Contacts of the helix formed by residues 190 - 257 (chain H) in PDB entry 3Q84
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LYS 190 (chain H).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
186H GLU* 3.3 40.9 + - - +
187H GLN* 3.8 20.0 - - + +
189H LYS* 1.3 76.7 - - - +
191H LEU* 1.3 58.2 + - + +
193H ASP* 3.2 22.1 + - - +
194H LYS* 3.2 14.4 + - - +
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Residues in contact with LEU 191 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173H ARG* 3.4 15.9 - - + +
174H GLU* 3.7 27.8 - - + +
177H SER* 2.2 47.3 - - - -
187H GLN 3.3 14.6 - - - +
188H GLN* 4.4 10.8 - - + +
189H LYS 3.1 0.6 - - - -
190H LYS* 1.3 76.5 - - + +
192H GLN* 1.3 69.2 + - + +
193H ASP 3.3 4.0 - - - -
194H LYS* 3.7 22.8 - - - +
195H VAL* 2.9 31.0 + - + +
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Residues in contact with GLN 192 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174H GLU* 6.3 0.7 - - + -
188H GLN* 3.2 36.6 - - - +
189H LYS* 3.0 32.5 + - - +
191H LEU* 1.3 87.2 - - + +
193H ASP* 1.3 58.0 + - - +
194H LYS 3.6 0.4 - - - -
195H VAL* 3.6 22.4 - - + -
196H ASP* 3.3 26.8 - - - +
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Residues in contact with ASP 193 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189H LYS* 2.9 15.5 + - - +
190H LYS* 3.2 17.5 + - - +
192H GLN* 1.3 80.0 - - - +
194H LYS* 1.3 59.9 + - - +
195H VAL 3.4 0.2 - - - -
196H ASP* 4.0 12.6 - - - +
197H LYS* 3.7 19.8 + - - +
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Residues in contact with LYS 194 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169H LEU* 3.2 33.5 - - + +
170H ALA* 3.6 5.8 + - + +
173H ARG* 3.2 25.0 - - - +
190H LYS 3.2 9.5 + - - +
191H LEU* 3.7 28.9 - - - +
193H ASP* 1.3 76.4 - - - +
195H VAL* 1.3 67.5 + - + +
197H LYS* 3.5 4.0 + - - +
198H CYS* 3.1 36.5 + - - +
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Residues in contact with VAL 195 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167H GLU* 5.4 0.9 - - - +
170H ALA* 3.3 38.6 - - + +
171H MSE 4.5 14.6 - - + -
174H GLU* 5.7 1.8 - - + -
191H LEU* 2.9 27.7 + - + +
192H GLN* 3.6 20.9 - - + +
193H ASP 3.4 0.2 - - - -
194H LYS* 1.3 78.3 - - - +
196H ASP* 1.3 67.9 + - - +
198H CYS* 3.7 2.0 + - - +
199H LYS* 3.3 34.6 + - + +
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Residues in contact with ASP 196 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192H GLN* 3.3 22.5 + - - +
193H ASP* 4.2 14.4 - - - +
194H LYS 3.2 0.4 - - - -
195H VAL* 1.3 78.5 - - - +
197H LYS* 1.3 58.9 + - - +
198H CYS 3.0 4.0 - - - -
199H LYS* 2.9 24.6 + - - +
200H GLN* 3.1 23.5 + - + +
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Residues in contact with LYS 197 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193H ASP 3.7 15.6 + - - +
194H LYS* 3.5 5.7 + - - +
196H ASP* 1.3 77.9 - - - +
198H CYS* 1.3 62.4 + - - +
200H GLN* 3.7 19.8 + - - +
201H ASP* 3.3 32.5 + - - +
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Residues in contact with CYS 198 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163H ALA 4.2 4.7 - - - +
166H GLU* 4.2 24.2 - - + +
167H GLU* 4.4 18.7 - - - +
169H LEU* 6.2 1.1 - - - -
170H ALA* 5.1 3.8 - - + -
194H LYS* 3.1 28.2 + - - +
195H VAL* 4.1 4.7 - - - +
196H ASP 2.9 1.0 + - - -
197H LYS* 1.3 82.3 - - - +
199H LYS* 1.3 63.1 + - - +
201H ASP* 3.4 19.6 - - - +
202H VAL* 3.1 19.8 - - - +
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Residues in contact with LYS 199 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167H GLU* 2.9 39.1 + - + +
171H MSE 4.4 10.6 - - + +
195H VAL* 3.3 25.8 + - + +
196H ASP* 2.9 11.0 + - - +
198H CYS* 1.3 74.3 - - - +
200H GLN* 1.3 66.4 + - + +
201H ASP 3.1 1.8 - - - -
202H VAL* 3.5 6.0 + - - +
203H GLN* 3.2 32.1 + - + +
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Residues in contact with GLN 200 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196H ASP* 3.1 20.0 + - + +
197H LYS* 3.9 22.6 - - - +
198H CYS 3.4 0.2 - - - -
199H LYS* 1.3 77.5 - - + +
201H ASP* 1.3 57.0 + - - +
203H GLN* 3.3 9.6 + - - +
204H LYS* 3.0 30.3 + - - +
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Residues in contact with ASP 201 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163H ALA* 4.1 14.2 - - + +
166H GLU* 5.7 4.1 - - + +
197H LYS* 3.3 21.7 + - - +
198H CYS* 3.4 20.5 - - - +
200H GLN* 1.3 74.4 - - - +
202H VAL* 1.3 58.4 + - - +
203H GLN 3.1 1.5 + - - -
204H LYS* 3.2 17.9 + - - +
205H THR* 2.7 39.4 + - - -
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Residues in contact with VAL 202 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160H TYR* 4.4 7.2 - - + +
163H ALA* 3.9 19.4 - - + +
164H CYS* 4.5 11.2 - - - +
167H GLU* 3.5 31.2 - - + +
198H CYS 3.1 17.9 - - - +
199H LYS 3.7 7.0 - - - +
201H ASP* 1.3 74.8 - - - +
203H GLN* 1.3 69.4 + - - +
205H THR* 3.7 9.3 - - + +
206H GLN* 2.8 44.1 + - - +
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Residues in contact with GLN 203 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167H GLU* 5.9 0.6 + - - -
199H LYS* 3.2 20.8 + - - +
200H GLN* 3.5 9.6 - - - +
201H ASP 3.1 1.4 - - - -
202H VAL* 1.3 86.3 - - - +
204H LYS* 1.3 60.2 + - - +
206H GLN* 2.9 15.5 + - - +
207H GLU* 2.8 28.8 + - - +
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Residues in contact with LYS 204 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200H GLN* 3.0 16.7 + - - +
201H ASP* 4.0 18.1 + - - +
203H GLN* 1.3 73.8 - - - +
205H THR* 1.3 60.4 + - - +
207H GLU* 3.1 12.6 + - + +
208H LYS* 3.0 31.4 + - + +
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Residues in contact with THR 205 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156H ALA 4.3 1.9 - - - +
159H ALA* 3.2 22.3 + - - +
160H TYR* 3.0 45.4 - - + +
163H ALA* 3.6 11.5 - - + +
201H ASP* 2.7 23.3 + - - +
202H VAL* 3.7 2.7 - - - +
204H LYS* 1.3 75.7 - - - +
206H GLN* 1.3 60.7 + - - +
208H LYS* 4.3 4.7 - - - +
209H TYR* 3.4 22.5 + - - +
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Residues in contact with GLN 206 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302G PHE* 4.7 8.5 - - + -
160H TYR* 3.6 36.5 + - + -
202H VAL* 2.8 35.3 + - - +
203H GLN* 2.9 14.7 + - - +
205H THR* 1.3 71.8 - - - +
207H GLU* 1.3 67.1 + - - +
209H TYR* 3.4 2.3 + - - +
210H GLU* 2.8 55.5 + - + +
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Residues in contact with GLU 207 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203H GLN 2.8 16.2 + - - +
204H LYS* 3.1 13.8 + - + +
206H GLN* 1.3 72.6 - - - +
208H LYS* 1.3 56.4 + - - +
210H GLU* 3.2 10.4 + - + +
211H LYS* 2.8 34.3 + - + +
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Residues in contact with LYS 208 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152H GLU* 5.3 4.0 + - - -
156H ALA* 4.5 12.3 - - + -
204H LYS* 3.0 18.6 + - + +
205H THR* 4.3 5.2 - - - +
207H GLU* 1.3 74.2 - - - +
209H TYR* 1.3 66.9 + - - +
211H LYS* 3.1 18.4 + - + +
212H VAL* 3.0 44.1 + - - +
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Residues in contact with TYR 209 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
301G GLN 3.8 7.3 + - - -
302G PHE* 3.4 34.5 - + - -
303G GLU* 3.3 32.9 + - - +
153H LEU* 3.6 27.9 - - + +
156H ALA* 3.8 19.4 - - + +
157H LYS* 3.7 37.7 - - + +
160H TYR* 3.7 26.2 - + + -
161H HIS* 5.5 0.2 - - - -
205H THR 3.4 17.9 + - - +
206H GLN* 3.6 3.4 - - - +
207H GLU 3.3 0.4 - - - -
208H LYS* 1.3 77.9 - - - +
210H GLU* 1.3 55.6 + - - +
212H VAL* 3.1 3.3 + - - +
213H LEU* 2.9 37.1 + - + +
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Residues in contact with GLU 210 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
302G PHE* 4.1 22.7 - - + -
206H GLN* 2.8 55.0 + - - +
207H GLU* 3.6 7.0 - - - +
209H TYR* 1.3 73.4 - - - +
211H LYS* 1.3 56.3 + - - +
213H LEU* 3.5 9.0 + - - +
214H GLU* 2.9 42.0 + - - +
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Residues in contact with LYS 211 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207H GLU* 2.8 22.2 + - + +
208H LYS* 3.3 23.3 - - + +
210H GLU* 1.3 69.8 - - - +
212H VAL* 1.3 65.8 + - - +
214H GLU* 2.9 39.3 + - - +
215H ASP* 3.1 36.6 + - - +
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Residues in contact with VAL 212 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149H LYS* 4.3 10.3 - - + +
152H GLU* 4.0 16.8 - - + +
153H LEU* 3.6 38.6 - - + +
156H ALA* 4.3 12.8 - - + -
208H LYS* 3.0 43.9 + - - +
209H TYR 3.7 6.1 - - - +
211H LYS* 1.3 75.0 - - - +
213H LEU* 1.3 64.9 + - - +
215H ASP* 3.0 9.4 + - + +
216H VAL* 2.9 26.2 + - + +
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Residues in contact with LEU 213 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300G PRO* 4.0 32.8 - - + +
301G GLN* 3.9 11.9 - - - +
302G PHE* 3.7 44.9 - - + +
153H LEU* 4.4 12.2 - - + +
209H TYR* 2.9 30.5 + - + +
210H GLU* 3.7 7.0 - - - +
212H VAL* 1.3 77.2 - - - +
214H GLU* 1.3 60.1 + - + +
216H VAL* 3.6 7.5 + - + +
217H GLY* 3.2 18.2 + - - -
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Residues in contact with GLU 214 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
210H GLU* 2.9 28.9 + - - +
211H LYS* 2.9 40.6 + - - +
212H VAL 3.1 0.4 - - - -
213H LEU* 1.3 74.1 - - + +
215H ASP* 1.3 61.5 + - - +
217H GLY* 3.4 2.4 + - - -
218H LYS* 2.8 29.7 + - - +
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Residues in contact with ASP 215 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149H LYS* 3.0 31.2 + - + +
211H LYS* 3.1 34.0 + - - +
212H VAL* 3.0 11.3 + - + +
214H GLU* 1.3 74.8 - - - +
216H VAL* 1.3 59.9 + - - +
218H LYS* 3.1 11.1 + - - +
219H THR* 2.8 37.6 + - - +
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Residues in contact with VAL 216 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
300G PRO* 4.0 20.2 - - + -
146H TRP* 3.7 25.5 - - + -
149H LYS* 4.8 10.4 - - + +
150H MSE 4.3 15.5 - - + -
153H LEU* 4.0 20.0 - - + -
212H VAL* 2.9 21.8 + - + +
213H LEU* 3.7 15.9 - - + +
214H GLU 3.4 0.2 - - - -
215H ASP* 1.3 73.1 - - - +
217H GLY* 1.3 53.0 + - - +
219H THR* 2.7 21.9 + - - -
220H THR* 2.6 29.3 + - + +
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Residues in contact with GLY 217 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213H LEU 3.2 12.1 + - - -
214H GLU* 3.7 3.4 - - - -
216H VAL* 1.3 79.3 - - - +
218H LYS* 1.3 61.5 + - - +
220H THR* 3.2 20.1 - - - +
221H PRO* 3.3 10.2 - - - +
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Residues in contact with LYS 218 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214H GLU 2.8 17.9 + - - +
215H ASP* 3.1 17.2 + - - +
217H GLY* 1.3 75.5 - - - +
219H THR* 1.3 67.2 + - + +
221H PRO* 3.5 9.0 - - - +
222H GLN* 5.2 1.7 + - - +
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Residues in contact with THR 219 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145H PRO* 6.4 2.5 - - - -
146H TRP* 4.6 10.4 - - - +
149H LYS* 3.9 29.1 - - - +
215H ASP* 2.8 24.4 + - - +
216H VAL* 2.7 15.6 + - - -
218H LYS* 1.3 82.2 - - + +
220H THR* 1.3 66.1 + - - +
221H PRO* 3.4 0.7 - - - -
222H GLN* 3.1 11.7 + - - +
223H TYR* 3.1 21.6 + - - +
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Residues in contact with THR 220 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299G TRP* 4.5 10.8 - - + -
146H TRP* 3.6 25.6 - - + -
216H VAL* 2.6 23.5 + - + +
217H GLY* 3.2 24.5 - - - +
219H THR* 1.3 74.1 - - - +
221H PRO* 1.3 66.1 - - + +
223H TYR* 3.3 3.8 + - - +
224H MSE 3.0 37.8 + - - +
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Residues in contact with PRO 221 (chain H).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217H GLY 3.3 17.0 - - - +
218H LYS 3.5 10.5 - - - +
219H THR 3.6 0.4 - - - -
220H THR* 1.3 95.0 - - + +
222H GLN* 1.3 54.3 + - - +
224H MSE 3.6 8.5 + - + +
225H GLU* 3.2 25.6 + - - +
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Residues in contact with GLN 222 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
218H LYS 5.2 1.3 + - - +
219H THR* 3.1 13.3 + - - +
221H PRO* 1.3 76.2 - - - +
223H TYR* 1.3 67.1 + - - +
224H MSE 3.2 0.2 - - - -
225H GLU* 3.4 23.8 + - - +
226H ASN* 3.0 49.0 + - - +
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Residues in contact with TYR 223 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
299G TRP* 4.2 10.5 - + - -
20H TRP* 3.0 44.5 + + - -
142H ALA 3.8 16.1 - - - +
143H GLN* 3.1 27.1 + - + -
146H TRP* 3.3 69.3 - + + -
219H THR 3.1 12.8 + - - +
220H THR 3.5 6.5 - - - +
222H GLN* 1.3 76.4 - - - +
224H MSE 1.3 66.6 + - + +
226H ASN* 3.9 2.7 - - - +
227H MSE 3.0 47.8 + - + +
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Residues in contact with MSE 224 (chain H).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
293G PRO 5.6 0.7 - - - +
299G TRP* 3.7 33.9 - - + +
20H TRP* 3.6 44.8 - - + +
220H THR* 3.0 25.6 + - - +
221H PRO* 3.9 7.4 - - + +
223H TYR* 1.3 78.1 - - + +
225H GLU* 1.3 57.9 + - - +
227H MSE 3.7 0.9 - - - +
228H GLU* 2.9 32.6 + - - +
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Residues in contact with GLU 225 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221H PRO 3.2 16.1 + - - +
222H GLN* 3.5 21.5 + - - +
223H TYR 3.3 0.2 - - - -
224H MSE 1.3 79.6 - - - +
226H ASN* 1.3 69.1 + - - +
228H GLU* 3.4 6.9 + - + +
229H GLN* 3.0 26.2 + - + +
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Residues in contact with ASN 226 (chain H).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142H ALA* 3.7 26.9 - - + +
222H GLN* 3.0 45.5 + - - +
223H TYR* 4.0 2.3 - - - +
225H GLU* 1.3 82.1 + - - +
227H MSE 1.3 66.0 + - - +
229H GLN* 3.3 21.4 + - - +
230H VAL* 3.3 15.2 + - - +
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Residues in contact with MSE 227 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19H PHE* 3.7 33.2 - - + +
20H TRP* 3.8 14.4 - - + -
25H TYR* 3.7 28.0 - - + -
139H PHE* 3.8 19.2 - - + +
142H ALA* 4.0 10.0 - - - +
143H GLN* 3.2 36.8 - - - +
223H TYR* 3.0 37.7 + - + +
224H MSE 3.7 3.1 - - - +
226H ASN* 1.3 76.8 - - - +
228H GLU* 1.3 58.0 + - - +
230H VAL* 2.9 24.7 - - - +
231H PHE* 2.9 14.1 + - - +
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Residues in contact with GLU 228 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288G ARG* 3.6 28.9 + - - -
293G PRO* 3.7 19.8 - - - +
20H TRP* 5.0 4.6 - - + -
224H MSE 2.9 21.3 + - - +
225H GLU* 3.6 7.9 - - + +
227H MSE 1.3 79.4 - - - +
229H GLN* 1.3 55.2 + - - +
231H PHE* 3.3 9.5 + - - +
232H GLU* 3.0 38.7 + - + +
----------------------------------------------------------
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Residues in contact with GLN 229 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225H GLU* 3.0 20.8 + - + +
226H ASN* 3.4 15.6 + - - +
228H GLU* 1.3 75.3 - - - +
230H VAL* 1.3 69.4 + - + +
232H GLU* 3.3 6.9 + - - +
233H GLN* 3.1 43.8 + - - +
----------------------------------------------------------
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Residues in contact with VAL 230 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135H ALA* 4.9 5.6 - - - +
138H GLY* 3.8 30.5 - - - +
139H PHE* 3.2 36.8 - - + +
142H ALA* 4.8 0.9 - - + -
226H ASN 3.4 11.4 - - - +
227H MSE 2.9 21.5 - - - +
229H GLN* 1.3 79.8 - - + +
231H PHE* 1.3 67.3 + - - +
233H GLN* 3.1 26.2 + - - +
234H CYS* 3.1 17.2 + - - -
----------------------------------------------------------
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Residues in contact with PHE 231 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
287G PHE* 4.0 10.3 - + - -
288G ARG* 3.9 25.1 - - + -
292G GLY* 3.8 8.3 - - - -
293G PRO* 3.6 40.2 - - + -
19H PHE* 4.0 10.3 - + + -
28H THR* 3.5 30.3 - - + -
139H PHE* 3.9 9.4 - + + -
227H MSE 2.9 15.1 + - - +
228H GLU* 3.5 17.5 - - - +
229H GLN 3.2 0.2 - - - -
230H VAL* 1.3 80.0 - - - +
232H GLU* 1.3 61.6 + - - +
234H CYS* 3.2 5.4 + - - +
235H GLN* 2.9 63.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU 232 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
288G ARG* 5.9 2.3 - - - -
228H GLU* 3.0 27.6 + - + +
229H GLN* 3.8 5.6 - - - +
230H VAL 3.2 0.2 - - - -
231H PHE* 1.3 79.0 - - - +
233H GLN* 1.3 63.3 + - - +
235H GLN* 3.3 20.6 + - - +
236H GLN* 2.9 42.3 + - - +
----------------------------------------------------------
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Residues in contact with GLN 233 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134H GLU* 4.9 8.1 - - - +
229H GLN* 3.1 42.9 + - - +
230H VAL* 3.1 20.9 + - - +
232H GLU* 1.3 76.8 - - - +
234H CYS* 1.3 58.3 + - - +
236H GLN* 3.3 17.0 + - - +
237H PHE* 3.0 25.9 + - - +
----------------------------------------------------------
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Residues in contact with CYS 234 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28H THR* 3.6 31.2 - - + +
31H ARG* 4.3 7.6 - - - +
32H ILE* 4.2 14.6 - - + -
135H ALA* 3.9 26.9 - - - -
139H PHE* 4.3 6.5 - - - -
230H VAL* 3.1 14.2 + - - -
231H PHE 3.4 7.0 - - - +
233H GLN* 1.3 73.7 - - - +
235H GLN* 1.3 68.1 + - - +
237H PHE* 2.7 10.0 + - - +
238H GLU* 2.7 23.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 235 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
284G LEU* 3.3 42.1 - - + +
287G PHE* 4.0 2.4 - - - +
288G ARG* 4.1 4.2 - - - +
31H ARG* 2.9 44.3 - - - +
231H PHE* 2.9 52.6 + - + +
232H GLU* 3.3 25.7 + - - +
234H CYS* 1.3 73.2 - - - +
236H GLN* 1.3 57.2 + - - +
238H GLU* 3.1 2.6 + - - +
239H GLU* 2.8 29.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 236 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232H GLU* 2.9 31.4 + - - +
233H GLN* 3.4 19.1 + - - +
235H GLN* 1.3 75.4 - - - +
237H PHE* 1.3 62.1 + - - +
239H GLU* 3.3 20.4 + - - +
240H LYS* 3.4 31.0 + - - +
----------------------------------------------------------
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Residues in contact with PHE 237 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32H ILE* 4.1 26.9 - - + -
116H TRP* 5.4 6.4 - + - -
120H ALA* 3.6 33.7 - - + -
121H TYR* 3.4 36.6 - + - -
131H GLU* 4.0 15.0 - - + -
233H GLN 3.0 12.5 + - - +
234H CYS* 2.7 12.8 + - - +
236H GLN* 1.3 75.9 - - - +
238H GLU* 1.3 65.9 + - + +
239H GLU 3.2 1.0 + - - -
240H LYS* 3.3 24.1 + - + +
241H ARG* 3.5 12.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 238 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76G GLN* 5.2 1.2 + - - -
284G LEU* 4.1 7.2 - - + -
31H ARG* 3.9 53.4 + - - +
32H ILE* 5.9 0.2 - - - -
35H GLY* 5.0 0.9 - - - -
121H TYR* 5.6 0.5 + - - -
234H CYS 2.7 13.8 + - - +
235H GLN 3.5 3.8 - - - +
237H PHE* 1.3 82.3 - - + +
239H GLU* 1.3 59.2 + - - +
241H ARG* 2.7 42.9 + - - +
242H LEU* 3.2 39.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU 239 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280G ALA* 4.6 6.1 - - + -
281G GLN* 3.1 27.9 - - - +
284G LEU* 3.6 23.7 - - + +
235H GLN 2.8 16.1 + - - +
236H GLN* 3.7 16.2 - - - +
237H PHE 3.1 0.4 - - - -
238H GLU* 1.3 77.1 - - - +
240H LYS* 1.3 67.0 + - + +
242H LEU* 3.3 2.2 + - - +
243H VAL* 2.9 41.2 + - + +
----------------------------------------------------------
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Residues in contact with LYS 240 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116H TRP* 4.1 13.2 + - + +
236H GLN* 3.4 21.9 + - - +
237H PHE* 3.3 20.5 + - + +
239H GLU* 1.3 78.2 - - + +
241H ARG* 1.3 62.3 + - - +
243H VAL* 4.1 3.7 - - - +
244H PHE* 3.1 26.5 + - - +
----------------------------------------------------------
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Residues in contact with ARG 241 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76G GLN* 2.6 36.2 + - - +
31H ARG* 5.5 0.8 + - - +
35H GLY* 3.8 27.1 + - - +
38H LEU* 3.3 27.0 - - - +
39H CYS* 5.1 5.7 - - - -
116H TRP* 3.8 32.2 - - + -
121H TYR* 4.8 4.7 - - - +
237H PHE* 3.5 10.7 + - + +
238H GLU* 2.7 46.9 + - - +
240H LYS* 1.3 80.2 - - - +
242H LEU* 1.3 65.4 + - - +
244H PHE* 3.3 4.9 + - + +
245H LEU* 2.9 44.7 + - + +
----------------------------------------------------------
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Residues in contact with LEU 242 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76G GLN* 4.2 14.8 - - - +
77G TYR 6.0 0.2 - - - +
80G LEU* 3.8 29.3 - - + +
280G ALA* 4.1 29.2 - - + +
283G ASP* 4.5 10.5 - - + +
284G LEU* 4.3 10.8 - - + -
238H GLU* 3.2 45.4 + - + +
239H GLU* 4.0 2.0 - - - +
241H ARG* 1.3 92.0 - - - +
243H VAL* 1.3 63.5 + - - +
245H LEU* 3.3 6.3 + - + +
246H LYS* 2.9 24.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 243 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
280G ALA* 4.3 17.9 - - + -
281G GLN* 4.4 4.3 - - - +
239H GLU* 2.9 33.9 + - + +
240H LYS* 4.1 4.0 - - - +
242H LEU* 1.3 74.1 - - - +
244H PHE* 1.3 65.1 + - - +
246H LYS* 3.2 16.2 + - - +
247H GLU* 3.3 14.4 + - + +
----------------------------------------------------------
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Residues in contact with PHE 244 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39H CYS* 5.5 2.7 - - - -
42H LEU* 6.0 1.1 - - + -
112H LYS* 3.4 39.3 - - + -
113H VAL* 3.9 13.7 - - + -
116H TRP* 3.3 63.3 - + + +
240H LYS 3.1 21.6 + - - +
241H ARG* 3.6 6.1 - - + +
243H VAL* 1.3 76.4 - - - +
245H LEU* 1.3 68.5 + - + +
247H GLU* 2.9 9.9 + - - +
248H VAL* 2.9 48.1 + - + +
----------------------------------------------------------
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Residues in contact with LEU 245 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76G GLN* 3.9 22.0 - - - +
80G LEU* 3.6 28.7 - - + +
84G TRP* 5.7 7.4 - - + -
42H LEU* 4.3 21.5 - - + -
241H ARG* 2.9 30.2 + - + +
242H LEU* 3.4 8.5 - - + +
244H PHE* 1.3 81.7 - - + +
246H LYS* 1.3 59.2 + - - +
248H VAL* 2.9 5.4 + - + +
249H LEU* 2.8 52.3 + - + +
----------------------------------------------------------
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Residues in contact with LYS 246 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80G LEU* 3.9 18.1 - - + +
275G ILE* 3.4 25.5 - - + +
276G ARG* 3.0 23.1 + - - +
278G ALA* 2.8 31.9 + - + +
280G ALA* 5.9 2.5 - - + +
242H LEU 2.9 16.5 + - - +
243H VAL* 3.2 8.5 + - - +
245H LEU* 1.3 76.0 - - - +
247H GLU* 1.3 57.5 + - - +
249H LEU* 3.8 7.5 + - + +
250H LEU* 3.4 30.7 + - + +
----------------------------------------------------------
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Residues in contact with GLU 247 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112H LYS* 2.8 28.6 + - - -
243H VAL* 3.3 11.7 + - + +
244H PHE* 2.9 12.3 + - - +
245H LEU 2.9 1.2 - - - -
246H LYS* 1.3 79.3 - - - +
248H VAL* 1.3 63.2 + - - +
249H LEU 3.2 0.2 - - - -
250H LEU* 3.6 9.5 + - + +
251H ASP* 3.0 30.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 248 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42H LEU* 4.0 11.0 - - + -
109H ASP* 4.5 10.3 - - + +
112H LYS* 4.3 12.6 - - + +
113H VAL* 4.0 20.0 - - + -
244H PHE* 2.9 53.5 + - + +
245H LEU* 2.9 9.3 + - - +
247H GLU* 1.3 76.5 - - - +
249H LEU* 1.3 58.9 + - - +
251H ASP* 3.0 10.4 + - + +
252H ILE* 2.9 46.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 249 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
80G LEU* 4.3 12.3 - - + +
83G ALA* 3.8 18.4 - - + +
84G TRP* 3.7 42.4 - - + +
87G ILE* 4.0 21.1 - - + +
275G ILE* 3.6 23.6 - - + +
42H LEU* 4.5 7.2 - - + -
245H LEU* 2.8 38.7 + - + +
246H LYS* 3.9 6.3 - - - +
247H GLU 3.2 0.2 - - - -
248H VAL* 1.3 76.6 - - - +
250H LEU* 1.3 56.0 + - - +
252H ILE* 3.5 15.9 + - + +
253H LYS* 3.2 19.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 250 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272G GLU* 4.4 23.1 - - + -
275G ILE* 3.3 33.7 - - + -
276G ARG* 4.3 30.5 - - + +
246H LYS* 3.4 30.1 + - + +
247H GLU* 3.8 11.4 - - + +
248H VAL 3.3 0.6 - - - -
249H LEU* 1.3 75.4 - - - +
251H ASP* 1.3 59.9 + - - +
253H LYS* 3.2 7.2 + - + +
254H ARG* 2.9 53.0 + - - +
----------------------------------------------------------
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Residues in contact with ASP 251 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109H ASP* 3.9 16.1 - - - +
112H LYS* 3.3 34.4 - - - +
247H GLU* 3.0 28.7 + - - +
248H VAL* 3.0 12.0 + - + +
250H LEU* 1.3 76.8 - - - +
252H ILE* 1.3 57.3 + - - +
254H ARG* 3.2 20.4 + - - +
255H HIS* 2.9 38.8 + - + -
----------------------------------------------------------
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Residues in contact with ILE 252 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87G ILE* 4.1 15.9 - - + -
42H LEU* 4.2 11.0 - - + -
46H VAL* 3.6 28.9 - - + -
105H LEU* 4.3 9.2 - - + -
109H ASP* 3.5 25.6 - - + +
248H VAL* 2.9 32.7 + - + +
249H LEU* 3.6 15.3 - - + +
251H ASP* 1.3 76.0 - - - +
253H LYS* 1.3 58.3 + - - +
255H HIS* 2.9 5.2 + - - +
256H LEU* 2.8 49.7 + - + +
----------------------------------------------------------
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Residues in contact with LYS 253 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87G ILE* 5.9 0.7 - - + -
268G TYR* 3.6 22.7 + - + +
269G ARG* 5.9 0.2 - - - +
271G LEU* 3.8 30.5 - - + -
272G GLU* 2.8 40.9 + - + +
275G ILE* 4.0 12.6 - - + -
249H LEU 3.2 14.1 + - - +
250H LEU* 3.2 11.2 + - + +
252H ILE* 1.3 77.1 - - - +
254H ARG* 1.3 67.7 + - + +
256H LEU* 3.4 5.8 + - - +
257H ASN* 3.1 40.9 + - - +
260H GLU* 2.8 31.4 + - - -
----------------------------------------------------------
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Residues in contact with ARG 254 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
272G GLU* 4.9 8.9 + - - -
276G ARG* 4.8 10.9 - - - +
250H LEU* 2.9 43.7 + - - +
251H ASP* 3.2 22.3 + - - +
253H LYS* 1.3 82.7 - - - +
255H HIS* 1.3 67.3 + - + +
257H ASN* 3.6 13.3 + - - +
260H GLU* 3.7 38.5 + - + +
----------------------------------------------------------
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Residues in contact with HIS 255 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101H VAL* 3.2 25.6 - - - +
104H ASN* 3.6 36.6 - - + +
105H LEU* 4.4 10.1 - - + -
108H GLU* 3.7 20.6 - - + +
109H ASP* 2.7 42.5 + - - +
251H ASP* 2.9 18.8 + - + -
252H ILE 2.9 11.1 + - - +
254H ARG* 1.3 80.2 - - + +
256H LEU* 1.3 64.4 + - - +
257H ASN 3.5 1.4 + - - -
258H LEU* 5.1 1.0 - - - +
----------------------------------------------------------
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Residues in contact with LEU 256 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
63G TRP* 5.8 0.4 - - + -
87G ILE* 3.9 11.4 - - + -
90G GLU* 3.8 24.5 - - + +
264G TYR* 4.0 2.4 + - - -
268G TYR* 3.8 25.5 + - + +
271G LEU* 5.3 1.1 - - + -
49H ARG* 3.8 31.2 - - + +
53H GLU* 4.8 1.1 - - - +
101H VAL* 3.9 23.8 - - + +
105H LEU* 4.0 18.2 - - + -
252H ILE* 2.8 39.6 + - + +
253H LYS* 3.4 5.8 + - - +
255H HIS* 1.3 73.1 - - - +
257H ASN* 1.3 58.5 + - - +
258H LEU* 3.2 14.1 + - - +
----------------------------------------------------------
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Residues in contact with ASN 257 (chain H).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
265G ILE* 6.2 1.2 - - - +
268G TYR* 3.1 43.3 - - + +
253H LYS* 3.1 25.1 + - - +
254H ARG 3.6 3.9 + - - +
255H HIS 3.3 3.6 - - - -
256H LEU* 1.3 72.6 - - - +
258H LEU* 1.3 65.2 + - - +
259H ALA* 3.1 24.2 + - - +
260H GLU* 2.9 48.3 + - + +
261H ASN* 3.9 2.8 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il