Contacts of the helix formed by residues 591 - 615 (chain C) in PDB entry 3T6A
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLY 591 (chain C).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
585C LEU* 3.3 36.6 + - - +
586C ILE* 4.4 0.4 - - - +
588C LEU 3.0 8.3 + - - -
589C PRO 2.9 1.4 + - - -
590C HIS* 1.3 75.5 - - - +
592C HIS* 1.3 63.1 + - - +
593C GLN 3.3 2.2 - - - -
594C LEU* 3.3 7.0 + - - +
595C ARG* 2.9 34.8 + - - +
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Residues in contact with HIS 592 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
511C THR* 3.4 28.3 + - + -
589C PRO 3.1 14.1 + - - +
590C HIS* 3.1 4.0 - - - +
591C GLY* 1.3 78.7 - - - +
593C GLN* 1.3 65.4 + - - +
595C ARG* 3.3 12.0 + - - +
596C LEU* 3.0 46.9 + - + +
718C GLU* 2.7 38.0 + - - -
735D GLN* 3.9 13.2 + - - +
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Residues in contact with GLN 593 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
511C THR* 2.9 35.4 + - - +
512C VAL 3.2 3.2 + - - +
513C SER 3.2 5.8 + - - -
514C SER* 3.0 39.3 + - - -
565C ARG* 6.1 3.4 - - - +
590C HIS 4.5 5.2 + - - +
591C GLY 3.3 0.6 - - - -
592C HIS* 1.3 78.5 - - + +
594C LEU* 1.3 64.3 + - - +
596C LEU* 3.1 6.0 + - - -
597C ASP* 2.9 36.4 + - - +
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Residues in contact with LEU 594 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563C VAL* 3.6 23.1 - - + +
564C ALA* 4.4 6.1 - - - +
565C ARG* 4.4 23.3 - - - +
582C GLY* 3.8 25.8 - - - +
585C LEU* 4.3 16.2 - - + -
586C ILE* 3.4 24.2 - - + -
591C GLY 3.3 10.0 + - - +
593C GLN* 1.3 79.3 - - - +
595C ARG* 1.3 57.2 + - - +
597C ASP* 3.0 16.9 + - + +
598C ILE* 2.9 43.2 + - + +
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Residues in contact with ARG 595 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
586C ILE* 2.5 47.0 + - + +
588C LEU 2.7 18.2 + - - -
589C PRO 3.2 23.4 + - - -
591C GLY 2.9 24.1 + - - +
592C HIS* 3.3 9.3 - - - +
594C LEU* 1.3 71.5 - - - +
596C LEU* 1.3 63.3 + - - +
598C ILE* 3.3 5.9 + - - +
599C ILE* 3.0 29.4 + - - +
714C VAL* 3.5 32.8 - - + +
717C MET* 3.5 34.1 - - - +
718C GLU* 2.5 36.6 + - + +
735D GLN* 3.7 19.4 + - - +
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Residues in contact with LEU 596 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
511C THR* 3.4 56.5 - - + +
512C VAL* 4.0 13.0 - - - +
513C SER* 4.3 2.8 + - - +
592C HIS* 3.0 24.8 + - + +
593C GLN* 3.6 5.8 - - - +
595C ARG* 1.3 76.8 - - - +
597C ASP* 1.3 58.0 + - - +
599C ILE* 3.4 11.7 + - + +
600C GLU* 3.0 28.2 + - - +
718C GLU* 3.9 29.2 - - + +
720C GLN 6.2 0.7 - - - -
721C ALA* 5.5 6.7 - - - +
797C GLN* 5.2 1.9 + - - -
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Residues in contact with ASP 597 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
513C SER* 3.4 4.9 - - - -
514C SER* 2.8 51.1 + - - -
515C PHE* 3.4 27.4 + - + -
563C VAL* 4.9 5.6 - - + -
565C ARG* 5.5 3.8 + - - -
593C GLN* 2.9 26.1 + - - +
594C LEU* 3.0 19.3 + - + +
596C LEU* 1.3 76.1 - - - +
598C ILE* 1.3 58.7 + - - +
600C GLU* 3.3 2.2 + - - -
601C ARG* 3.0 28.2 + - - +
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Residues in contact with ILE 598 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563C VAL* 4.9 9.9 - - + -
564C ALA* 5.1 9.4 - - + -
586C ILE* 4.0 24.0 - - + -
594C LEU* 2.9 39.1 + - + +
595C ARG* 3.6 8.1 - - - +
597C ASP* 1.3 76.2 - - - +
599C ILE* 1.3 62.3 + - - +
601C ARG* 4.7 0.7 - - - -
602C HIS* 3.2 10.9 + - - +
645C TYR* 2.8 48.0 + - + +
710C LEU* 4.4 23.1 - - + -
711C MET* 4.3 9.0 - - - -
714C VAL* 4.5 13.9 - - + -
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Residues in contact with ILE 599 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
595C ARG 3.0 19.0 + - - +
596C LEU* 3.6 11.2 - - + +
597C ASP 3.2 0.2 - - - -
598C ILE* 1.3 75.1 - - - +
600C GLU* 1.3 67.8 + - - +
602C HIS* 3.2 2.9 + - - +
603C ASN* 3.1 27.6 + - - +
711C MET* 4.1 19.2 - - + +
714C VAL* 3.2 36.8 - - + +
715C THR* 4.5 2.9 - - - +
718C GLU* 4.4 6.5 - - + -
721C ALA* 3.8 25.8 - - + -
722C VAL 3.6 24.9 - - - +
723C THR* 4.6 8.5 - - + -
797C GLN* 4.9 4.9 - - - +
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Residues in contact with GLU 600 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
512C VAL* 5.5 0.5 - - - +
513C SER* 3.2 25.6 + - - +
515C PHE* 3.9 15.9 - - + -
596C LEU 3.0 12.8 + - - +
597C ASP 3.3 4.5 + - - +
599C ILE* 1.3 77.3 - - - +
601C ARG* 1.3 57.0 + - - +
603C ASN* 3.3 0.7 + - - +
604C THR* 2.8 53.3 + - - +
780C THR* 4.6 0.7 - - + -
784C MET* 4.0 11.3 - - - +
797C GLN* 2.5 30.8 + - - +
800C ARG* 3.0 30.8 + - - -
801C TYR* 2.7 19.7 + - - -
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Residues in contact with ARG 601 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
515C PHE* 4.2 3.3 - - + -
556C VAL* 4.3 4.4 + - - +
559C MET* 3.3 32.8 - - - +
560C ASP* 2.7 30.8 + - - -
563C VAL* 4.0 26.1 - - - +
597C ASP 3.0 15.0 + - - +
598C ILE* 4.7 0.4 - - - -
600C GLU* 1.3 77.2 - - - +
602C HIS* 1.3 57.7 + - - +
604C THR* 4.1 0.7 - - - -
605C MET* 2.9 54.3 + - + +
645C TYR* 3.1 21.1 - - + +
778C CYS* 3.0 24.2 + - - +
780C THR* 2.9 43.8 + - - +
783C GLN* 4.3 2.1 + - - +
----------------------------------------------------------
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Residues in contact with HIS 602 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
598C ILE 3.2 16.7 + - - +
599C ILE 3.7 1.6 - - - +
601C ARG* 1.3 77.1 - - - +
603C ASN* 1.3 67.7 + - - +
605C MET* 3.5 4.5 + - - +
606C ALA* 3.1 21.7 + - - +
645C TYR* 3.4 29.4 + + + -
648C SER* 2.7 29.0 + - - -
649C ALA* 3.2 28.2 + - + +
652C LYS* 4.5 19.1 + - + +
711C MET* 3.3 43.1 - - + +
728C ASP* 4.9 5.8 - - - -
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Residues in contact with ASN 603 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
599C ILE* 3.1 22.6 + - - +
600C GLU 3.6 1.8 - - - +
602C HIS* 1.3 75.1 + - - +
604C THR* 1.3 65.6 + - - +
606C ALA* 3.2 6.2 + - - +
607C ILE* 3.0 28.8 + - - +
652C LYS* 3.6 10.6 + - - +
711C MET* 4.9 4.6 - - - +
722C VAL 3.1 26.5 + - - -
723C THR* 3.3 14.1 - - - +
724C PHE* 3.1 25.0 + - + +
797C GLN* 4.7 0.2 - - - +
801C TYR* 3.3 31.8 + - + +
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Residues in contact with THR 604 (chain C).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
600C GLU* 2.8 39.6 + - - +
601C ARG 4.1 2.5 - - - -
603C ASN* 1.3 72.7 - - - +
605C MET* 1.3 57.7 + - - +
607C ILE* 3.4 6.4 + - - +
608C GLY* 3.0 25.3 + - - -
780C THR* 4.4 8.1 - - + +
783C GLN* 3.6 31.4 - - + +
784C MET* 3.9 18.6 - - + +
787C LEU* 3.8 15.5 - - + +
788C TRP* 3.8 15.3 - - + -
801C TYR* 4.9 0.2 + - - -
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Residues in contact with MET 605 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
556C VAL* 4.7 9.6 - - + -
601C ARG* 2.9 60.3 + - + +
602C HIS* 3.9 3.8 - - - +
604C THR* 1.3 78.6 - - - +
606C ALA* 1.3 63.3 + - - +
608C GLY* 3.1 2.8 + - - -
609C ILE* 3.1 38.9 + - + +
645C TYR* 5.7 0.7 - - + -
646C SER* 3.2 31.4 - - - +
649C ALA* 3.9 17.0 - - + -
650C LEU* 4.7 5.6 - - + -
783C GLN* 3.7 21.1 + - - +
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Residues in contact with ALA 606 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
602C HIS 3.1 18.2 + - - +
603C ASN 3.7 3.4 - - - +
605C MET* 1.3 73.9 - - - +
607C ILE* 1.3 67.0 + - + +
608C GLY 3.2 0.2 + - - -
609C ILE* 3.3 4.4 + - - +
610C ALA* 3.1 20.4 + - - +
649C ALA* 3.6 26.0 - - - +
652C LYS* 3.8 26.2 - - + +
653C ALA* 3.7 7.0 - - - +
656C MET* 3.8 12.7 - - + +
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Residues in contact with ILE 607 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
603C ASN 3.0 21.2 + - - +
604C THR 3.7 4.0 - - - +
606C ALA* 1.3 75.4 - - - +
608C GLY* 1.3 58.1 + - - +
610C ALA* 3.3 4.4 + - - +
611C VAL* 2.9 29.3 + - + +
656C MET* 4.3 4.9 - - - -
724C PHE* 3.4 44.9 - - + -
787C LEU* 4.1 11.0 - - + -
788C TRP* 3.9 15.5 - - + -
801C TYR* 3.8 23.8 - - + -
804C PHE* 3.5 38.8 - - + -
808C LEU* 5.0 2.7 - - + -
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Residues in contact with GLY 608 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
604C THR 3.0 14.5 + - - -
605C MET* 3.1 5.1 + - - -
606C ALA 3.1 0.6 - - - -
607C ILE* 1.3 76.4 - - - +
609C ILE* 1.3 62.4 + - - +
611C VAL* 3.2 9.5 + - - +
612C ASP* 2.9 21.5 + - - +
783C GLN* 6.0 2.7 - - - -
787C LEU* 4.4 13.5 - - - -
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Residues in contact with ILE 609 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
544C PHE* 6.2 4.3 - - + -
605C MET* 3.1 23.5 + - + +
606C ALA* 3.7 2.0 - - - +
608C GLY* 1.3 74.0 - - - +
610C ALA* 1.3 58.0 + - - +
612C ASP* 2.8 25.4 + - + +
613C ILE* 3.2 13.5 + - + +
630C ILE* 3.7 39.3 - - + -
650C LEU* 3.8 32.5 - - + -
653C ALA* 3.6 24.0 - - + -
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Residues in contact with ALA 610 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
606C ALA 3.1 6.0 + - - +
607C ILE 3.6 7.6 - - - +
609C ILE* 1.3 77.7 - - - +
611C VAL* 1.3 58.7 + - - +
613C ILE* 3.2 3.8 + - - +
614C LEU* 2.9 32.9 + - - +
653C ALA* 4.0 5.3 - - + +
656C MET* 3.5 31.6 - - - -
659C ILE* 3.9 20.6 - - + -
808C LEU* 4.0 15.3 - - + -
----------------------------------------------------------
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Residues in contact with VAL 611 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
532C LEU* 4.5 10.5 - - + -
537C LEU* 4.5 24.0 - - + -
607C ILE 2.9 17.4 + - - +
608C GLY 3.2 9.8 + - - +
610C ALA* 1.3 75.6 - - - +
612C ASP* 1.3 58.9 + - - +
614C LEU* 4.5 1.6 - - - +
615C GLY* 2.9 31.6 + - - +
616C CYS* 3.5 3.9 + - - -
787C LEU* 3.9 10.5 - - + -
804C PHE* 3.2 34.1 - - + -
808C LEU* 3.7 15.9 - - + -
811C LEU* 5.8 5.4 - - + -
----------------------------------------------------------
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Residues in contact with ASP 612 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
540C ALA* 5.9 1.0 - - - +
541C LYS* 3.3 26.7 + - - +
544C PHE* 3.9 23.3 - - + +
608C GLY 2.9 10.9 + - - +
609C ILE* 2.8 16.6 + - + +
611C VAL* 1.3 79.4 - - - +
613C ILE* 1.3 60.0 + - + +
616C CYS* 3.5 33.7 + - - +
617C THR* 4.2 1.0 + - - +
626C THR* 3.0 27.9 - - + +
630C ILE* 5.0 4.9 - - + +
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Residues in contact with ILE 613 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
609C ILE* 3.2 11.1 + - + +
610C ALA* 3.2 6.0 + - - +
612C ASP* 1.3 77.5 - - - +
614C LEU* 1.3 56.9 + - - +
617C THR* 2.7 24.8 + - - -
623C ARG* 3.5 28.8 - - + +
626C THR* 4.5 7.4 - - + -
627C LEU* 3.9 23.3 - - + -
630C ILE* 3.3 34.3 - - + -
653C ALA* 5.5 1.6 - - + -
654C LEU* 4.0 11.7 - - + -
659C ILE* 4.1 23.3 - - + -
662C LEU* 4.2 20.0 - - + -
665C THR* 5.2 3.6 - - + -
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Residues in contact with LEU 614 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
610C ALA 2.9 12.6 + - - +
611C VAL 3.8 0.4 - - - +
613C ILE* 1.3 75.5 - - - +
615C GLY* 1.3 57.2 + - - +
617C THR* 4.4 0.7 - - - -
658C GLN* 3.8 15.0 - - + +
659C ILE* 3.7 18.4 - - + -
662C LEU* 3.7 25.4 - - + -
808C LEU* 3.6 47.1 - - + +
811C LEU* 3.5 32.0 - - + +
812C SER* 3.6 29.4 - - - +
814C LYS* 6.0 0.2 - - - -
815C LEU* 3.9 20.9 - - + +
----------------------------------------------------------
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Residues in contact with GLY 615 (chain C).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
537C LEU* 6.2 2.9 - - - -
611C VAL* 2.9 17.4 + - - -
613C ILE 3.3 1.6 - - - -
614C LEU* 1.3 79.5 - - - +
616C CYS* 1.3 57.5 + - - +
617C THR* 2.9 16.7 + - - +
811C LEU* 4.6 9.9 - - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il