Contacts of the helix formed by residues 191 - 257 (chain M) in PDB entry 3Q84
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with LEU 191 (chain M).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170M ALA* 5.6 11.0 - - + +
188M GLN* 2.8 41.9 + - + -
192M GLN* 1.3 66.7 + - - +
193M ASP* 3.6 6.6 + - - -
194M LYS* 3.4 24.5 + - + +
195M VAL* 3.1 39.4 + - + +
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Residues in contact with GLN 192 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188M GLN* 3.4 20.4 - - + +
191M LEU* 1.3 75.9 - - - +
193M ASP* 1.3 61.8 + - - +
194M LYS 2.8 10.4 + - - -
195M VAL* 3.6 8.8 + - - +
196M ASP* 3.7 14.4 + - - +
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Residues in contact with ASP 193 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188M GLN 4.5 6.9 + - - +
191M LEU 4.4 7.2 + - - -
192M GLN* 1.3 76.8 + - - +
194M LYS* 1.3 81.3 + - + +
196M ASP* 3.5 14.7 - - - +
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Residues in contact with LYS 194 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
191M LEU* 3.7 29.4 - - + +
192M GLN 2.8 3.2 + - - -
193M ASP* 1.3 102.2 + - - +
195M VAL* 1.3 64.1 + - + +
196M ASP* 3.1 8.3 + - - +
197M LYS* 3.4 13.2 + - - +
198M CYS* 4.4 1.0 + - - +
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Residues in contact with VAL 195 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167M GLU* 4.9 4.0 - - + +
170M ALA* 3.2 40.8 - - + -
191M LEU* 3.1 29.4 + - + +
192M GLN* 3.6 4.4 + - - +
194M LYS* 1.3 74.6 - - + +
196M ASP* 1.3 59.6 + - - +
198M CYS* 2.5 53.3 + - - -
199M LYS* 4.8 5.2 - - + -
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Residues in contact with ASP 196 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192M GLN 3.7 14.3 + - - +
193M ASP* 3.5 11.5 - - - +
194M LYS 3.2 12.6 - - - +
195M VAL* 1.3 75.4 - - - +
197M LYS* 1.3 72.4 + - - +
199M LYS* 3.6 8.7 - - + +
200M GLN* 2.8 26.3 + - + +
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Residues in contact with LYS 197 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
194M LYS 3.4 8.0 + - - +
195M VAL 3.2 1.2 - - - -
196M ASP* 1.3 84.0 + - - +
198M CYS* 1.3 57.1 + - - +
200M GLN* 2.9 26.3 - - + +
201M ASP* 2.9 26.9 + - - +
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Residues in contact with CYS 198 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163M ALA* 5.3 0.5 - - - +
166M GLU* 4.3 20.9 - - + +
167M GLU* 3.0 41.3 - - - +
170M ALA* 4.9 4.5 - - + -
194M LYS 4.4 1.4 + - - +
195M VAL* 2.5 27.7 + - - +
197M LYS* 1.3 75.8 - - - +
199M LYS* 1.3 89.5 + - - +
201M ASP* 3.1 9.5 + - - +
202M VAL* 3.0 24.9 + - - +
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Residues in contact with LYS 199 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167M GLU* 3.0 27.8 - - + +
195M VAL* 3.0 7.1 + - + +
196M ASP* 3.2 12.1 + - + +
198M CYS* 1.3 93.7 - - - +
200M GLN* 1.3 61.7 + - - +
202M VAL* 3.2 12.7 + - - +
203M GLN* 3.2 19.8 + - - +
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Residues in contact with GLN 200 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196M ASP 2.8 14.8 + - - +
197M LYS* 2.9 38.2 - - + +
199M LYS* 1.3 77.3 - - - +
201M ASP* 1.3 53.9 + - - -
203M GLN* 3.6 20.4 + - - +
204M LYS* 3.2 28.4 + - - +
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Residues in contact with ASP 201 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163M ALA* 4.8 6.1 - - + -
166M GLU* 5.3 5.4 - - - +
197M LYS 2.9 13.2 + - - +
198M CYS* 3.3 14.4 - - - +
200M GLN* 1.3 74.7 - - - +
202M VAL* 1.3 66.1 + - - +
204M LYS* 3.1 5.6 + - - +
205M THR* 2.9 32.0 + - + +
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Residues in contact with VAL 202 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160M TYR* 4.8 4.5 - - + -
163M ALA* 3.3 39.3 - - + +
164M CYS* 4.3 4.5 - - - +
167M GLU* 4.1 17.9 - - + +
198M CYS 3.0 14.5 + - - +
199M LYS* 3.2 7.6 + - - +
201M ASP* 1.3 75.0 - - - +
203M GLN* 1.3 66.0 + - - +
205M THR* 2.7 21.4 + - - +
206M GLN* 2.9 28.1 + - - +
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Residues in contact with GLN 203 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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199M LYS* 3.4 16.3 + - - +
200M GLN* 3.8 21.8 + - - +
201M ASP 3.2 0.2 - - - -
202M VAL* 1.3 81.6 - - + +
204M LYS* 1.3 63.6 + - - +
206M GLN* 3.2 7.5 + - + +
207M GLU* 2.9 22.9 + - - +
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Residues in contact with LYS 204 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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200M GLN* 3.2 22.0 + - - +
201M ASP* 3.1 8.5 + - - +
203M GLN* 1.3 79.3 + - - +
205M THR* 1.3 63.7 + - + +
207M GLU* 3.2 15.1 + - - +
208M LYS* 3.2 19.1 + - - +
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Residues in contact with THR 205 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156M ALA* 5.1 0.9 - - - +
159M ALA* 4.4 21.5 - - + +
160M TYR* 3.9 25.1 - - - +
163M ALA* 4.0 4.3 - - + +
201M ASP* 2.9 19.2 + - + +
202M VAL* 2.7 25.3 + - - -
204M LYS* 1.3 74.4 - - + +
206M GLN* 1.3 59.1 + - - -
207M GLU 3.0 1.8 - - - -
208M LYS* 2.9 8.6 + - + +
209M TYR* 2.7 29.9 + - - +
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Residues in contact with GLN 206 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160M TYR* 2.2 53.9 + - + -
202M VAL* 2.9 26.2 + - - +
203M GLN* 3.7 7.2 - - + +
205M THR* 1.3 76.8 + - - +
207M GLU* 1.3 62.5 + - - +
209M TYR* 4.2 2.9 - - + -
210M GLU* 2.9 53.1 + - + +
302N PHE* 4.9 10.8 - - + -
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Residues in contact with GLU 207 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203M GLN 2.9 12.0 + - - +
204M LYS* 3.2 18.0 - - - +
206M GLN* 1.3 80.5 - - - +
208M LYS* 1.3 61.1 + - - +
210M GLU* 4.3 6.7 - - - +
211M LYS* 3.2 40.5 + - + +
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Residues in contact with LYS 208 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152M GLU* 5.9 2.2 - - - -
156M ALA* 4.6 13.0 - - + -
204M LYS 3.2 8.4 + - - +
205M THR* 2.9 12.9 + - + +
207M GLU* 1.3 81.9 + - - +
209M TYR* 1.3 67.1 + - - +
211M LYS* 3.3 13.4 + - + +
212M VAL* 3.2 37.6 + - - +
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Residues in contact with TYR 209 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153M LEU* 4.3 16.9 - - + +
156M ALA* 3.9 24.2 - - + +
157M LYS* 3.8 47.6 + - + +
160M TYR* 4.1 24.0 - + + -
205M THR 2.7 18.8 + - - +
206M GLN* 3.7 6.5 - - - +
208M LYS* 1.3 70.1 - - - +
210M GLU* 1.3 56.6 + - + +
212M VAL* 2.8 23.5 + - + +
213M LEU* 3.0 30.2 + - + -
301N GLN 4.0 5.0 + - - -
302N PHE* 3.6 35.8 - + - -
303N GLU 3.4 24.4 + - - -
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Residues in contact with GLU 210 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
206M GLN* 2.9 46.1 + - + +
207M GLU* 4.3 5.7 - - - +
209M TYR* 1.3 72.7 - - + +
211M LYS* 1.3 58.0 + - + +
213M LEU* 3.2 17.3 + - + +
214M GLU* 2.8 32.0 + - - +
302N PHE* 4.5 16.8 - - + -
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Residues in contact with LYS 211 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
207M GLU* 3.2 39.9 + - + +
208M LYS* 3.6 14.8 - - + +
209M TYR 3.2 1.0 - - - -
210M GLU* 1.3 78.7 - - + +
212M VAL* 1.3 60.5 + - - +
214M GLU* 3.6 13.1 - - - +
215M ASP* 3.4 21.1 + - - +
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Residues in contact with VAL 212 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149M LYS* 4.6 2.7 - - + +
152M GLU* 3.9 26.7 - - + +
153M LEU* 3.9 34.1 - - + +
156M ALA* 5.0 2.2 - - + -
208M LYS* 3.2 35.1 + - - +
209M TYR* 2.8 11.7 + - + +
211M LYS* 1.3 77.1 - - - +
213M LEU* 1.3 55.8 + - - +
214M GLU 3.2 0.2 - - - -
215M ASP* 3.2 12.1 - - - +
216M VAL* 2.8 47.8 + - + +
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Residues in contact with LEU 213 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153M LEU* 4.5 12.3 - - + -
209M TYR* 3.0 49.5 + - + +
210M GLU* 3.5 16.2 - - + +
212M VAL* 1.3 74.4 - - - +
214M GLU* 1.3 55.4 + - - +
216M VAL* 3.0 9.9 + - + +
217M GLY* 2.8 32.7 + - - -
300N PRO* 4.4 7.6 - - + +
301N GLN* 3.6 37.5 - - - +
302N PHE* 3.7 19.1 - - + +
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Residues in contact with GLU 214 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
210M GLU 2.8 20.9 + - - +
211M LYS* 3.6 14.0 - - - +
213M LEU* 1.3 73.7 - - - +
215M ASP* 1.3 59.4 + - - +
217M GLY* 3.4 2.8 + - - -
218M LYS* 3.0 54.2 + - - +
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Residues in contact with ASP 215 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149M LYS* 3.0 36.0 + - - +
152M GLU* 5.7 0.5 - - - +
211M LYS 3.4 9.6 + - - +
212M VAL* 3.2 19.9 + - - +
213M LEU 3.2 0.4 - - - -
214M GLU* 1.3 78.1 - - + +
216M VAL* 1.3 57.4 + - - +
218M LYS* 3.5 12.1 - - + +
219M THR* 2.7 43.8 + - + +
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Residues in contact with VAL 216 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146M TRP* 4.0 14.4 - - + -
149M LYS* 4.2 27.1 - - + +
150M MSE 5.3 4.3 - - + -
153M LEU* 4.8 10.3 - - + -
212M VAL* 2.8 37.1 + - + +
213M LEU* 3.3 12.8 - - + +
215M ASP* 1.3 74.3 + - - +
217M GLY* 1.3 65.5 - - - +
218M LYS 3.1 1.2 + - - -
219M THR* 3.2 7.1 + - - -
220M THR* 3.2 24.1 + - - -
300N PRO* 3.7 35.9 - - + +
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Residues in contact with GLY 217 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
213M LEU 2.8 16.5 + - - -
214M GLU 3.6 6.3 - - - -
216M VAL* 1.3 74.8 - - - +
218M LYS* 1.3 56.8 + - - +
220M THR* 3.0 24.1 - - - +
221M PRO* 4.1 2.8 - - - +
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Residues in contact with LYS 218 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
214M GLU* 3.0 44.2 + - - +
215M ASP* 3.2 12.5 + - + +
216M VAL 3.1 0.2 - - - -
217M GLY* 1.3 75.4 - - - +
219M THR* 1.3 64.9 + - + +
220M THR 3.1 5.6 + - - -
221M PRO* 3.3 12.5 - - - +
222M GLN* 5.0 0.5 + - - +
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Residues in contact with THR 219 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145M PRO* 6.3 2.2 - - + -
146M TRP* 4.4 9.9 - - - -
149M LYS* 3.7 33.5 - - - +
215M ASP* 2.7 32.3 + - + +
216M VAL* 3.4 8.0 + - - -
218M LYS* 1.3 75.2 - - + +
220M THR* 1.3 63.5 + - - +
221M PRO* 3.5 1.6 - - - -
222M GLN* 3.1 22.6 + - + +
223M TYR* 3.2 12.5 + - - +
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Residues in contact with THR 220 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146M TRP* 3.6 15.3 - - - -
216M VAL* 3.2 13.2 + - + +
217M GLY* 3.0 26.5 - - - +
219M THR* 1.3 75.1 - - - +
221M PRO* 1.4 71.9 - - + +
223M TYR* 3.3 2.6 - - - +
224M MSE 3.2 45.8 + - + +
299N TRP* 3.6 21.1 - - + -
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Residues in contact with PRO 221 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
217M GLY 4.1 2.2 - - - +
218M LYS* 3.3 16.8 - - - +
220M THR* 1.4 97.6 - - + +
222M GLN* 1.3 65.3 + - - +
224M MSE 3.7 12.9 - - + +
225M GLU* 3.0 27.2 + - + +
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Residues in contact with GLN 222 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145M PRO* 6.5 0.9 - - + -
218M LYS 5.0 0.4 + - - +
219M THR* 3.1 18.4 + - + +
221M PRO* 1.3 80.0 - - - +
223M TYR* 1.3 61.0 + - - +
225M GLU* 3.0 14.6 + - - +
226M ASN* 2.6 52.3 + - - +
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Residues in contact with TYR 223 (chain M).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19M PHE 4.8 0.3 + - - -
20M TRP* 2.6 45.4 + + - -
142M ALA 4.1 11.2 - - - -
143M GLN* 3.5 28.3 + - + -
145M PRO* 6.4 2.2 - - - -
146M TRP* 3.5 61.1 + + + -
219M THR 3.2 8.3 + - - +
220M THR 3.3 9.6 - - - +
222M GLN* 1.3 76.9 - - - +
224M MSE 1.3 64.5 + - + +
226M ASN* 3.2 7.0 + - - +
227M MSE 2.9 37.0 + - + +
299N TRP* 3.7 28.0 - + - -
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Residues in contact with MSE 224 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20M TRP* 3.9 32.7 - - + -
220M THR* 3.2 42.7 + - + +
221M PRO* 3.8 10.3 - - + +
222M GLN 3.2 1.0 - - - -
223M TYR* 1.3 79.1 - - + +
225M GLU* 1.3 65.3 - - - +
226M ASN 2.8 0.5 + - - -
227M MSE 2.9 1.0 + - - +
228M GLU* 2.7 28.0 + - + +
299N TRP* 3.4 30.5 - - + +
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Residues in contact with GLU 225 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
221M PRO* 3.0 15.0 + - + +
222M GLN* 3.0 15.0 + - - +
224M MSE 1.3 75.5 - - - +
226M ASN* 1.3 63.2 + - - +
228M GLU* 3.8 9.0 - - - +
229M GLN* 3.0 44.9 + - - +
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Residues in contact with ASN 226 (chain M).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142M ALA* 3.4 32.5 - - + +
145M PRO* 5.7 4.0 - - - +
222M GLN* 2.6 51.8 + - - +
223M TYR* 3.6 7.0 - - - +
224M MSE 2.8 1.2 + - - -
225M GLU* 1.3 80.8 - - - +
227M MSE 1.3 65.6 + - - +
229M GLN* 3.4 10.3 + - - +
230M VAL* 3.4 27.7 + - - +
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Residues in contact with MSE 227 (chain M).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19M PHE* 3.6 29.0 - - + +
20M TRP* 3.5 24.7 - - + -
25M TYR* 5.5 2.9 - - - -
139M PHE* 3.5 38.0 - - + +
142M ALA* 3.1 39.9 - - + +
143M GLN* 3.8 28.5 - - - -
223M TYR* 2.9 24.6 + - + +
224M MSE 3.6 0.2 - - - +
226M ASN* 1.3 75.6 - - - +
228M GLU* 1.3 63.4 + - - +
230M VAL* 3.5 1.1 + - + -
231M PHE* 3.2 24.8 + - - +
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Residues in contact with GLU 228 (chain M).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
20M TRP* 4.9 5.0 - - + -
224M MSE 2.7 19.0 + - + +
225M GLU* 3.8 10.1 - - - +
227M MSE 1.3 78.5 - - - +
229M GLN* 1.3 56.3 + - + +
231M PHE* 3.7 9.7 - - - +
232M GLU* 3.0 40.9 + - + +
288N ARG* 2.7 38.7 + - - -
293N PRO* 3.4 19.6 - - - +
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Residues in contact with GLN 229 (chain M).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
225M GLU* 3.0 35.0 + - - +
226M ASN* 3.7 10.6 + - - +
227M MSE 3.3 0.4 - - - -
228M GLU* 1.3 74.6 - - + +
230M VAL* 1.3 66.1 + - + +
232M GLU* 3.6 6.8 + - - +
233M GLN* 3.4 23.9 + - - +
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Residues in contact with VAL 230 (chain M).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135M ALA* 4.2 7.2 - - - +
138M GLY* 3.6 28.5 - - - +
139M PHE* 3.5 42.6 - - + +
142M ALA* 4.4 5.8 - - + -
226M ASN 3.4 15.4 + - - +
227M MSE 4.0 4.0 - - - +
228M GLU 3.3 0.2 - - - -
229M GLN* 1.3 73.9 - - + +
231M PHE* 1.3 59.9 + - - +
233M GLN* 2.7 32.7 + - + +
234M CYS* 3.2 13.4 + - - -
----------------------------------------------------------
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Residues in contact with PHE 231 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
19M PHE* 4.8 3.6 - + + -
28M THR* 4.0 28.0 - - + -
139M PHE* 3.7 13.2 - - + -
227M MSE 3.2 16.5 + - - +
228M GLU* 3.7 11.0 - - - +
230M VAL* 1.3 79.6 - - - +
232M GLU* 1.3 63.8 + - - +
234M CYS* 3.0 19.4 + - - +
235M GLN* 3.0 56.8 + - + +
287N PHE* 4.3 7.4 - + - -
288N ARG* 3.9 27.1 - - + -
292N GLY* 4.1 6.1 - - - -
293N PRO* 3.5 42.0 - - + -
----------------------------------------------------------
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Residues in contact with GLU 232 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
228M GLU* 3.0 28.5 + - + +
229M GLN* 3.8 7.9 - - - +
230M VAL 3.1 0.4 - - - -
231M PHE* 1.3 80.6 - - + +
233M GLN* 1.3 71.5 + - - +
235M GLN* 3.6 13.6 + - - +
236M GLN* 3.3 35.0 + - - +
288N ARG* 5.8 0.2 + - - -
----------------------------------------------------------
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Residues in contact with GLN 233 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
229M GLN 3.4 15.8 + - - +
230M VAL* 2.7 15.4 + - + +
232M GLU* 1.3 83.6 - - - +
234M CYS* 1.3 63.1 + - - +
236M GLN* 3.2 35.6 + - - +
237M PHE* 3.2 13.5 + - - +
----------------------------------------------------------
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Residues in contact with CYS 234 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
28M THR* 3.9 29.6 - - + -
31M ARG* 3.8 9.7 + - - +
32M ILE* 4.2 13.5 - - + +
135M ALA* 4.1 26.0 - - - -
139M PHE* 4.1 8.5 - - - -
230M VAL* 3.2 15.1 + - - -
231M PHE* 3.0 9.8 + - + +
233M GLN* 1.3 77.7 - - - +
235M GLN* 1.3 60.4 - - + +
236M GLN 3.1 0.4 - - - -
237M PHE* 3.4 7.8 + - - +
238M GLU* 3.0 28.9 + - - +
----------------------------------------------------------
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Residues in contact with GLN 235 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31M ARG* 2.7 35.3 - - - +
231M PHE* 3.0 52.4 + - + +
232M GLU* 3.9 16.8 - - - +
233M GLN 3.3 0.2 - - - -
234M CYS* 1.3 75.7 - - - +
236M GLN* 1.3 60.8 + - - +
238M GLU 3.8 0.2 - - - -
239M GLU* 2.9 28.9 + - - +
284N LEU* 3.5 45.2 + - + +
287N PHE* 3.9 8.1 - - - +
288N ARG* 4.4 2.9 - - - +
----------------------------------------------------------
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Residues in contact with GLN 236 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
232M GLU* 3.3 26.8 + - - +
233M GLN* 3.2 34.3 + - - +
234M CYS 3.1 0.8 - - - -
235M GLN* 1.3 79.1 - - - +
237M PHE* 1.3 61.4 + - - +
239M GLU* 3.4 8.0 + - + +
240M LYS* 3.2 26.9 + - - +
----------------------------------------------------------
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Residues in contact with PHE 237 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
32M ILE* 4.2 26.7 - - + -
116M TRP* 5.4 5.5 - + - -
120M ALA* 3.4 37.2 - - + -
121M TYR* 4.0 29.4 - + - -
131M GLU* 3.7 21.5 - - + -
233M GLN 3.2 10.5 + - - +
234M CYS* 3.6 11.0 - - - +
236M GLN* 1.3 79.5 - - - +
238M GLU* 1.3 62.5 + - + +
240M LYS* 3.3 36.2 + - + +
241M ARG* 3.3 9.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 238 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31M ARG* 3.4 55.0 + - + +
234M CYS 3.0 9.5 + - - +
235M GLN 4.3 0.7 - - - +
237M PHE* 1.3 75.7 - - + +
239M GLU* 1.3 63.6 + - - +
241M ARG* 2.8 47.3 + - - -
242M LEU* 3.2 24.9 + - + +
77N TYR* 2.7 28.2 + - - +
284N LEU* 3.9 12.3 - - + -
----------------------------------------------------------
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Residues in contact with GLU 239 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
235M GLN 2.9 19.8 + - - +
236M GLN* 3.5 8.8 - - - +
237M PHE 3.2 0.2 - - - -
238M GLU* 1.3 74.8 - - - +
240M LYS* 1.3 68.8 + - - +
241M ARG 3.2 0.2 + - - -
242M LEU* 3.3 5.1 + - - +
243M VAL* 2.9 37.5 + - - +
280N ALA* 4.2 13.5 - - + -
281N GLN* 3.5 26.5 + - - +
284N LEU* 3.5 23.5 - - + +
----------------------------------------------------------
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Residues in contact with LYS 240 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116M TRP* 4.2 16.2 - - + +
236M GLN 3.2 14.2 + - - +
237M PHE* 3.3 25.0 - - + +
239M GLU* 1.3 83.4 + - - +
241M ARG* 1.3 62.0 + - - +
243M VAL* 3.1 7.7 + - - +
244M PHE* 3.0 22.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 241 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
35M GLY* 3.7 30.3 + - - +
38M LEU* 3.3 24.7 - - - +
39M CYS* 5.2 4.7 - - - -
116M TRP* 3.4 34.7 - - + -
121M TYR* 4.5 6.1 - - - +
237M PHE* 3.3 11.7 + - + +
238M GLU* 2.8 50.0 + - - +
239M GLU 3.2 0.4 - - - -
240M LYS* 1.3 78.2 - - - +
242M LEU* 1.3 67.8 + - - +
244M PHE* 3.1 6.2 + - + +
245M LEU* 2.8 46.1 + - + +
76N GLN* 2.8 34.6 + - - +
77N TYR* 4.8 1.8 - - - -
----------------------------------------------------------
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Residues in contact with LEU 242 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
238M GLU* 3.2 24.8 + - + +
239M GLU* 3.3 3.9 + - - +
241M ARG* 1.3 100.4 - - - +
243M VAL* 1.3 66.4 + - - +
245M LEU* 3.8 8.9 - - + +
246M LYS* 3.3 20.4 + - - +
76N GLN* 4.3 10.3 - - - +
77N TYR* 4.7 4.7 - - + +
80N LEU* 3.6 29.6 - - + +
280N ALA* 3.9 35.2 - - + +
283N ASP* 4.1 15.7 - - + +
284N LEU* 4.3 12.3 - - + -
----------------------------------------------------------
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Residues in contact with VAL 243 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
239M GLU* 2.9 30.6 + - - +
240M LYS* 3.4 11.2 - - - +
242M LEU* 1.3 78.9 - - - +
244M PHE* 1.3 67.4 + - + +
246M LYS* 3.3 6.4 + - - +
247M GLU* 3.2 20.5 + - + +
280N ALA* 4.3 16.6 - - + -
----------------------------------------------------------
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Residues in contact with PHE 244 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39M CYS* 5.6 3.4 - - - -
112M LYS* 3.6 47.3 - - + -
113M VAL* 3.8 13.7 - - + -
116M TRP* 3.4 63.7 - + + +
240M LYS 3.0 12.2 + - - +
241M ARG* 3.5 8.1 - - + +
243M VAL* 1.3 80.8 - - + +
245M LEU* 1.3 60.3 + - + +
247M GLU* 2.9 15.4 + - - +
248M VAL* 2.9 45.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 245 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42M LEU* 3.9 30.3 - - + -
241M ARG* 2.8 31.9 + - + +
242M LEU* 3.8 9.2 - - + +
243M VAL 3.3 0.2 - - - -
244M PHE* 1.3 77.9 - - + +
246M LYS* 1.3 55.2 + - - +
248M VAL* 3.3 4.5 + - - +
249M LEU* 3.1 38.8 + - + +
76N GLN* 3.5 28.3 - - - +
80N LEU* 3.2 30.5 - - + +
84N TRP* 5.8 8.7 - - + -
----------------------------------------------------------
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Residues in contact with LYS 246 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
242M LEU 3.3 10.5 + - - +
243M VAL* 3.3 11.1 + - - +
245M LEU* 1.3 74.2 - - - +
247M GLU* 1.3 68.6 + - - +
249M LEU* 3.3 6.8 + - - +
250M LEU* 3.0 30.3 + - + +
80N LEU* 3.9 12.7 - - + +
275N ILE* 4.5 13.7 - - + +
276N ARG* 3.6 28.4 + - - +
278N ALA* 2.5 41.0 + - + +
279N ASP* 4.8 1.9 - - - +
280N ALA 5.9 2.5 - - - +
----------------------------------------------------------
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Residues in contact with GLU 247 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112M LYS* 2.9 31.9 + - - +
243M VAL* 3.2 10.3 + - + +
244M PHE* 2.9 18.3 + - - +
246M LYS* 1.3 82.5 - - - +
248M VAL* 1.3 57.9 + - + +
250M LEU* 3.5 8.4 - - + +
251M ASP* 2.8 30.6 + - - +
----------------------------------------------------------
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Residues in contact with VAL 248 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42M LEU* 4.4 10.1 - - + -
109M ASP* 4.6 12.8 - - + +
112M LYS* 4.3 11.2 - - + -
113M VAL* 4.1 21.3 - - + -
244M PHE* 2.9 48.7 + - + +
245M LEU* 3.7 7.6 - - - +
246M LYS 3.1 0.4 - - - -
247M GLU* 1.3 74.8 - - - +
249M LEU* 1.3 54.7 + - - +
251M ASP* 2.7 10.8 + - + +
252M ILE* 2.6 53.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 249 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42M LEU* 4.1 26.0 - - + -
245M LEU* 3.1 26.4 + - + +
246M LYS* 3.7 7.6 - - - +
248M VAL* 1.3 72.2 - - - +
250M LEU* 1.3 54.7 - - - +
252M ILE* 2.7 30.0 + - + +
253M LYS* 2.9 13.2 + - - +
80N LEU* 4.3 14.1 - - + -
83N ALA* 3.7 19.1 - - + +
84N TRP* 3.6 42.6 - - + +
87N ILE* 4.4 12.2 - - + +
275N ILE* 3.7 20.8 - - + +
----------------------------------------------------------
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Residues in contact with LEU 250 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
246M LYS* 3.0 20.2 + - + +
247M GLU* 3.5 11.4 - - - +
249M LEU* 1.3 73.0 - - - +
251M ASP* 1.3 67.7 + - - +
252M ILE 3.2 0.3 + - - -
253M LYS* 3.4 9.3 + - + +
254M ARG* 3.3 37.4 + - - +
272N GLU* 4.6 11.7 - - + +
275N ILE* 2.9 39.5 - - + -
276N ARG* 3.5 47.6 - - + +
----------------------------------------------------------
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Residues in contact with ASP 251 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109M ASP* 3.3 17.4 - - - +
112M LYS* 3.1 37.1 + - - +
247M GLU* 2.8 22.1 + - - +
248M VAL* 2.7 20.3 + - - +
250M LEU* 1.3 74.2 - - - +
252M ILE* 1.3 60.6 + - - +
254M ARG* 3.0 28.8 + - - +
255M HIS* 3.3 22.8 + - + -
----------------------------------------------------------
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Residues in contact with ILE 252 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
42M LEU* 4.3 15.3 - - + -
46M VAL* 3.6 29.6 - - + -
105M LEU* 4.4 8.3 - - + -
109M ASP* 3.7 26.2 - - + +
248M VAL* 2.6 34.7 + - + +
249M LEU* 2.7 15.7 + - + +
251M ASP* 1.3 71.5 - - - +
253M LYS* 1.3 63.7 + - - +
255M HIS* 2.9 14.3 + - - +
256M LEU* 3.0 28.8 + - + +
87N ILE* 3.7 23.1 - - + -
----------------------------------------------------------
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Residues in contact with LYS 253 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
249M LEU 2.9 9.9 + - - +
250M LEU* 3.6 14.6 - - + +
252M ILE* 1.3 75.4 - - - +
254M ARG* 1.3 73.4 + - + +
256M LEU* 3.2 13.3 + - - +
257M ASN* 3.2 18.6 + - - +
260M GLU* 2.6 27.1 + - - +
87N ILE* 5.0 0.2 - - - +
268N TYR* 3.9 22.2 - - + -
271N LEU* 3.6 35.2 - - + -
272N GLU* 2.7 46.5 + - + +
275N ILE* 4.3 8.3 - - + -
----------------------------------------------------------
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Residues in contact with ARG 254 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
250M LEU* 3.4 26.8 + - - +
251M ASP* 3.0 28.3 + - - +
253M LYS* 1.3 83.8 - - + +
255M HIS* 1.3 71.6 + - + +
256M LEU 3.3 0.2 + - - -
257M ASN* 3.4 15.4 + - - +
260M GLU* 4.0 32.2 + - - +
272N GLU* 5.9 0.8 + - - -
276N ARG* 4.4 17.8 - - - +
----------------------------------------------------------
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Residues in contact with HIS 255 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101M VAL* 3.4 26.6 - - - +
104M ASN* 3.4 44.1 + - + +
105M LEU* 4.2 14.1 - - + +
108M GLU* 4.4 14.2 - - + +
109M ASP* 2.8 34.2 + - - -
251M ASP* 3.3 18.2 + - + -
252M ILE 2.9 7.3 + - - +
254M ARG* 1.3 85.4 - - + +
256M LEU* 1.3 59.7 + - - +
257M ASN 3.7 1.2 + - - -
258M LEU* 5.1 1.4 - - - +
----------------------------------------------------------
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Residues in contact with LEU 256 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
49M ARG* 3.8 35.2 - - + +
53M GLU* 5.0 0.4 - - - +
101M VAL* 4.4 11.9 - - + +
105M LEU* 4.3 18.8 - - + -
252M ILE* 3.0 24.6 + - + +
253M LYS* 3.2 9.1 + - - +
255M HIS* 1.3 77.9 - - - +
257M ASN* 1.3 59.9 + - - +
258M LEU* 3.4 13.0 + - - +
87N ILE* 3.7 20.2 - - + -
90N GLU* 3.5 30.3 - - + +
264N TYR* 4.7 1.0 + - - -
268N TYR* 3.4 24.4 + - + +
271N LEU* 4.9 0.9 - - + -
----------------------------------------------------------
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Residues in contact with ASN 257 (chain M).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
253M LYS* 3.2 18.8 + - - +
254M ARG 3.4 10.0 + - - +
255M HIS 5.0 0.4 - - - +
256M LEU* 1.3 72.4 - - - +
258M LEU* 1.3 65.6 + - - +
259M ALA* 2.9 29.8 - - - +
260M GLU* 3.0 44.7 + - - +
261M ASN* 4.2 1.9 + - - +
264N TYR* 4.9 0.4 - - - -
265N ILE* 5.7 0.6 - - - +
268N TYR* 3.5 44.1 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il