Contacts of the helix formed by residues 99 - 187 (chain B) in PDB entry 3S4R
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 99 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B ARG* 1.3 60.5 + - - +
101B THR* 3.0 33.0 + - - +
102B ASN* 3.0 34.6 + - - +
103B GLU* 4.3 0.9 + - - +
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Residues in contact with ARG 100 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B THR* 1.3 74.3 - - - +
101B THR* 1.3 63.7 + - + +
102B ASN 3.4 0.7 - - - -
103B GLU* 3.5 17.9 - - + +
104B LYS* 3.3 39.2 + - + +
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Residues in contact with THR 101 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B THR* 3.0 23.9 + - - +
100B ARG* 1.3 81.1 - - + +
102B ASN* 1.3 77.2 + - - +
104B LYS* 3.4 22.3 + - - +
105B VAL* 3.1 23.7 + - - +
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Residues in contact with ASN 102 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B THR* 3.0 32.6 + - - +
101B THR* 1.3 84.9 + - - +
103B GLU* 1.3 68.1 + - - +
105B VAL* 2.8 21.2 + - - +
106B GLU* 3.0 20.2 + - + +
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Residues in contact with GLU 103 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
99B THR 4.3 1.0 + - - +
100B ARG* 3.5 25.0 + - + +
102B ASN* 1.3 78.4 - - - +
104B LYS* 1.3 66.2 + - + +
106B GLU* 3.3 4.4 + - - -
107B LEU* 2.9 57.1 + - + +
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Residues in contact with LYS 104 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B ARG* 3.3 30.9 + - + +
101B THR* 3.6 21.3 - - + +
102B ASN 3.2 0.6 - - - -
103B GLU* 1.3 79.6 - - + +
105B VAL* 1.3 62.0 + - - +
107B LEU* 3.9 8.4 - - + +
108B GLN* 3.2 24.3 + - - +
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Residues in contact with VAL 105 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101B THR 3.1 14.1 + - - +
102B ASN* 2.8 16.4 + - - +
104B LYS* 1.3 68.2 - - + +
106B GLU* 1.3 79.8 + - + +
108B GLN* 3.0 18.7 + - - +
109B GLU* 3.0 31.3 + - + +
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Residues in contact with GLU 106 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
102B ASN* 3.0 19.7 + - + +
103B GLU* 3.9 6.7 - - - +
105B VAL* 1.3 87.2 - - + +
107B LEU* 1.3 53.0 + - + +
109B GLU* 3.1 19.6 + - - +
110B LEU* 2.8 39.0 + - - +
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Residues in contact with LEU 107 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103B GLU* 2.9 51.0 + - + +
104B LYS* 3.9 8.1 - - + +
106B GLU* 1.3 76.6 - - + +
108B GLN* 1.3 55.7 + - - +
110B LEU* 3.7 13.4 - - + +
111B ASN* 2.9 47.0 + - - +
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Residues in contact with GLN 108 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104B LYS 3.2 12.2 + - - +
105B VAL* 3.0 11.6 + - - +
107B LEU* 1.3 75.7 - - - +
109B GLU* 1.3 67.9 + - + +
111B ASN* 4.0 6.8 - - - +
112B ASP* 3.1 35.5 + - - +
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Residues in contact with GLU 109 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105B VAL* 3.0 29.9 + - + +
106B GLU* 3.3 24.1 - - - +
108B GLN* 1.3 79.2 - - + +
110B LEU* 1.3 57.7 + - - +
112B ASP* 3.2 11.2 + - - +
113B ARG* 2.9 55.7 + - - +
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Residues in contact with LEU 110 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
106B GLU 2.8 18.7 + - - +
107B LEU* 3.7 15.7 - - + +
109B GLU* 1.3 75.1 - - - +
111B ASN* 1.3 62.0 + - - +
113B ARG* 3.0 18.5 + - + +
114B PHE* 2.9 61.4 + - + -
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Residues in contact with ASN 111 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107B LEU* 2.9 36.6 + - - +
108B GLN* 4.1 5.9 - - - +
110B LEU* 1.3 77.7 - - - +
112B ASP* 1.3 60.4 + - - +
114B PHE* 3.3 23.6 + - + +
115B ALA* 2.9 29.9 + - - +
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Residues in contact with ASP 112 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108B GLN* 3.1 29.1 + - - +
109B GLU* 3.4 10.5 - - - +
111B ASN* 1.3 78.3 - - - +
113B ARG* 1.3 61.0 + - + +
115B ALA* 3.5 7.5 + - - +
116B ASN* 3.0 24.1 + - - +
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Residues in contact with ARG 113 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109B GLU* 2.9 45.6 + - - +
110B LEU* 3.0 23.2 + - + +
112B ASP* 1.3 74.8 - - + +
114B PHE* 1.3 66.7 + - + +
116B ASN* 3.2 7.8 + - + +
117B LEU* 2.9 31.3 + - + +
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Residues in contact with PHE 114 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
110B LEU* 2.9 51.3 + - + -
111B ASN* 3.5 24.2 - - - +
113B ARG* 1.3 76.7 - - + +
115B ALA* 1.3 56.2 + - - +
117B LEU* 3.2 16.8 + - + +
118B ILE* 2.8 46.7 + - + +
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Residues in contact with ALA 115 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
111B ASN 2.9 17.5 + - - +
112B ASP* 3.5 11.4 - - - +
113B ARG 3.2 0.2 - - - -
114B PHE* 1.3 76.8 - - - +
116B ASN* 1.3 58.0 + - - +
118B ILE* 3.4 12.7 - - - +
119B ASP* 3.1 32.6 + - - +
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Residues in contact with ASN 116 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112B ASP 3.0 15.3 + - - +
113B ARG* 3.2 13.0 - - + +
115B ALA* 1.3 73.4 - - - +
117B LEU* 1.3 70.3 + - - +
119B ASP* 3.0 10.9 + - - +
120B LYS* 3.0 52.7 + - - +
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Residues in contact with LEU 117 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113B ARG* 2.9 24.8 + - + +
114B PHE* 3.6 20.4 - - + +
116B ASN* 1.3 74.5 + - - +
118B ILE* 1.3 65.5 + - + +
120B LYS* 2.9 18.4 + - + +
121B VAL* 2.7 33.7 + - + +
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Residues in contact with ILE 118 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
114B PHE* 2.8 32.8 + - + +
115B ALA* 3.4 12.1 - - - +
117B LEU* 1.3 70.7 - - + +
119B ASP* 1.3 70.0 + - - +
121B VAL* 3.3 6.6 + - - +
122B ARG* 3.1 56.6 + - - +
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Residues in contact with ASP 119 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
115B ALA 3.1 13.5 + - - +
116B ASN* 3.0 11.6 + - - +
118B ILE* 1.3 86.4 - - - +
120B LYS* 1.3 63.9 + - + +
122B ARG* 3.1 24.3 + - - +
123B PHE* 3.2 11.2 + - - +
----------------------------------------------------------
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Residues in contact with LYS 120 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116B ASN* 3.0 41.8 + - - +
117B LEU* 2.9 23.8 + - + +
119B ASP* 1.3 72.2 - - + +
121B VAL* 1.3 57.5 + - + +
123B PHE* 3.0 11.0 + - - +
124B LEU* 2.8 31.8 + - + +
----------------------------------------------------------
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Residues in contact with VAL 121 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
117B LEU* 2.7 29.8 + - + +
118B ILE* 3.9 5.6 - - - +
120B LYS* 1.3 73.4 - - + +
122B ARG* 1.3 62.9 + - + +
124B LEU* 3.3 33.4 - - + +
125B GLU* 3.3 19.2 + - + +
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Residues in contact with ARG 122 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
118B ILE* 3.1 41.4 + - - +
119B ASP* 3.1 19.2 + - - +
121B VAL* 1.3 76.2 - - + +
123B PHE* 1.3 61.4 + - - +
125B GLU* 3.5 23.2 - - - +
126B GLN* 3.5 26.5 + - - +
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Residues in contact with PHE 123 (chain B).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119B ASP 3.2 9.8 + - - +
120B LYS* 3.0 14.5 + - - +
122B ARG* 1.3 75.9 - - - +
124B LEU* 1.3 64.1 + - + +
125B GLU 2.8 5.8 + - - -
126B GLN* 2.9 34.5 + - + +
127B GLN* 2.8 55.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU 124 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120B LYS* 2.8 15.3 + - + +
121B VAL* 3.3 34.5 - - + +
123B PHE* 1.3 77.5 - - + +
125B GLU* 1.3 56.0 + - - +
127B GLN* 3.8 19.4 - - + +
128B ASN* 3.0 41.7 + - - +
----------------------------------------------------------
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Residues in contact with GLU 125 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121B VAL* 3.3 17.2 + - + +
122B ARG* 3.5 29.1 - - - +
123B PHE 2.8 1.8 + - - -
124B LEU* 1.3 78.5 - - + +
126B GLN* 1.3 63.8 + - - +
127B GLN 3.2 0.2 - - - -
128B ASN* 3.3 9.0 + - - +
129B LYS* 3.0 29.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 126 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
122B ARG* 3.5 17.1 + - - +
123B PHE* 2.9 34.6 + - + +
125B GLU* 1.3 75.7 - - - +
127B GLN* 1.3 65.1 + - + +
129B LYS* 3.3 10.8 + - - +
130B ILE* 3.1 35.8 + - + +
----------------------------------------------------------
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Residues in contact with GLN 127 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123B PHE* 2.8 47.4 + - + +
124B LEU* 3.8 24.5 - - + +
126B GLN* 1.3 79.7 - - + +
128B ASN* 1.3 64.4 + - - +
130B ILE* 3.3 10.2 + - + +
131B LEU* 2.9 28.2 + - + +
----------------------------------------------------------
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Residues in contact with ASN 128 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
124B LEU* 3.0 35.6 + - - +
125B GLU* 3.3 11.3 + - + +
127B GLN* 1.3 76.9 - - - +
129B LYS* 1.3 57.9 + - - +
131B LEU* 3.1 19.8 - - - +
132B LEU* 2.9 37.9 + - + +
----------------------------------------------------------
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Residues in contact with LYS 129 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
125B GLU* 3.0 16.0 + - + +
126B GLN* 3.4 14.1 - - - +
127B GLN 3.2 0.2 - - - -
128B ASN* 1.3 75.4 - - - +
130B ILE* 1.3 66.0 + - + +
132B LEU* 3.2 15.4 + - + +
133B ALA* 3.1 19.4 + - - +
----------------------------------------------------------
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Residues in contact with ILE 130 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
126B GLN* 3.1 26.4 + - + +
127B GLN* 3.7 9.4 - - + +
129B LYS* 1.3 77.5 - - + +
131B LEU* 1.3 66.9 + - + +
133B ALA* 2.8 19.7 + - + +
134B GLU* 3.0 26.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 131 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
127B GLN* 2.9 15.3 + - + +
128B ASN* 3.1 27.1 - - - +
130B ILE* 1.3 77.7 - - + +
132B LEU* 1.3 57.1 + - + +
134B GLU* 3.5 11.1 - - + +
135B LEU* 2.9 44.0 + - + +
----------------------------------------------------------
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Residues in contact with LEU 132 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
128B ASN* 2.9 23.6 + - + +
129B LYS* 3.3 13.7 - - + +
130B ILE 3.1 0.2 - - - -
131B LEU* 1.3 77.8 - - + +
133B ALA* 1.3 58.2 + - - +
135B LEU* 3.8 17.1 - - + +
136B GLU* 2.9 46.3 + - + +
----------------------------------------------------------
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Residues in contact with ALA 133 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
129B LYS 3.1 11.2 + - - +
130B ILE* 2.8 16.3 + - + +
132B LEU* 1.3 75.7 - - - +
134B GLU* 1.3 65.1 + - + +
136B GLU* 3.0 10.4 + - - +
137B GLN* 2.9 28.1 + - + +
----------------------------------------------------------
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Residues in contact with GLU 134 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
130B ILE* 3.0 27.2 + - + +
131B LEU* 3.5 13.9 - - + +
133B ALA* 1.3 73.3 - - + +
135B LEU* 1.3 60.6 + - + +
137B GLN* 3.1 11.0 + - - +
138B LEU* 2.8 44.8 + - + +
----------------------------------------------------------
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Residues in contact with LEU 135 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
131B LEU* 2.9 35.6 + - + +
132B LEU* 3.8 19.3 - - + +
133B ALA 3.3 0.2 - - - -
134B GLU* 1.3 73.6 - - + +
136B GLU* 1.3 59.3 + - + +
138B LEU* 3.4 9.9 + - + +
139B LYS* 2.9 29.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 136 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
132B LEU* 2.9 36.1 + - + +
133B ALA* 3.0 9.8 + - - +
135B LEU* 1.3 76.9 - - - +
137B GLN* 1.3 59.4 + - + +
139B LYS* 3.3 17.8 + - - +
140B GLY* 3.0 26.7 + - - -
----------------------------------------------------------
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Residues in contact with GLN 137 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
133B ALA* 2.9 18.8 + - + +
134B GLU* 3.3 13.2 - - - +
136B GLU* 1.3 76.4 - - - +
138B LEU* 1.3 66.6 + - + +
140B GLY* 3.4 1.8 + - - -
141B GLN* 3.2 33.0 + - - +
----------------------------------------------------------
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Residues in contact with LEU 138 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134B GLU* 2.8 43.4 + - + +
135B LEU* 4.0 11.0 - - + +
137B GLN* 1.3 75.8 - - + +
139B LYS* 1.3 65.9 + - - +
141B GLN* 3.5 24.8 + - - +
142B GLY* 3.1 18.9 + - - -
----------------------------------------------------------
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Residues in contact with LYS 139 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A LYS* 5.9 2.6 - - - +
135B LEU 2.9 18.4 + - - +
136B GLU* 3.6 18.6 + - - +
138B LEU* 1.3 75.4 - - - +
140B GLY* 1.3 54.3 + - - +
142B GLY* 3.2 3.3 + - - -
143B LYS* 2.8 74.9 + - + +
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Residues in contact with GLY 140 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136B GLU 3.0 15.1 + - - -
137B GLN 3.9 2.0 - - - -
138B LEU 3.3 0.2 - - - -
139B LYS* 1.3 77.1 - - - +
141B GLN* 1.3 55.0 + - - +
143B LYS* 3.8 7.3 - - - +
144B SER* 2.9 28.9 + - - -
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Residues in contact with GLN 141 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
137B GLN* 3.2 21.1 + - - +
138B LEU* 3.5 28.5 - - - +
140B GLY* 1.3 73.1 - - - +
142B GLY* 1.3 67.0 + - - +
144B SER* 3.2 7.8 - - - -
145B ARG* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with GLY 142 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138B LEU 3.1 11.7 + - - -
139B LYS* 3.6 3.1 - - - -
141B GLN* 1.3 78.6 - - - +
143B LYS* 1.3 57.8 + - - +
145B ARG* 3.8 4.1 - - - +
146B LEU* 3.0 31.0 + - - +
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Residues in contact with LYS 143 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143A LYS* 5.8 5.2 - - - +
139B LYS* 2.8 61.5 + - + +
140B GLY* 4.0 6.1 - - - +
142B GLY* 1.3 74.8 - - - +
144B SER* 1.3 59.8 - - - +
146B LEU* 3.9 9.2 - - + +
147B GLY* 2.9 25.1 + - - -
----------------------------------------------------------
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Residues in contact with SER 144 (chain B).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
140B GLY 2.9 19.5 + - - -
141B GLN* 3.1 10.7 + - - -
143B LYS* 1.3 76.7 - - - +
145B ARG* 1.3 57.7 + - - +
147B GLY* 3.1 5.5 + - - -
148B ASP* 2.9 34.7 + - - +
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Residues in contact with ARG 145 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141B GLN 2.9 12.3 + - - +
142B GLY* 3.8 4.5 - - - +
144B SER* 1.3 76.5 + - - +
146B LEU* 1.3 60.3 + - - +
147B GLY 3.0 0.7 - - - -
148B ASP* 2.5 49.1 + - - +
149B LEU* 3.0 41.3 + - + +
152B GLU* 5.7 0.2 + - - -
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Residues in contact with LEU 146 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142B GLY 3.0 17.1 + - - +
143B LYS* 3.9 9.4 - - + +
145B ARG* 1.3 78.9 - - - +
147B GLY* 1.3 61.2 + - - +
149B LEU* 3.2 21.4 + - + -
150B TYR* 3.0 67.8 + - + +
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Residues in contact with GLY 147 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
143B LYS 2.9 17.5 + - - -
144B SER 3.4 6.7 - - - -
145B ARG 3.0 0.4 - - - -
146B LEU* 1.3 75.8 - - - +
148B ASP* 1.3 61.4 + - - +
150B TYR* 4.2 8.3 - - - +
151B GLU* 3.2 24.4 + - - +
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Residues in contact with ASP 148 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
144B SER* 2.9 21.8 + - - +
145B ARG* 2.5 39.3 + - - +
147B GLY* 1.3 73.8 - - - +
149B LEU* 1.3 55.0 + - - -
151B GLU* 3.4 5.5 + - - +
152B GLU* 2.9 29.1 + - - +
155B ARG* 4.3 3.5 + - - +
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Residues in contact with LEU 149 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145B ARG* 3.0 53.1 + - + +
146B LEU* 3.2 26.0 + - + +
148B ASP* 1.3 73.9 - - - +
150B TYR* 1.3 68.4 + - + +
152B GLU* 3.5 18.2 + - - +
153B GLU* 3.1 29.9 + - - +
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Residues in contact with TYR 150 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A TYR* 3.0 60.4 + + + +
146B LEU* 3.0 61.6 + - + +
147B GLY* 4.2 7.2 - - - +
149B LEU* 1.3 75.6 - - + +
151B GLU* 1.3 63.5 + - - +
153B GLU* 3.7 8.5 - - - +
154B MET* 3.3 10.9 + - - +
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Residues in contact with GLU 151 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A TYR* 5.4 0.4 - - - -
147B GLY 3.2 18.8 + - - +
148B ASP* 3.5 7.4 - - - +
150B TYR* 1.3 77.1 - - - +
152B GLU* 1.3 54.6 + - - +
154B MET* 3.0 17.4 + - - +
155B ARG* 2.7 63.3 + - - +
158B ARG* 5.6 2.9 + - - -
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Residues in contact with GLU 152 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145B ARG* 5.7 0.2 + - - -
148B ASP 2.9 17.9 + - - +
149B LEU* 3.7 22.4 - - - +
151B GLU* 1.3 72.2 - - - +
153B GLU* 1.3 68.7 + - - +
155B ARG* 2.9 22.7 + - - +
156B GLU* 2.8 45.8 + - + +
----------------------------------------------------------
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Residues in contact with GLU 153 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A TYR* 3.2 15.2 + - - -
154A MET* 3.6 19.5 - - + +
158A ARG* 5.5 3.3 + - - -
149B LEU 3.1 16.2 + - - +
150B TYR* 3.7 14.1 - - - +
152B GLU* 1.3 80.6 - - + +
154B MET* 1.3 62.0 + - - +
156B GLU* 3.5 7.7 + - - +
157B LEU* 3.3 24.8 + - - +
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Residues in contact with MET 154 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
150A TYR* 3.4 39.7 - - + +
153A GLU* 3.5 27.8 - - + +
154A MET* 3.7 14.1 - - + -
157A LEU* 3.5 14.6 - - + -
150B TYR 3.3 7.4 + - - +
151B GLU* 3.0 21.3 + - - +
153B GLU* 1.3 75.4 - - - +
155B ARG* 1.3 66.3 + - - +
157B LEU* 3.2 4.3 + - - +
158B ARG* 3.0 65.2 + - - +
----------------------------------------------------------
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Residues in contact with ARG 155 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B ASP* 4.3 2.8 + - - +
151B GLU* 2.7 42.4 + - - +
152B GLU* 2.9 35.5 + - - +
154B MET* 1.3 72.5 - - - +
156B GLU* 1.3 64.0 + - - +
158B ARG* 3.3 13.1 + - + +
159B ARG* 3.0 48.8 + - + +
----------------------------------------------------------
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Residues in contact with GLU 156 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152B GLU* 2.8 42.8 + - + +
153B GLU* 3.7 7.4 - - - +
155B ARG* 1.3 79.9 + - - +
157B LEU* 1.3 66.9 + - + +
158B ARG 3.1 0.2 + - - -
159B ARG* 3.3 32.0 + - - +
160B GLN* 3.0 26.6 + - - +
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Residues in contact with LEU 157 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A MET* 3.9 29.8 - - + +
157A LEU* 3.9 17.3 - - + -
158A ARG* 3.8 46.0 - - + +
161A VAL* 3.9 24.7 - - + +
153B GLU 3.3 13.2 + - - +
154B MET 3.2 8.6 + - - +
156B GLU* 1.3 80.2 - - + +
158B ARG* 1.3 56.2 - - - +
160B GLN* 3.7 13.7 + - - +
161B VAL* 3.0 31.8 + - - +
----------------------------------------------------------
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Residues in contact with ARG 158 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
153A GLU* 2.5 31.4 + - - -
157A LEU* 4.1 20.8 - - + +
151B GLU* 5.6 3.3 + - - -
154B MET* 3.0 52.4 + - - +
155B ARG* 3.5 11.9 - - - +
156B GLU 3.1 0.2 - - - -
157B LEU* 1.3 75.8 - - - +
159B ARG* 1.3 66.7 + - + +
161B VAL* 3.0 8.8 + - - +
162B ASP* 3.0 31.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 159 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
155B ARG* 3.0 40.1 + - + +
156B GLU* 3.7 27.8 + - - +
158B ARG* 1.3 75.3 - - + +
160B GLN* 1.3 58.3 + - - +
162B ASP* 3.3 8.8 + - - +
163B GLN* 3.0 39.7 + - + +
----------------------------------------------------------
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Residues in contact with GLN 160 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A VAL* 3.5 32.9 - - + +
165A THR* 5.1 0.8 + - - -
156B GLU 3.0 17.5 + - - +
157B LEU* 3.7 14.9 - - - +
159B ARG* 1.3 75.3 - - - +
161B VAL* 1.3 64.6 + - - +
163B GLN* 3.4 6.3 + - + +
164B LEU* 3.0 39.4 + - + +
----------------------------------------------------------
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Residues in contact with VAL 161 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A LEU* 4.1 9.6 - - + +
160A GLN* 3.7 38.1 - - + +
161A VAL* 3.7 23.6 - - + +
164A LEU* 3.8 13.1 - - + +
157B LEU 3.0 18.6 + - - +
158B ARG* 3.0 10.9 + - - +
160B GLN* 1.3 75.3 - - - +
162B ASP* 1.3 67.3 + - - +
164B LEU* 3.6 3.3 - - - +
165B THR* 2.8 37.3 + - - +
----------------------------------------------------------
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Residues in contact with ASP 162 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158B ARG* 3.0 22.8 + - - +
159B ARG* 3.3 9.4 + - - +
161B VAL* 1.3 82.0 - - - +
163B GLN* 1.3 74.0 + - - +
165B THR* 3.4 8.6 + - - +
166B ASN* 3.1 31.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 163 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
159B ARG* 3.0 22.8 + - + +
160B GLN* 3.7 6.5 - - - +
161B VAL 3.3 0.2 - - - -
162B ASP* 1.3 81.0 - - - +
164B LEU* 1.3 68.7 + - + +
165B THR 3.0 0.9 - - - -
166B ASN* 2.7 28.1 + - - +
167B ASP* 2.8 14.3 + - - +
170B ARG* 4.8 2.1 + - - +
----------------------------------------------------------
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Residues in contact with LEU 164 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
161A VAL* 3.7 28.5 - - + +
164A LEU* 4.1 17.4 - - + +
165A THR* 3.4 36.3 - - + +
168A LYS* 4.2 30.0 - - + +
160B GLN* 3.0 28.9 + - + +
161B VAL* 3.6 5.4 - - - +
163B GLN* 1.3 77.9 - - - +
165B THR* 1.3 58.0 + - - +
167B ASP* 3.5 5.4 - - + +
168B LYS* 2.9 32.9 + - - +
----------------------------------------------------------
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Residues in contact with THR 165 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164A LEU* 3.4 28.4 - - + +
161B VAL* 2.8 28.5 + - - +
162B ASP* 3.5 9.6 - - - +
163B GLN 2.9 0.4 + - - -
164B LEU* 1.3 77.8 - - - +
166B ASN* 1.3 61.7 + - - +
168B LYS* 4.1 3.8 + - - +
169B ALA* 3.2 24.1 + - + +
----------------------------------------------------------
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Residues in contact with ASN 166 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162B ASP* 3.1 22.8 + - - +
163B GLN* 2.7 25.9 + - - +
165B THR* 1.3 77.0 - - - +
167B ASP* 1.3 58.5 + - - +
169B ALA* 3.1 8.7 + - - +
170B ARG* 2.9 48.7 + - - +
----------------------------------------------------------
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Residues in contact with ASP 167 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168A LYS* 2.8 38.1 + - + +
172A GLU* 4.8 0.5 - - - +
163B GLN 2.8 12.0 + - - +
164B LEU* 3.5 11.3 - - - +
166B ASN* 1.3 71.8 - - - +
168B LYS* 1.3 66.0 + - - +
170B ARG* 2.9 40.3 + - - +
171B VAL* 3.0 22.5 + - - +
----------------------------------------------------------
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Residues in contact with LYS 168 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
164A LEU* 4.1 22.9 - - + +
167A ASP* 2.6 46.8 + - + +
168A LYS* 4.0 22.5 - - + +
170A ARG* 5.6 1.5 - - - +
171A VAL* 4.2 13.7 - - + -
164B LEU 2.9 17.5 + - - +
165B THR 4.1 4.0 - - - +
167B ASP* 1.3 75.0 - - - +
169B ALA* 1.3 58.2 + - - +
171B VAL* 3.5 3.6 + - - +
172B GLU* 2.9 55.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 169 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
165B THR* 3.2 20.0 + - + +
166B ASN* 3.1 12.9 + - - +
167B ASP 3.1 1.2 - - - -
168B LYS* 1.3 77.5 - - - +
170B ARG* 1.3 56.9 + - - +
172B GLU* 3.5 10.7 + - - +
173B VAL* 3.1 32.6 + - - +
----------------------------------------------------------
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Residues in contact with ARG 170 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163B GLN* 4.8 1.6 + - - +
166B ASN* 2.9 29.2 + - - +
167B ASP* 2.9 46.3 + - - +
169B ALA* 1.3 72.0 - - - +
171B VAL* 1.3 66.5 + - + +
172B GLU 3.1 1.8 - - - -
173B VAL* 3.1 11.1 + - - +
174B GLU* 3.1 23.1 + - - +
----------------------------------------------------------
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Residues in contact with VAL 171 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
168A LYS* 5.0 1.3 - - + -
171A VAL* 3.7 14.4 - - + +
172A GLU* 3.6 58.6 - - + +
175A ARG* 3.9 13.3 - - - +
167B ASP* 3.0 26.1 + - - +
168B LYS* 4.0 4.3 - - - +
170B ARG* 1.3 76.7 - - + +
172B GLU* 1.3 57.8 + - - +
174B GLU* 3.6 11.0 + - - +
175B ARG* 3.0 24.9 + - - +
----------------------------------------------------------
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Residues in contact with GLU 172 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
171A VAL* 3.4 24.5 - - + +
168B LYS* 2.9 49.9 + - - +
169B ALA* 3.8 9.4 - - - +
170B ARG 3.1 0.2 - - - -
171B VAL* 1.3 72.9 - - - +
173B VAL* 1.3 57.1 + - - +
174B GLU 3.0 1.6 - - - -
175B ARG* 3.4 27.8 + - - +
176B ASP* 2.7 43.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 173 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
169B ALA 3.1 19.4 + - - +
170B ARG* 3.1 12.2 + - - +
172B GLU* 1.3 74.7 - - - +
174B GLU* 1.3 58.3 + - + +
176B ASP* 4.0 4.7 - - - +
177B ASN* 3.0 43.4 + - - +
----------------------------------------------------------
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Residues in contact with GLU 174 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175A ARG* 3.2 37.5 + - + +
170B ARG 3.1 10.8 + - - +
171B VAL* 3.6 15.2 - - - +
172B GLU 3.0 0.6 - - - -
173B VAL* 1.3 76.5 - - + +
175B ARG* 1.3 65.5 + - - +
177B ASN* 3.0 19.0 + - - +
178B LEU* 3.1 22.4 + - + +
----------------------------------------------------------
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Residues in contact with ARG 175 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
170A ARG* 5.8 2.4 - - - +
171A VAL* 3.9 18.8 - - + +
174A GLU* 2.9 33.4 + - - +
175A ARG* 3.9 27.1 - - + +
178A LEU* 3.6 20.8 - - + +
171B VAL 3.0 18.4 + - - +
172B GLU* 3.4 32.7 + - - +
174B GLU* 1.3 75.3 - - - +
176B ASP* 1.3 91.5 + - - +
178B LEU* 3.1 8.2 + - - +
179B ALA* 3.1 22.6 + - + +
----------------------------------------------------------
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Residues in contact with ASP 176 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
172B GLU* 2.7 27.1 + - - +
173B VAL* 4.2 4.9 - - - +
175B ARG* 1.3 114.7 + - - +
177B ASN* 1.3 65.9 + - - +
179B ALA* 3.3 18.2 + - + +
180B GLU* 3.5 14.2 + - - +
----------------------------------------------------------
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Residues in contact with ASN 177 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
173B VAL* 3.0 35.1 + - - +
174B GLU* 3.0 14.7 + - - +
176B ASP* 1.3 81.2 - - - +
178B LEU* 1.3 57.9 + - + +
180B GLU* 2.7 42.6 - - - +
181B ASP* 3.1 9.9 - - - +
----------------------------------------------------------
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Residues in contact with LEU 178 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
175A ARG* 3.4 39.5 - - + +
178A LEU* 3.7 14.0 - - + +
179A ALA* 3.7 20.2 - - + +
182A ILE* 3.4 16.5 - - + +
174B GLU* 3.1 16.9 + - + +
175B ARG* 3.1 8.7 + - - +
177B ASN* 1.3 77.6 - - + +
179B ALA* 1.3 61.9 + - - +
180B GLU 3.2 2.2 - - - -
181B ASP* 3.3 18.8 + - - +
182B ILE* 3.1 22.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 179 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A LEU* 4.3 11.2 - - + -
175B ARG* 3.1 12.8 + - + +
176B ASP* 3.3 15.6 + - - +
178B LEU* 1.3 77.5 - - - +
180B GLU* 1.3 57.6 + - - +
182B ILE* 3.5 12.3 - - + +
183B MET* 3.2 37.3 + - + +
----------------------------------------------------------
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Residues in contact with GLU 180 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
176B ASP 3.5 6.6 + - - +
177B ASN* 2.7 46.5 - - - +
179B ALA* 1.3 76.2 - - - +
181B ASP* 1.3 71.6 + - - +
183B MET* 3.7 9.5 - - - +
184B ARG* 3.0 60.5 + - - +
----------------------------------------------------------
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Residues in contact with ASP 181 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A ILE* 3.3 21.9 - - + +
186A ARG* 4.8 15.6 + - - +
177B ASN 3.1 16.5 - - - +
178B LEU* 3.3 17.0 + - - +
180B GLU* 1.3 92.6 - - - +
182B ILE* 1.3 60.9 + - - +
184B ARG* 3.2 14.7 + - - +
185B LEU* 2.9 33.8 + - + +
----------------------------------------------------------
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Residues in contact with ILE 182 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A LEU* 3.9 25.8 - - + +
181A ASP* 4.5 7.0 - - + -
182A ILE* 3.1 40.4 - - + +
185A LEU* 4.5 7.4 - - + -
178B LEU 3.1 9.6 + - - +
179B ALA* 3.5 14.4 - - + +
181B ASP* 1.3 75.8 - - - +
183B MET* 1.3 81.9 - - + +
185B LEU* 3.8 5.6 - - - +
186B ARG* 2.8 67.5 + - - +
----------------------------------------------------------
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Residues in contact with MET 183 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
179B ALA* 3.2 25.9 + - + +
180B GLU* 3.7 8.7 - - - +
181B ASP 3.2 0.8 - - - -
182B ILE* 1.3 91.1 - - + +
184B ARG* 1.3 62.4 + - + +
186B ARG* 4.0 3.8 + - - +
187B GLU* 3.2 29.3 + - - +
----------------------------------------------------------
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Residues in contact with ARG 184 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180B GLU* 3.0 52.8 + - - +
181B ASP* 3.6 17.3 + - - +
183B MET* 1.3 74.8 - - + +
185B LEU* 1.3 65.6 + - + +
187B GLU* 2.9 26.8 + - - +
188B LYS* 3.4 21.2 + - - +
----------------------------------------------------------
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Residues in contact with LEU 185 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A ILE* 4.1 19.1 - - + +
185A LEU* 3.7 25.1 - - + +
186A ARG* 3.9 51.1 - - + +
189A LEU* 3.5 27.4 - - + +
181B ASP* 2.9 25.1 + - - +
184B ARG* 1.3 75.3 - - + +
186B ARG* 1.3 62.6 + - - +
188B LYS* 3.1 38.9 + - + +
189B LEU* 3.6 2.4 + - - +
----------------------------------------------------------
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Residues in contact with ARG 186 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A LEU* 5.8 0.8 - - - +
181A ASP* 4.5 23.6 + - - +
185A LEU* 3.8 18.5 - - + +
182B ILE* 2.8 61.0 + - - +
183B MET* 4.3 4.7 - - - +
185B LEU* 1.3 76.2 - - - +
187B GLU* 1.3 60.1 + - + +
188B LYS 3.2 1.1 + - - -
189B LEU* 3.4 28.4 + - + +
----------------------------------------------------------
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Residues in contact with GLU 187 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
183B MET* 3.2 21.5 + - + +
184B ARG* 2.9 13.4 + - - +
186B ARG* 1.3 77.3 - - + +
188B LYS* 1.3 59.8 + - - +
189B LEU 3.4 2.8 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il