - +
217G GLY* 3.3 17.5 + - - -
300H PRO* 4.8 5.6 - - + +
301H GLN* 4.3 11.9 - - - +
302H PHE* 3.5 50.7 - - + +
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Residues in contact with GLU 214 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
210G GLU 3.3 9.7 + - - +
211G LYS* 3.6 12.9 - - - +
212G VAL 3.1 0.6 - - - -
213G LEU* 1.3 78.2 - - - +
215G ASP* 1.3 65.8 - - - +
217G GLY* 3.4 1.8 + - - -
218G LYS* 3.1 49.9 + - + +
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Residues in contact with ASP 215 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149G LYS* 4.2 23.7 - - + +
211G LYS 3.3 11.8 + - - +
212G VAL* 3.1 12.8 + - + +
214G GLU* 1.3 79.5 - - - +
216G VAL* 1.3 62.9 + - - +
218G LYS* 3.4 13.0 + - - +
219G THR* 2.9 32.6 + - - +
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Residues in contact with VAL 216 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146G TRP* 3.5 28.5 - - + -
149G LYS* 4.4 22.4 - - + +
150G MSE 4.9 4.3 - - - -
153G LEU* 4.3 9.6 - - + -
212G VAL* 2.9 29.1 + - + +
213G LEU* 3.6 11.2 - - - +
215G ASP* 1.3 77.1 - - - +
217G GLY* 1.3 53.0 + - - +
219G THR* 3.0 15.3 + - - -
220G THR* 2.6 29.6 - - + +
300H PRO* 4.0 21.3 - - + -
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Residues in contact with GLY 217 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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213G LEU 3.3 10.9 + - - -
214G GLU* 3.4 3.5 + - - -
215G ASP 3.2 0.4 - - - -
216G VAL* 1.3 79.4 - - - +
218G LYS* 1.3 64.3 + - - +
220G THR* 3.3 19.4 + - - +
221G PRO* 3.5 8.7 - - - +
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Residues in contact with LYS 218 (chain G).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214G GLU* 3.1 38.1 + - + +
215G ASP* 3.8 14.8 - - - +
216G VAL 3.3 0.2 - - - -
217G GLY* 1.3 77.5 - - - +
219G THR* 1.3 63.4 + - + +
221G PRO* 3.7 13.2 - - - +
222G GLN 5.1 0.5 + - - -
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Residues in contact with THR 219 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146G TRP* 4.3 8.9 - - - -
149G LYS* 3.6 30.5 + - - +
215G ASP* 2.9 19.1 + - - +
216G VAL* 3.0 12.0 + - - -
218G LYS* 1.3 79.1 - - + +
220G THR* 1.3 65.1 + - - +
221G PRO 3.3 2.9 - - - -
222G GLN* 3.4 9.6 + - + +
223G TYR* 3.3 18.9 + - - +
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Residues in contact with THR 220 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146G TRP* 3.5 27.1 - - + -
216G VAL* 2.6 28.0 - - + +
217G GLY* 3.3 16.6 - - - +
219G THR* 1.3 75.8 - - - +
221G PRO* 1.3 71.2 - - - +
223G TYR* 3.0 3.3 + - - +
224G MSE 2.9 53.9 + - - +
299H TRP* 4.7 9.0 - - + -
300H PRO* 5.9 1.8 - - + -
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Residues in contact with PRO 221 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217G GLY 3.5 13.5 - - - +
218G LYS* 3.7 9.2 - - - +
219G THR 3.6 1.8 - - - -
220G THR* 1.3 99.5 - - - +
222G GLN* 1.3 61.5 + - - +
224G MSE 3.9 10.5 - - + +
225G GLU* 3.2 21.8 + - - +
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Residues in contact with GLN 222 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218G LYS 5.1 0.2 + - - -
219G THR* 3.4 11.8 + - + +
220G THR 3.2 0.8 - - - -
221G PRO* 1.3 76.5 - - - +
223G TYR* 1.3 65.6 + - - +
225G GLU* 3.3 14.4 + - - +
226G ASN* 2.9 47.1 + - - +
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Residues in contact with TYR 223 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19G PHE 4.9 0.5 + - - -
20G TRP* 3.0 42.9 + + - -
142G ALA 4.0 11.9 - - - -
143G GLN* 2.7 42.0 + - - -
146G TRP* 3.5 64.2 - + + -
219G THR 3.3 11.3 + - - +
220G THR 3.0 9.2 + - - +
222G GLN* 1.3 80.1 - - - +
224G MSE 1.3 61.3 - - - +
226G ASN* 3.4 5.3 + - - +
227G MSE 3.1 32.2 + - - +
299H TRP* 4.0 14.4 - + - -
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Residues in contact with MSE 224 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20G TRP* 3.4 37.1 - - + -
220G THR* 2.9 44.7 + - - +
221G PRO* 3.9 9.0 - - + +
223G TYR* 1.3 77.0 - - + +
225G GLU* 1.3 57.7 + - - +
228G GLU* 3.1 32.1 + - - +
299H TRP* 3.1 44.9 - - + +
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Residues in contact with GLU 225 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221G PRO 3.2 15.2 + - - +
222G GLN* 3.6 20.0 - - - +
224G MSE 1.3 77.3 - - - +
226G ASN* 1.3 65.1 + - - +
228G GLU* 3.3 12.7 + - - +
229G GLN* 3.2 53.2 + - - +
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Residues in contact with ASN 226 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142G ALA* 3.4 29.5 - - + +
145G PRO* 6.0 1.6 - - - +
222G GLN* 2.9 43.9 + - - +
223G TYR* 4.0 3.8 - - - +
224G MSE 3.4 0.2 - - - -
225G GLU* 1.3 78.1 - - - +
227G MSE 1.3 64.7 + - + +
229G GLN* 3.3 19.3 + - - +
230G VAL* 3.4 17.8 + - - +
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Residues in contact with MSE 227 (chain G).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19G PHE* 3.6 33.8 - - + +
20G TRP* 3.6 21.1 - - + -
25G TYR* 5.0 3.8 - - - -
139G PHE* 3.8 26.8 - - + +
142G ALA* 2.7 54.1 - - + +
143G GLN* 3.7 18.8 - - - +
223G TYR* 3.1 30.7 + - + +
224G MSE 3.7 0.2 - - - +
226G ASN* 1.3 80.3 - - - +
228G GLU* 1.3 57.3 + - - +
230G VAL 3.5 1.4 + - - -
231G PHE* 3.1 28.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 228 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20G TRP* 4.3 5.7 - - - -
224G MSE 3.1 21.0 + - - +
225G GLU* 3.3 17.9 - - - +
227G MSE 1.3 76.4 - - - +
229G GLN* 1.3 67.0 + - - +
231G PHE* 3.9 6.5 - - - +
232G GLU* 3.0 27.8 + - + +
288H ARG* 2.5 43.1 + - - -
293H PRO* 3.8 18.4 - - - +
----------------------------------------------------------
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Residues in contact with GLN 229 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225G GLU* 3.2 40.3 + - - +
226G ASN* 3.3 16.5 + - - +
228G GLU* 1.3 81.2 - - - +
230G VAL* 1.3 64.5 + - + +
232G GLU* 3.3 8.9 + - - +
233G GLN* 2.9 32.0 + - - +
----------------------------------------------------------
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Residues in contact with VAL 230 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135G ALA* 4.3 5.8 - - - +
138G GLY* 3.6 36.3 - - - +
139G PHE* 3.4 40.6 - - + -
142G ALA* 4.6 3.4 - - + -
226G ASN 3.4 13.1 + - - +
227G MSE 3.9 2.0 - - - +
228G GLU 3.3 0.4 - - - -
229G GLN* 1.3 75.7 - - + +
231G PHE* 1.3 64.5 + - - +
233G GLN* 3.3 19.9 + - - +
234G CYS* 3.3 24.7 + - - -
----------------------------------------------------------
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Residues in contact with PHE 231 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19G PHE* 4.5 6.1 - + + -
28G THR* 3.9 30.7 - - + -
139G PHE* 4.0 9.6 - + + -
227G MSE 3.1 17.2 + - - +
228G GLU* 3.9 6.7 - - - +
230G VAL* 1.3 77.9 - - - +
232G GLU* 1.3 62.5 + - - +
234G CYS* 3.3 4.6 + - - +
235G GLN* 2.9 66.0 + - + +
287H PHE* 3.9 15.3 - + - -
288H ARG* 3.7 45.5 - - + -
292H GLY* 4.2 2.2 - - - -
293H PRO* 3.7 28.7 - - + -
----------------------------------------------------------
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Residues in contact with GLU 232 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228G GLU* 3.0 21.2 + - - +
229G GLN* 3.4 8.7 - - - +
231G PHE* 1.3 79.0 - - - +
233G GLN* 1.3 64.0 + - - +
235G GLN* 3.1 19.5 + - - +
236G GLN* 3.0 46.3 + - - +
288H ARG* 5.0 7.1 + - - -
----------------------------------------------------------
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Residues in contact with GLN 233 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134G GLU* 5.2 11.3 + - - +
138G GLY* 6.2 1.4 - - - -
229G GLN* 2.9 26.0 + - - +
230G VAL* 3.3 25.5 + - - +
231G PHE 3.4 0.4 - - - -
232G GLU* 1.3 75.7 - - - +
234G CYS* 1.3 61.6 + - - +
236G GLN* 3.4 12.1 + - - +
237G PHE* 3.2 22.2 + - - +
----------------------------------------------------------
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Residues in contact with CYS 234 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28G THR* 3.9 29.6 - - + -
31G ARG* 4.0 6.0 + - - +
32G ILE* 4.6 13.1 - - + +
135G ALA* 4.1 26.2 - - - -
139G PHE* 4.2 8.3 - - - -
230G VAL* 3.3 16.2 - - - -
231G PHE 3.3 8.2 + - - +
232G GLU 3.2 0.4 - - - -
233G GLN* 1.3 78.0 - - - +
235G GLN* 1.3 59.5 + - - +
237G PHE* 3.2 8.1 + - - +
238G GLU* 2.9 29.6 + - - +
----------------------------------------------------------
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Residues in contact with GLN 235 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31G ARG* 2.8 45.0 - - - +
231G PHE* 2.9 51.8 + - + +
232G GLU* 3.1 23.5 + - - +
234G CYS* 1.3 75.7 - - - +
236G GLN* 1.3 58.4 + - + +
238G GLU 3.2 0.7 + - - -
239G GLU* 2.9 26.5 + - - +
284H LEU* 3.1 48.2 - - + +
288H ARG* 4.2 3.3 - - - +
----------------------------------------------------------
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Residues in contact with GLN 236 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232G GLU* 3.0 40.6 + - - +
233G GLN* 3.7 10.5 - - - +
234G CYS 3.1 0.2 - - - -
235G GLN* 1.3 74.6 - - + +
237G PHE* 1.3 67.4 - - - +
239G GLU* 3.1 19.0 - - - +
240G LYS* 3.0 33.8 + - - +
----------------------------------------------------------
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Residues in contact with PHE 237 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32G ILE* 4.1 22.2 - - + -
116G TRP* 5.5 5.3 - + - -
120G ALA* 3.6 35.7 - - + -
121G TYR* 3.8 33.0 - + - -
131G GLU* 4.0 19.1 - - + -
233G GLN 3.2 11.6 + - - +
234G CYS* 3.6 10.3 - - - +
236G GLN* 1.3 80.2 - - - +
238G GLU* 1.3 64.4 + - - +
240G LYS* 3.4 30.1 + - + +
241G ARG* 3.4 12.6 + - + +
----------------------------------------------------------
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Residues in contact with GLU 238 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31G ARG* 3.7 33.3 + - - +
32G ILE* 5.9 0.9 - - - -
35G GLY* 5.6 0.2 - - - -
121G TYR* 5.6 0.3 + - - -
234G CYS 2.9 14.0 + - - +
235G GLN 3.2 7.6 + - - +
237G PHE* 1.3 77.0 - - - +
239G GLU* 1.3 53.5 + - - +
241G ARG* 2.7 46.6 + - - +
242G LEU* 2.7 54.4 + - + +
77H TYR* 3.0 30.7 + - - +
284H LEU* 3.7 9.9 - - + -
----------------------------------------------------------
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Residues in contact with GLU 239 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235G GLN 2.9 12.2 + - - +
236G GLN* 3.1 23.4 - - - +
238G GLU* 1.3 73.8 - - - +
240G LYS* 1.3 65.1 + - + +
242G LEU* 2.8 8.2 + - - +
243G VAL* 2.8 35.4 + - + +
280H ALA* 4.4 13.0 - - + +
281H GLN* 3.0 26.0 - - - +
284H LEU* 3.6 22.5 - - + +
----------------------------------------------------------
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Residues in contact with LYS 240 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116G TRP* 4.2 13.9 + - + +
236G GLN* 3.0 22.6 + - - +
237G PHE* 3.4 21.3 + - + +
239G GLU* 1.3 79.1 - - + +
241G ARG* 1.3 55.6 + - - +
243G VAL* 3.5 5.7 + - - +
244G PHE* 3.0 28.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 241 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31G ARG* 5.8 1.0 + - - +
35G GLY* 3.9 26.2 + - - -
38G LEU* 2.9 28.8 - - - +
39G CYS* 5.3 3.7 - - - -
116G TRP* 3.6 33.9 - - + -
121G TYR* 4.1 8.5 - - - +
237G PHE* 3.4 9.3 + - + +
238G GLU* 2.7 47.8 + - - +
240G LYS* 1.3 78.7 - - - +
242G LEU* 1.3 72.3 + - - +
244G PHE* 3.8 2.1 - - + +
245G LEU* 2.9 38.0 + - + +
76H GLN* 2.5 30.9 + - - -
77H TYR* 5.0 2.0 - - - -
----------------------------------------------------------
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Residues in contact with LEU 242 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238G GLU* 2.7 37.9 + - + +
239G GLU 2.8 3.6 + - - +
241G ARG* 1.3 109.1 - - - +
243G VAL* 1.3 56.1 + - - +
245G LEU* 3.5 4.7 + - + +
246G LYS* 3.0 28.8 + - - +
76H GLN* 4.6 4.7 - - - +
77H TYR* 4.6 2.7 - - + +
80H LEU* 4.2 29.0 - - + +
280H ALA* 3.9 36.1 - - + +
283H ASP* 4.2 17.7 - - + +
284H LEU* 4.3 7.6 - - + -
----------------------------------------------------------
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Residues in contact with VAL 243 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239G GLU* 2.8 27.2 + - + +
240G LYS* 3.9 4.7 - - - +
242G LEU* 1.3 73.9 - - - +
244G PHE* 1.3 67.4 + - - +
246G LYS* 3.5 7.6 + - + +
247G GLU* 3.1 25.9 + - + +
280H ALA* 4.2 17.3 - - + -
----------------------------------------------------------
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Residues in contact with PHE 244 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39G CYS* 6.2 2.0 - - - -
42G LEU* 5.9 2.2 - - + -
112G LYS* 3.5 26.5 - - + -
113G VAL* 3.5 32.8 - - + -
116G TRP* 3.4 60.3 - + + +
240G LYS 3.0 20.0 + - - +
241G ARG* 3.8 5.2 - - + +
242G LEU 3.4 0.2 - - - -
243G VAL* 1.3 75.8 - - - +
245G LEU* 1.3 70.2 + - + +
247G GLU* 3.0 15.9 + - - +
248G VAL* 2.9 44.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 245 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42G LEU* 3.7 32.1 - - + -
241G ARG* 2.9 27.8 + - + +
242G LEU* 3.8 6.1 - - + +
244G PHE* 1.3 85.1 - - + +
246G LYS* 1.3 56.4 + - - +
248G VAL* 2.9 5.2 + - - +
249G LEU* 2.8 46.8 + - + +
76H GLN* 4.0 17.5 - - + +
80H LEU* 3.7 37.2 - - + +
84H TRP* 5.8 9.4 - - + -
----------------------------------------------------------
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Residues in contact with LYS 246 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242G LEU 3.0 17.3 + - - +
243G VAL* 3.8 7.9 - - + +
245G LEU* 1.3 75.3 - - - +
247G GLU* 1.3 67.2 + - - +
248G VAL 3.1 0.7 + - - -
249G LEU* 3.1 8.6 + - - +
250G LEU* 3.1 30.7 + - + +
80H LEU* 4.4 15.0 - - + +
275H ILE* 3.6 23.9 - - + +
276H ARG* 3.1 22.6 + - - +
278H ALA* 2.9 30.0 + - + +
279H ASP* 5.0 2.5 - - - +
280H ALA 5.9 1.3 - - - +
----------------------------------------------------------
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Residues in contact with GLU 247 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112G LYS* 3.1 30.1 + - - +
243G VAL* 3.1 14.6 + - + +
244G PHE* 3.0 19.8 + - - +
246G LYS* 1.3 79.3 - - - +
248G VAL* 1.3 55.9 + - - +
250G LEU* 3.0 25.8 + - - +
251G ASP* 3.0 19.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 248 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42G LEU* 4.4 9.2 - - + -
46G VAL* 6.3 0.2 - - + -
109G ASP* 4.7 8.1 - - + +
112G LYS* 4.1 12.1 - - + +
113G VAL* 3.9 21.1 - - + -
244G PHE* 2.9 51.2 + - + +
245G LEU* 2.9 6.9 + - - +
247G GLU* 1.3 71.9 - - - +
249G LEU* 1.3 62.2 + - - +
251G ASP* 3.0 14.0 + - + +
252G ILE* 2.8 42.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU 249 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42G LEU* 4.5 9.6 - - + -
245G LEU* 2.8 26.9 + - + +
246G LYS* 3.1 6.7 + - - +
248G VAL* 1.3 76.1 - - - +
250G LEU* 1.3 56.0 - - - +
252G ILE* 3.1 16.2 + - + +
253G LYS 2.9 24.1 + - - -
80H LEU* 4.2 14.8 - - + +
83H ALA* 3.9 18.6 - - + +
84H TRP* 3.8 40.8 - - + +
87H ILE* 3.8 22.6 - - + +
275H ILE* 3.6 26.5 - - + +
----------------------------------------------------------
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Residues in contact with LEU 250 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246G LYS* 3.1 27.2 + - + +
247G GLU* 3.0 13.2 + - - +
249G LEU* 1.3 74.0 - - - +
251G ASP* 1.3 67.5 + - - +
253G LYS* 3.3 6.9 + - + +
254G ARG* 3.0 28.3 + - - +
272H GLU* 4.5 20.9 - - + -
275H ILE* 3.4 35.9 - - + -
276H ARG* 4.0 39.9 - - + +
----------------------------------------------------------
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Residues in contact with ASP 251 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109G ASP* 3.3 18.8 - - - +
112G LYS* 3.4 36.5 + - - +
247G GLU* 3.0 17.9 + - - +
248G VAL* 3.2 9.8 - - - +
250G LEU* 1.3 77.5 - - - +
252G ILE* 1.3 63.4 + - - +
254G ARG* 3.1 31.1 + - - +
255G HIS* 3.0 28.7 + - + -
----------------------------------------------------------
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Residues in contact with ILE 252 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42G LEU* 4.5 7.6 - - + -
46G VAL* 3.8 28.3 - - + -
49G ARG* 6.5 0.2 - - + -
105G LEU* 4.2 9.4 - - + -
109G ASP* 4.0 22.2 - - + +
248G VAL* 2.8 37.5 + - + +
249G LEU* 3.1 22.2 + - + +
251G ASP* 1.3 71.6 - - - +
253G LYS* 1.3 64.6 + - - +
255G HIS* 3.0 3.3 + - - +
256G LEU* 2.8 49.9 + - + +
87H ILE* 3.9 18.6 - - + -
----------------------------------------------------------
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Residues in contact with LYS 253 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249G LEU 2.9 12.8 + - - +
250G LEU* 3.5 11.5 + - + +
252G ILE* 1.3 77.4 - - - +
254G ARG* 1.3 80.5 + - - +
256G LEU* 3.3 4.0 + - - +
257G ASN* 3.2 35.3 + - - +
260G GLU* 5.0 1.6 + - - -
87H ILE* 5.4 0.4 - - - +
268H TYR* 4.0 10.3 - - + +
269H ARG* 3.6 13.2 - - - +
271H LEU* 3.4 36.3 - - + +
272H GLU* 2.8 57.8 + - + +
275H ILE* 4.2 6.9 - - + +
----------------------------------------------------------
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Residues in contact with ARG 254 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250G LEU* 3.0 20.0 + - - +
251G ASP* 3.1 33.0 + - - +
253G LYS* 1.3 92.8 - - - +
255G HIS* 1.3 83.2 + - - +
257G ASN* 3.3 17.8 + - - +
----------------------------------------------------------
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Residues in contact with HIS 255 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101G VAL* 3.5 23.4 - - - +
104G ASN* 3.6 41.4 + - + +
105G LEU* 4.4 9.4 - - + -
108G GLU* 3.8 22.4 + - + +
109G ASP* 2.5 46.0 + - - +
251G ASP* 3.0 17.0 + - + +
252G ILE 3.0 5.1 + - - +
254G ARG* 1.3 100.5 + - - +
256G LEU* 1.3 63.4 + - - +
257G ASN 3.3 1.6 + - - -
258G LEU* 5.3 0.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 256 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49G ARG* 3.8 30.4 + - + +
53G GLU* 4.8 0.2 - - - +
101G VAL* 3.9 24.1 - - + +
105G LEU* 4.1 19.1 - - + -
252G ILE* 2.8 39.9 + - + +
253G LYS* 4.0 6.3 - - - +
254G ARG 3.3 0.2 - - - -
255G HIS* 1.3 78.6 - - - +
257G ASN* 1.3 56.3 + - - +
258G LEU* 3.1 15.6 + - - +
87H ILE* 4.0 11.4 - - + -
90H GLU* 3.5 27.6 - - + +
264H TYR* 5.3 0.2 + - - -
268H TYR* 3.3 24.4 + - + +
271H LEU* 5.1 1.6 - - + -
----------------------------------------------------------
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Residues in contact with ASN 257 (chain G).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253G LYS* 3.2 21.1 + - - +
254G ARG* 3.3 12.4 + - - +
255G HIS 3.2 4.7 - - - -
256G LEU* 1.3 73.1 - - - +
258G LEU* 1.3 61.9 + - - +
259G ALA* 2.8 36.2 - - - +
260G GLU* 2.9 44.7 - - - +
261G ASN* 3.9 13.5 + - - +
268H TYR* 3.5 24.9 - - + +
269H ARG* 4.3 2.6 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il