Contacts of the helix formed by residues 106 - 189 (chain A) in PDB entry 3S4R
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 106 (chain A).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL* 1.3 81.3 - - - +
107A LEU* 1.3 78.0 + - - +
108A GLN* 3.4 14.4 - - + +
109A GLU* 3.1 13.0 + - + +
110A LEU* 3.0 17.9 + - - +
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Residues in contact with LEU 107 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL 3.9 2.9 + - - +
106A GLU* 1.3 83.2 + - - +
108A GLN* 1.3 63.8 + - - +
109A GLU 2.9 1.6 + - - -
110A LEU* 3.0 31.6 + - + +
111A ASN* 3.0 17.8 + - - +
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Residues in contact with GLN 108 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106A GLU* 3.4 10.7 - - + +
107A LEU* 1.3 76.6 - - - +
109A GLU* 1.3 57.2 + - - +
111A ASN* 3.7 24.0 - - - +
112A ASP* 3.2 25.6 + - - +
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Residues in contact with GLU 109 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL* 3.3 19.5 - - + -
106A GLU* 3.1 21.2 + - + +
107A LEU 2.9 0.2 - - - -
108A GLN* 1.3 76.5 - - - +
110A LEU* 1.3 65.0 + - - +
111A ASN 3.2 1.1 - - - -
112A ASP* 3.0 33.4 + - - +
113A ARG* 3.1 40.6 + - - +
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Residues in contact with LEU 110 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL* 3.5 37.7 - - + +
106A GLU 3.0 7.4 + - - +
107A LEU* 3.0 28.0 + - + +
109A GLU* 1.3 77.7 - - - +
111A ASN* 1.3 62.6 + - - +
112A ASP 3.3 0.2 + - - -
113A ARG* 3.3 14.3 + - - +
114A PHE* 3.0 51.8 + - + -
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Residues in contact with ASN 111 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A LEU* 3.0 14.3 + - - +
108A GLN* 3.7 25.2 - - - +
109A GLU 3.2 0.4 - - - -
110A LEU* 1.3 76.6 - - - +
112A ASP* 1.3 58.3 + - - +
114A PHE* 3.8 5.5 - - - +
115A ALA* 2.8 32.5 + - - +
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Residues in contact with ASP 112 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A GLN* 3.2 26.6 + - - +
109A GLU* 3.0 25.2 + - - +
111A ASN* 1.3 78.2 - - - +
113A ARG* 1.3 57.8 + - + +
115A ALA* 3.0 8.1 + - - +
116A ASN* 2.9 29.6 + - - +
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Residues in contact with ARG 113 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL* 3.6 28.0 - - - +
109A GLU* 3.1 43.3 + - - +
110A LEU* 3.8 17.6 - - + +
112A ASP* 1.3 75.8 - - + +
114A PHE* 1.3 62.7 + - + +
116A ASN* 3.5 6.7 + - - +
117A LEU* 3.0 27.5 + - - +
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Residues in contact with PHE 114 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110A LEU* 3.0 51.1 + - + +
111A ASN* 4.3 5.8 - - - +
113A ARG* 1.3 78.5 - - + +
115A ALA* 1.3 60.4 + - - +
116A ASN 3.2 0.2 - - - -
117A LEU* 3.8 23.9 - - + +
118A ILE* 3.1 35.6 + - + +
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Residues in contact with ALA 115 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111A ASN 2.8 21.2 + - - +
112A ASP* 3.0 8.3 + - - +
114A PHE* 1.3 79.1 - - - +
116A ASN* 1.3 61.4 + - - +
118A ILE* 3.6 12.4 - - - +
119A ASP* 3.3 24.9 + - - +
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Residues in contact with ASN 116 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A ASP 2.9 14.0 + - - +
113A ARG* 3.8 7.6 + - - +
115A ALA* 1.3 78.5 - - - +
117A LEU* 1.3 60.0 + - - +
118A ILE 3.2 0.2 - - - -
119A ASP* 3.1 21.4 + - - +
120A LYS* 3.0 42.7 + - - +
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Residues in contact with LEU 117 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113A ARG 3.0 18.6 + - - +
114A PHE* 4.1 27.8 - - + +
116A ASN* 1.3 78.0 - - - +
118A ILE* 1.3 55.5 + - + +
120A LYS* 3.3 22.4 + - + -
121A VAL* 2.9 43.2 + - + +
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Residues in contact with ILE 118 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114A PHE* 3.1 28.3 + - + +
115A ALA* 3.6 10.5 - - - +
117A LEU* 1.3 74.3 - - + +
119A ASP* 1.3 64.4 + - - +
121A VAL* 4.0 6.1 - - - +
122A ARG* 3.1 37.0 + - - +
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Residues in contact with ASP 119 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115A ALA 3.3 14.2 + - - +
116A ASN* 3.1 24.0 + - - +
118A ILE* 1.3 77.6 - - - +
120A LYS* 1.3 64.7 + - + +
122A ARG* 3.0 37.8 + - - +
123A PHE* 3.0 21.5 + - - +
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Residues in contact with LYS 120 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116A ASN* 3.0 32.3 + - - +
117A LEU* 3.6 24.0 - - + +
119A ASP* 1.3 79.8 - - + +
121A VAL* 1.3 63.4 + - + +
123A PHE* 3.2 10.6 + - - +
124A LEU* 3.1 21.3 + - - +
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Residues in contact with VAL 121 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117A LEU* 2.9 36.1 + - + +
118A ILE* 4.0 7.0 - - - +
119A ASP 3.1 0.4 - - - -
120A LYS* 1.3 73.0 - - + +
122A ARG* 1.3 68.7 + - - +
124A LEU* 3.1 12.4 + - + +
125A GLU* 2.9 35.9 + - + +
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Residues in contact with ARG 122 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118A ILE* 3.1 25.0 + - + +
119A ASP* 3.0 45.5 + - - +
121A VAL* 1.3 76.8 - - - +
123A PHE* 1.3 62.5 + - - +
125A GLU* 3.2 21.9 + - + +
126A GLN* 3.2 47.7 + - + +
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Residues in contact with PHE 123 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119A ASP 3.0 12.1 + - - +
120A LYS* 3.3 13.9 - - - +
121A VAL 3.0 0.2 - - - -
122A ARG* 1.3 75.5 - - - +
124A LEU* 1.3 67.7 + - + +
126A GLN* 3.0 22.3 + - + +
127A GLN* 3.0 59.0 + - + +
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Residues in contact with LEU 124 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120A LYS 3.1 12.9 + - - +
121A VAL* 3.5 13.9 - - + +
123A PHE* 1.3 78.2 - - + +
125A GLU* 1.3 63.8 + - - +
126A GLN 3.2 0.3 + - - -
127A GLN* 3.2 7.1 + - + -
128A ASN* 2.9 42.2 + - - +
202A GOL 3.9 32.1 - - - +
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Residues in contact with GLU 125 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121A VAL* 2.9 23.7 + - + +
122A ARG* 3.3 32.1 + - + +
123A PHE 3.2 0.2 - - - -
124A LEU* 1.3 78.4 - - - +
126A GLN* 1.3 56.1 + - + +
128A ASN* 3.8 6.6 - - - +
129A LYS* 3.0 26.7 + - - +
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Residues in contact with GLN 126 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122A ARG* 3.2 45.3 - - + +
123A PHE* 3.0 25.0 + - + +
125A GLU* 1.3 74.5 - - + +
127A GLN* 1.3 75.3 + - - +
129A LYS* 3.2 12.4 - - + +
130A ILE* 3.1 23.1 + - - +
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Residues in contact with GLN 127 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123A PHE* 3.0 55.0 + - + +
124A LEU* 3.5 12.6 - - + +
126A GLN* 1.3 73.8 - - - +
128A ASN* 1.3 68.0 + - - +
129A LYS 2.7 2.5 + - - -
130A ILE* 2.8 37.7 + - - +
131A LEU* 3.0 12.5 + - - +
202A GOL 4.6 16.8 - - - +
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Residues in contact with ASN 128 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124A LEU* 2.9 30.4 + - - +
125A GLU* 3.8 6.8 - - - +
127A GLN* 1.3 76.2 - - - +
129A LYS* 1.3 55.9 + - - +
131A LEU* 3.5 11.6 - - - +
132A LEU* 2.9 41.2 + - + +
202A GOL 2.3 43.3 + - - -
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Residues in contact with LYS 129 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125A GLU 3.0 15.8 + - - +
126A GLN* 3.2 15.5 - - + +
127A GLN 2.7 5.1 + - - -
128A ASN* 1.3 69.9 - - - +
130A ILE* 1.3 65.8 + - - +
132A LEU* 3.3 12.4 + - + +
133A ALA* 3.2 21.4 + - + +
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Residues in contact with ILE 130 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126A GLN 3.1 11.4 + - - +
127A GLN* 2.8 31.1 + - - +
129A LYS* 1.3 75.7 - - + +
131A LEU* 1.3 58.0 + - + +
133A ALA* 3.3 8.2 + - - +
134A GLU* 2.9 54.0 + - + +
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Residues in contact with LEU 131 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127A GLN 3.0 7.6 + - - +
128A ASN* 3.5 17.5 - - - +
130A ILE* 1.3 82.9 - - + +
132A LEU* 1.3 58.2 + - + +
134A GLU* 3.1 13.6 + - + +
135A LEU* 2.7 64.4 + - + +
202A GOL 4.9 21.3 - - - +
----------------------------------------------------------
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Residues in contact with LEU 132 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128A ASN* 2.9 30.8 + - + +
129A LYS* 3.3 9.6 + - + +
131A LEU* 1.3 80.2 - - + +
133A ALA* 1.3 56.3 + - - +
135A LEU* 3.8 11.9 - - + +
136A GLU* 3.0 28.6 + - - +
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Residues in contact with ALA 133 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129A LYS 3.2 12.8 + - - +
130A ILE* 3.6 9.2 - - - +
132A LEU* 1.3 71.7 - - - +
134A GLU* 1.3 68.7 + - + +
136A GLU* 3.2 8.9 + - - +
137A GLN* 3.1 23.3 + - - +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130A ILE* 2.9 38.9 + - + +
131A LEU* 3.6 16.8 - - + +
133A ALA* 1.3 76.1 - - + +
135A LEU* 1.3 65.9 + - + +
137A GLN* 3.2 13.5 + - - +
138A LEU* 3.1 21.1 + - - +
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Residues in contact with LEU 135 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131A LEU* 2.7 53.0 + - + +
132A LEU* 3.8 13.2 - - + +
134A GLU* 1.3 73.7 - - + +
136A GLU* 1.3 58.5 + - - +
138A LEU* 3.0 16.7 + - + +
139A LYS* 2.8 31.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 136 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132A LEU 3.0 19.4 + - - +
133A ALA* 3.2 9.4 + - - +
135A LEU* 1.3 77.2 - - - +
137A GLN* 1.3 55.9 + - - +
139A LYS* 3.6 34.7 + - - +
140A GLY* 3.2 22.0 + - - -
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Residues in contact with GLN 137 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133A ALA 3.1 11.7 + - - +
134A GLU* 3.4 14.9 - - - +
135A LEU 3.0 0.4 - - - -
136A GLU* 1.3 74.8 - - - +
138A LEU* 1.3 56.8 + - - +
140A GLY* 3.3 3.0 + - - -
141A GLN* 2.8 65.3 + - + +
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Residues in contact with LEU 138 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A GLU 3.1 10.3 + - - +
135A LEU* 3.0 21.7 + - + +
137A GLN* 1.3 76.7 - - - +
139A LYS* 1.3 69.5 + - - +
141A GLN* 3.1 20.3 + - + +
142A GLY* 2.8 18.5 + - - -
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Residues in contact with LYS 139 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
135A LEU 2.8 18.7 + - - +
136A GLU* 3.6 38.8 + - - +
138A LEU* 1.3 75.6 - - - +
140A GLY* 1.3 66.8 + - - +
142A GLY* 2.9 10.3 + - - -
143A LYS* 3.0 14.7 + - + +
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Residues in contact with GLY 140 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A GLU* 3.2 12.0 + - - -
137A GLN* 3.3 4.7 + - - -
139A LYS* 1.3 80.4 - - - +
141A GLN* 1.3 59.6 + - - +
143A LYS* 3.2 11.1 + - - +
144A SER* 3.1 21.8 + - - -
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Residues in contact with GLN 141 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137A GLN* 2.8 50.3 + - + +
138A LEU* 3.5 25.0 - - + +
139A LYS 3.0 0.2 + - - -
140A GLY* 1.3 68.7 - - - +
142A GLY* 1.3 55.8 + - - +
144A SER* 3.1 10.2 + - - -
145A ARG* 2.8 35.0 + - - +
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Residues in contact with GLY 142 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A LEU 2.8 13.3 + - - -
139A LYS* 2.9 4.7 + - - -
141A GLN* 1.3 72.1 - - - +
143A LYS* 1.3 63.5 + - - +
145A ARG* 3.8 12.0 - - - +
146A LEU* 3.2 33.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 143 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
139A LYS* 3.0 14.2 + - + +
140A GLY* 3.4 13.9 - - - +
141A GLN 3.2 0.2 - - - -
142A GLY* 1.3 73.3 - - - +
144A SER* 1.3 65.3 + - - +
146A LEU* 3.5 9.7 + - + +
147A GLY* 3.2 18.7 + - - -
139B LYS* 5.9 2.6 - - - +
143B LYS* 5.8 4.8 - - - +
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Residues in contact with SER 144 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140A GLY 3.1 12.0 + - - -
141A GLN* 3.1 12.3 + - - -
143A LYS* 1.3 76.6 - - - +
145A ARG* 1.3 63.2 + - - +
147A GLY* 3.1 3.0 + - - -
148A ASP* 3.0 37.7 + - - +
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Residues in contact with ARG 145 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A GLN 2.8 19.8 + - - +
142A GLY* 3.8 11.9 - - - +
143A LYS 3.3 0.4 - - - -
144A SER* 1.3 73.8 + - - +
146A LEU* 1.3 66.1 + - + +
148A ASP* 3.4 10.1 - - - +
149A LEU* 2.9 60.3 + - + +
----------------------------------------------------------
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Residues in contact with LEU 146 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A GLY 3.2 23.8 + - - +
143A LYS* 3.9 8.1 - - + +
144A SER 3.3 0.2 - - - -
145A ARG* 1.3 82.5 - - + +
147A GLY* 1.3 67.6 + - - +
149A LEU* 3.4 17.8 + - + +
150A TYR* 3.2 20.4 + - - +
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Residues in contact with GLY 147 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A LYS 3.2 9.0 + - - -
144A SER* 3.1 6.8 + - - -
146A LEU* 1.3 77.7 - - - +
148A ASP* 1.3 61.0 + - - +
150A TYR* 3.1 8.5 + - - +
151A GLU* 2.9 34.4 + - - +
----------------------------------------------------------
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Residues in contact with ASP 148 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144A SER* 3.0 27.0 + - - +
145A ARG* 3.4 11.6 - - - +
147A GLY* 1.3 74.0 - - - +
149A LEU* 1.3 58.3 + - + +
151A GLU* 3.1 10.6 + - - +
152A GLU* 2.9 37.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 149 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A ARG* 2.9 66.4 + - + +
146A LEU* 3.9 15.5 - - + +
147A GLY 3.2 0.6 + - - -
148A ASP* 1.3 76.9 - - + +
150A TYR* 1.3 62.3 + - - +
152A GLU* 3.6 5.0 + - + +
153A GLU* 3.1 26.2 + - - +
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Residues in contact with TYR 150 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
146A LEU 3.2 10.0 + - - +
147A GLY* 3.1 9.0 + - - +
149A LEU* 1.3 78.2 - - - +
151A GLU* 1.3 79.2 + - - +
153A GLU* 3.2 2.8 + - - +
154A MET* 3.0 52.2 + - + +
150B TYR* 3.0 60.0 + + + -
151B GLU* 5.4 0.2 - - - -
153B GLU* 3.2 22.0 + - - -
154B MET* 3.4 29.2 - - + -
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Residues in contact with GLU 151 (chain A).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
147A GLY* 2.9 29.7 + - - +
148A ASP* 3.2 14.4 - - - +
150A TYR* 1.3 95.4 - - - +
152A GLU* 1.3 65.3 + - - +
154A MET* 3.3 7.2 + - - +
155A ARG* 3.0 27.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 152 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148A ASP* 2.9 23.8 + - + +
149A LEU* 4.1 5.2 - - + +
151A GLU* 1.3 77.0 - - - +
153A GLU* 1.3 66.1 + - - +
155A ARG* 3.6 28.6 + - - +
156A GLU* 3.0 26.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 153 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A LEU 3.1 16.7 + - - +
150A TYR* 3.2 3.8 + - - +
152A GLU* 1.3 77.6 - - - +
154A MET* 1.3 57.6 + - - +
156A GLU* 3.4 22.6 + - - +
157A LEU* 3.0 40.5 + - + +
154B MET* 3.5 22.7 - - + -
158B ARG* 2.5 36.1 + - - +
----------------------------------------------------------
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Residues in contact with MET 154 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A TYR* 3.0 49.3 + - + +
151A GLU* 3.3 7.6 + - - +
153A GLU* 1.3 77.3 - - - +
155A ARG* 1.3 60.5 + - - +
157A LEU* 3.8 5.1 - - - +
158A ARG* 3.1 58.9 + - - +
153B GLU* 3.6 24.7 - - + +
154B MET* 3.7 36.6 - - + -
157B LEU* 3.9 13.8 - - + +
----------------------------------------------------------
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Residues in contact with ARG 155 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
151A GLU 3.0 17.4 + - - +
152A GLU* 3.6 28.7 + - - +
154A MET* 1.3 71.9 - - - +
156A GLU* 1.3 68.8 + - - +
157A LEU 3.2 0.3 + - - -
158A ARG* 3.2 8.5 + - - +
159A ARG* 2.9 55.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 156 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A GLU 3.0 18.3 + - - +
153A GLU* 3.4 21.5 - - - +
155A ARG* 1.3 80.5 - - - +
157A LEU* 1.3 56.9 + - + +
159A ARG* 3.5 9.0 - - + +
160A GLN* 3.0 45.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 157 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A GLU* 3.0 35.1 + - - +
154A MET* 3.8 8.5 - - - +
155A ARG 3.2 0.2 - - - -
156A GLU* 1.3 74.5 - - + +
158A ARG* 1.3 60.6 + - - +
160A GLN* 3.0 23.4 + - - +
161A VAL* 2.8 32.2 + - - +
154B MET* 3.5 35.7 - - + +
157B LEU* 3.9 27.6 - - + +
158B ARG* 4.1 32.1 - - + +
161B VAL* 4.1 6.1 - - + +
----------------------------------------------------------
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Residues in contact with ARG 158 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A MET* 3.1 48.9 + - - +
155A ARG* 3.7 5.6 - - - +
157A LEU* 1.3 70.8 - - - +
159A ARG* 1.3 70.7 + - - +
161A VAL* 3.2 9.4 + - - +
162A ASP* 2.9 24.8 + - - +
153B GLU* 5.5 4.0 + - - -
157B LEU* 3.8 29.0 - - + +
----------------------------------------------------------
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Residues in contact with ARG 159 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155A ARG* 2.9 45.7 + - + +
156A GLU* 3.5 12.6 - - + +
158A ARG* 1.3 79.2 - - - +
160A GLN* 1.3 57.3 + - + +
162A ASP* 3.2 14.6 + - - +
163A GLN* 2.8 31.2 + - - +
----------------------------------------------------------
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Residues in contact with GLN 160 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
156A GLU* 3.0 41.1 + - + +
157A LEU* 3.0 22.9 + - - +
159A ARG* 1.3 73.9 - - + +
161A VAL* 1.3 66.1 + - - +
163A GLN* 3.7 14.7 - - - +
164A LEU* 2.9 35.8 + - + +
161B VAL* 3.7 26.6 - - + +
----------------------------------------------------------
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Residues in contact with VAL 161 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A LEU 2.8 20.2 + - - +
158A ARG* 3.2 8.3 + - - +
160A GLN* 1.3 73.0 - - - +
162A ASP* 1.3 61.7 + - - +
164A LEU* 3.4 0.4 + - - -
165A THR* 2.8 40.3 + - - +
157B LEU* 3.9 26.2 - - + +
160B GLN* 3.5 35.9 - - + +
161B VAL* 3.7 18.4 - - + -
164B LEU* 3.7 9.5 - - + +
----------------------------------------------------------
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Residues in contact with ASP 162 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158A ARG 2.9 13.2 + - - +
159A ARG* 3.3 21.3 + - - +
161A VAL* 1.3 81.2 - - - +
163A GLN* 1.3 67.9 + - - +
165A THR* 3.1 12.2 + - - -
166A ASN* 3.2 32.4 + - - +
----------------------------------------------------------
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Residues in contact with GLN 163 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159A ARG 2.8 18.8 + - - +
160A GLN* 3.7 16.3 - - - +
162A ASP* 1.3 76.4 + - - +
164A LEU* 1.3 63.8 + - + +
166A ASN* 3.2 6.7 + - - +
167A ASP* 2.9 44.9 + - - +
----------------------------------------------------------
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Residues in contact with LEU 164 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A GLN* 2.9 30.4 + - + +
161A VAL 4.0 2.0 - - - +
163A GLN* 1.3 79.3 - - + +
165A THR* 1.3 57.2 + - - +
167A ASP* 3.7 4.5 - - + +
168A LYS* 2.9 32.9 + - - +
161B VAL* 3.8 29.8 - - + +
164B LEU* 4.1 18.1 - - + +
165B THR* 3.4 34.3 - - + +
168B LYS* 4.1 27.7 - - + +
----------------------------------------------------------
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Residues in contact with THR 165 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A VAL* 2.8 31.0 + - - +
162A ASP* 3.1 6.3 + - - -
164A LEU* 1.3 75.8 - - - +
166A ASN* 1.3 62.8 + - - +
168A LYS* 4.1 4.7 - - - +
169A ALA* 3.3 23.2 + - - +
160B GLN* 5.1 1.0 + - - -
164B LEU* 3.4 25.0 - - + +
----------------------------------------------------------
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Residues in contact with ASN 166 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162A ASP* 3.2 34.0 + - - +
163A GLN* 3.6 6.7 + - - +
165A THR* 1.3 81.5 - - - +
167A ASP* 1.3 67.6 + - - +
168A LYS 3.1 1.6 - - - -
169A ALA* 3.1 6.2 + - - +
170A ARG* 3.0 28.2 + - + +
----------------------------------------------------------
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Residues in contact with ASP 167 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A GLN* 2.9 34.6 + - - +
164A LEU* 3.7 8.3 - - - +
166A ASN* 1.3 77.8 - - - +
168A LYS* 1.3 58.1 + - - +
170A ARG* 3.7 29.0 + - - +
171A VAL* 3.1 27.4 + - - +
168B LYS* 2.6 36.1 + - - +
----------------------------------------------------------
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Residues in contact with LYS 168 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164A LEU 2.9 18.0 + - - +
165A THR* 4.1 5.4 - - - +
167A ASP* 1.3 74.0 - - - +
169A ALA* 1.3 66.7 + - - +
171A VAL* 3.1 10.3 - - + +
172A GLU* 3.1 47.3 + - + +
164B LEU* 4.2 22.9 - - + +
167B ASP* 2.8 44.8 + - + +
168B LYS* 4.0 23.5 - - + +
171B VAL* 5.0 1.6 - - + -
----------------------------------------------------------
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Residues in contact with ALA 169 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165A THR 3.3 16.6 + - - +
166A ASN* 3.1 8.3 + - - +
168A LYS* 1.3 78.0 - - - +
170A ARG* 1.3 64.9 + - - +
172A GLU* 3.5 12.9 + - - +
173A VAL* 3.1 25.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 170 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
166A ASN* 3.0 14.5 + - + +
167A ASP* 3.7 35.3 + - - +
169A ALA* 1.3 76.0 - - - +
171A VAL* 1.3 57.3 + - - +
173A VAL* 2.6 31.7 + - - +
174A GLU* 2.8 45.6 + - + +
168B LYS* 5.6 2.0 - - - +
175B ARG* 5.8 2.6 - - - +
----------------------------------------------------------
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Residues in contact with VAL 171 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
167A ASP 3.1 17.9 + - - +
168A LYS* 3.1 22.0 - - - +
170A ARG* 1.3 80.9 - - - +
172A GLU* 1.3 56.5 + - - +
174A GLU* 3.8 11.0 - - - +
175A ARG* 2.9 28.8 + - - +
168B LYS* 4.2 14.8 - - + -
171B VAL* 3.7 19.1 - - + +
172B GLU* 3.4 33.0 - - + +
175B ARG* 3.9 21.7 - - - +
----------------------------------------------------------
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Residues in contact with GLU 172 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168A LYS* 3.1 50.5 + - - +
169A ALA* 3.5 9.5 - - - +
170A ARG 3.1 0.2 + - - -
171A VAL* 1.3 76.7 - - - +
173A VAL* 1.3 62.4 + - + +
175A ARG* 3.4 24.7 + - - +
176A ASP* 2.9 32.0 + - - +
167B ASP* 4.8 0.7 - - - +
171B VAL* 3.6 26.3 - - + +
----------------------------------------------------------
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Residues in contact with VAL 173 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169A ALA 3.1 15.2 + - - +
170A ARG* 2.6 19.3 + - - +
172A GLU* 1.3 69.5 - - + +
174A GLU* 1.3 69.3 + - + +
176A ASP* 3.0 10.1 + - - +
177A ASN* 2.9 40.0 + - - +
----------------------------------------------------------
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Residues in contact with GLU 174 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170A ARG* 2.8 45.6 + - - +
171A VAL* 3.8 10.1 - - - +
173A VAL* 1.3 76.0 - - + +
175A ARG* 1.3 52.3 + - - +
177A ASN* 3.3 9.9 + - - +
178A LEU* 2.7 42.8 + - + +
175B ARG* 2.9 39.7 + - + -
----------------------------------------------------------
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Residues in contact with ARG 175 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171A VAL 2.9 17.4 + - - +
172A GLU* 3.5 29.8 + - - +
174A GLU* 1.3 76.4 - - - +
176A ASP* 1.3 90.7 + - - +
178A LEU* 3.2 2.5 + - - +
179A ALA* 2.9 25.3 + - + +
171B VAL* 3.9 16.4 - - - +
174B GLU* 3.2 49.4 + - + -
175B ARG* 3.9 20.6 - - + +
178B LEU* 3.4 14.0 - - + +
----------------------------------------------------------
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Residues in contact with ASP 176 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172A GLU* 2.9 19.4 + - - +
173A VAL* 3.0 11.7 + - - +
175A ARG* 1.3 105.2 + - - +
177A ASN* 1.3 67.1 + - - +
179A ALA* 3.0 10.9 + - - +
180A GLU* 3.0 22.6 + - - +
----------------------------------------------------------
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Residues in contact with ASN 177 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173A VAL* 2.9 32.6 + - - +
174A GLU* 3.3 13.0 - - - +
176A ASP* 1.3 71.6 - - - +
178A LEU* 1.3 62.1 + - + +
180A GLU* 3.3 14.3 + - - +
181A ASP* 3.1 33.3 + - - +
----------------------------------------------------------
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Residues in contact with LEU 178 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
174A GLU* 2.7 23.6 + - + +
175A ARG 3.8 2.5 - - - +
177A ASN* 1.3 70.9 - - + +
179A ALA* 1.3 66.8 + - - +
181A ASP* 3.9 7.2 - - - +
182A ILE* 3.0 28.9 + - - +
175B ARG* 3.6 42.0 - - + +
178B LEU* 3.7 20.0 - - + +
179B ALA* 4.2 13.9 - - + +
182B ILE* 3.9 35.0 - - + -
186B ARG* 5.8 0.7 - - - +
----------------------------------------------------------
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Residues in contact with ALA 179 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175A ARG* 2.9 14.4 + - + +
176A ASP* 3.1 14.1 - - - +
178A LEU* 1.3 77.9 - - - +
180A GLU* 1.3 62.2 + - - +
182A ILE* 3.4 5.5 + - - +
183A MET* 3.0 28.4 + - + +
178B LEU* 3.7 13.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 180 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176A ASP 3.0 11.0 + - - +
177A ASN* 3.5 18.7 - - - +
179A ALA* 1.3 75.3 - - - +
181A ASP* 1.3 73.5 + - - +
183A MET* 3.0 12.2 + - - +
184A ARG* 3.0 34.9 + - + +
----------------------------------------------------------
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Residues in contact with ASP 181 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
177A ASN* 3.1 20.7 + - - +
178A LEU* 4.0 9.0 - - + +
180A GLU* 1.3 85.6 - - - +
182A ILE* 1.3 56.3 + - - +
184A ARG* 3.7 7.8 + - - +
185A LEU* 3.0 30.1 + - - +
182B ILE* 4.5 12.8 - - + -
186B ARG* 4.5 17.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 182 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A LEU 3.0 18.8 + - - +
179A ALA* 3.7 4.7 - - - +
181A ASP* 1.3 73.6 - - - +
183A MET* 1.3 62.6 + - + +
185A LEU* 2.9 7.3 + - - +
186A ARG* 2.9 62.4 + - - +
178B LEU* 3.4 32.5 - - + +
181B ASP* 3.3 31.0 - - + +
182B ILE* 3.1 27.6 - - + +
185B LEU* 4.1 6.9 - - + +
----------------------------------------------------------
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Residues in contact with MET 183 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179A ALA* 3.0 20.8 + - + +
180A GLU* 3.5 7.4 - - - +
182A ILE* 1.3 81.1 - - - +
184A ARG* 1.3 58.8 + - + +
186A ARG* 3.2 10.3 + - - +
187A GLU* 3.1 38.1 + - + +
----------------------------------------------------------
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Residues in contact with ARG 184 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180A GLU* 3.0 28.4 + - + +
181A ASP* 4.2 7.0 - - - +
183A MET* 1.3 76.4 - - + +
185A LEU* 1.3 57.8 - - - +
187A GLU* 3.2 28.7 - - + +
188A LYS* 3.5 29.9 + - + +
----------------------------------------------------------
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Residues in contact with LEU 185 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181A ASP 3.0 19.2 + - - +
182A ILE* 2.9 6.6 + - - +
184A ARG* 1.3 74.8 - - - +
186A ARG* 1.3 64.6 + - - +
187A GLU 3.2 1.3 - - - -
188A LYS* 3.5 13.6 + - + +
189A LEU* 3.5 34.3 + - + +
182B ILE* 4.3 14.1 - - + +
185B LEU* 3.7 32.8 - - + +
186B ARG* 3.8 31.2 - - + +
189B LEU* 4.4 20.2 - - + -
----------------------------------------------------------
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Residues in contact with ARG 186 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A ILE* 2.9 39.1 + - - +
183A MET* 3.5 11.9 - - - +
185A LEU* 1.3 74.6 - - - +
187A GLU* 1.3 63.5 + - - +
188A LYS 3.4 0.3 + - - -
189A LEU* 3.7 21.7 + - + +
181B ASP* 4.8 13.3 + - - -
185B LEU* 3.9 33.6 - - + +
----------------------------------------------------------
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Residues in contact with GLU 187 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183A MET* 3.1 27.4 + - + +
184A ARG* 3.2 23.6 - - + +
185A LEU 3.2 0.2 - - - -
186A ARG* 1.3 79.2 - - - +
188A LYS* 1.3 61.5 + - + +
189A LEU 5.1 0.2 - - - -
----------------------------------------------------------
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Residues in contact with LYS 188 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
184A ARG* 3.5 33.3 + - + +
185A LEU* 3.5 19.3 + - + +
186A ARG 3.3 0.4 - - - -
187A GLU* 1.3 80.8 - - + +
189A LEU* 1.3 63.3 + - + +
189B LEU* 5.5 14.8 - - + -
----------------------------------------------------------
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Residues in contact with LEU 189 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185A LEU* 3.5 29.4 + - + +
186A ARG* 3.7 18.1 + - + -
187A GLU 3.6 1.0 - - - -
188A LYS* 1.3 82.8 - - + +
185B LEU* 3.5 34.5 - - + +
188B LYS* 4.1 35.9 - - + +
189B LEU* 4.4 12.1 - - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il