Contacts of the helix formed by residues 136 - 167 (chain A) in PDB entry 3UON
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with THR 136 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A VAL* 3.7 8.0 - - - +
133A VAL 4.6 6.7 - - - +
134A LYS* 3.3 14.5 + - - +
135A ARG* 1.3 79.7 - - - +
137A THR* 1.3 64.2 + - - +
138A LYS* 3.4 10.2 + - - +
139A MET* 3.3 25.3 + - + +
140A ALA* 3.2 21.7 + - - +
1065A LYS* 4.3 6.7 - - - +
1165A CL 3.7 17.0 - - + -
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Residues in contact with THR 137 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56A THR* 6.3 0.4 - - - -
57A VAL* 4.1 9.6 - - + +
60A TYR* 3.4 44.2 - - + +
136A THR* 1.3 73.7 - - - +
138A LYS* 1.3 59.2 + - - +
140A ALA* 3.5 2.8 + - - +
141A GLY* 3.0 24.6 + - - -
1065A LYS* 5.1 1.1 - - - +
1165A CL 3.4 20.2 - - + +
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Residues in contact with LYS 138 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
136A THR* 3.1 10.2 + - - +
137A THR* 1.3 79.8 + - - +
139A MET* 1.3 67.3 + - + +
140A ALA 3.2 0.2 + - - -
141A GLY* 3.3 2.3 + - - -
142A MET* 3.0 34.1 + - + +
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Residues in contact with MET 139 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
134A LYS 3.9 18.4 - - - +
135A ARG* 5.3 1.3 - - - -
136A THR* 3.3 19.9 + - - +
138A LYS* 1.3 78.7 - - + +
140A ALA* 1.3 57.7 + - - +
142A MET* 3.3 27.4 + - + +
143A MET* 2.9 54.4 + - + +
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Residues in contact with ALA 140 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57A VAL* 4.3 14.4 - - + -
60A TYR* 4.1 23.8 - - + -
61A PHE* 4.6 14.8 - - + -
136A THR 3.2 10.5 + - - +
137A THR* 3.5 10.5 - - - +
138A LYS 3.1 0.8 - - - -
139A MET* 1.3 78.2 - - - +
141A GLY* 1.3 59.7 + - - +
143A MET* 3.0 8.0 + - - +
144A ILE* 2.9 34.7 + - - +
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Residues in contact with GLY 141 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60A TYR* 5.2 1.7 - - - -
137A THR 3.0 12.3 + - - -
138A LYS 3.8 2.5 - - - -
140A ALA* 1.3 79.2 - - - +
142A MET* 1.3 56.2 + - - +
144A ILE* 3.8 12.6 - - - +
145A ALA* 2.9 28.1 + - - +
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Residues in contact with MET 142 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138A LYS* 3.0 26.7 + - + +
139A MET* 3.5 37.5 - - + +
141A GLY* 1.3 75.7 - - - +
143A MET* 1.3 65.3 + - + +
145A ALA* 3.3 7.5 + - + +
146A ALA* 2.8 29.5 + - + +
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Residues in contact with MET 143 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61A PHE* 5.1 1.8 - - + -
116A ILE* 3.4 49.8 - - + +
119A PHE* 6.2 3.4 - - + -
139A MET* 2.9 40.1 + - + +
140A ALA* 3.0 5.6 + - - +
142A MET* 1.3 77.6 - - + +
144A ILE* 1.3 60.7 + - - +
146A ALA* 3.4 9.2 + - - +
147A ALA 3.0 22.5 + - - -
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Residues in contact with ILE 144 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
60A TYR* 3.7 38.8 - - + +
61A PHE* 4.2 16.8 - - + -
64A SER* 3.7 14.8 - - - +
113A ASN* 4.6 3.4 - - - +
116A ILE* 4.7 1.8 - - + -
140A ALA 2.9 27.4 + - - +
141A GLY* 3.8 9.0 - - - +
143A MET* 1.3 73.9 - - - +
145A ALA* 1.3 65.6 + - - +
147A ALA* 3.1 7.4 + - - +
148A TRP* 3.0 52.9 + - + +
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Residues in contact with ALA 145 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141A GLY 2.9 20.0 + - - +
142A MET* 3.3 10.3 + - + +
144A ILE* 1.3 77.3 - - - +
146A ALA* 1.3 62.0 + - - +
148A TRP* 4.0 3.4 - - - +
149A VAL* 3.0 36.5 + - + +
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Residues in contact with ALA 146 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
142A MET* 2.8 21.2 + - + +
143A MET* 3.7 11.7 - - - +
145A ALA* 1.3 72.4 - - - +
147A ALA* 1.3 55.0 + - - +
149A VAL* 4.7 3.6 - - - -
150A LEU* 2.8 44.2 + - + +
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Residues in contact with ALA 147 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
109A ALA* 4.8 1.6 - - - +
112A MET* 4.1 24.5 - - + +
113A ASN* 4.4 15.3 - - - +
116A ILE* 4.0 16.4 - - + -
143A MET 3.0 14.1 + - - +
144A ILE* 3.1 11.2 + - - +
146A ALA* 1.3 76.8 - - - +
148A TRP* 1.3 55.7 + - + +
150A LEU* 3.9 0.9 - - - +
151A SER* 2.7 39.2 + - - -
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Residues in contact with TRP 148 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
64A SER* 2.8 42.1 + - - +
67A CYS* 4.1 10.3 - - + -
68A ALA* 3.8 32.5 - - + -
71A ILE* 5.1 7.2 - - + -
105A VAL* 4.9 9.8 - - + +
106A VAL* 4.1 20.4 - - + -
109A ALA* 3.9 23.8 - - + -
113A ASN* 4.6 1.0 - - - +
144A ILE* 3.0 38.6 + - + +
145A ALA* 4.0 4.7 - - - +
147A ALA* 1.3 82.0 - - + +
149A VAL* 1.3 67.0 + - + +
151A SER* 3.6 4.7 - - - -
152A PHE* 2.9 25.4 + - - +
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Residues in contact with VAL 149 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
145A ALA* 3.0 27.4 + - + +
146A ALA* 4.1 3.6 - - - +
148A TRP* 1.3 75.9 - - + +
150A LEU* 1.3 58.7 + - + +
152A PHE* 3.4 7.2 + - + +
153A ILE* 2.9 54.2 + - + +
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Residues in contact with LEU 150 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A MET* 4.4 23.3 - - + -
146A ALA* 2.8 28.8 + - + +
147A ALA 3.9 1.6 - - - +
149A VAL* 1.3 72.6 - - + +
151A SER* 1.3 65.4 + - - +
153A ILE* 3.2 20.5 + - + +
154A LEU* 3.1 35.6 + - + +
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Residues in contact with SER 151 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL* 3.6 22.9 - - - -
108A ASN* 2.6 34.4 + - - +
109A ALA* 3.3 13.8 + - - -
112A MET* 3.7 3.2 - - - -
147A ALA 2.7 22.8 + - - -
148A TRP 3.6 4.3 - - - -
150A LEU* 1.3 75.9 - - - +
152A PHE* 1.3 62.9 + - - +
154A LEU* 3.0 15.8 + - - +
155A TRP* 3.1 17.1 + - - +
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Residues in contact with PHE 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
105A VAL* 3.7 23.9 - - + +
148A TRP 2.9 16.0 + - - +
149A VAL* 3.6 6.7 - - + +
151A SER* 1.3 76.5 - - - +
153A ILE* 1.3 78.0 + - + +
154A LEU 3.1 0.3 + - - -
156A ALA* 2.9 50.6 + - + +
157A PRO* 3.2 9.8 - - + +
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Residues in contact with ILE 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149A VAL* 2.9 42.0 + - + +
150A LEU* 3.5 19.3 - - + +
152A PHE* 1.3 87.0 - - + +
154A LEU* 1.3 67.5 + - + +
157A PRO* 3.1 23.2 - - + +
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Residues in contact with LEU 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A ASN* 4.5 10.3 - - - +
112A MET* 4.4 21.1 - - + -
150A LEU* 3.1 25.5 + - + +
151A SER 3.0 8.1 + - - +
153A ILE* 1.3 84.4 - - + +
155A TRP* 1.3 71.5 + - + +
157A PRO* 4.2 1.0 - - - +
158A ALA* 3.9 15.1 + - - +
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Residues in contact with TRP 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A TYR* 3.5 38.9 + + + -
105A VAL* 3.6 17.3 - - + +
108A ASN* 3.0 35.7 + - + +
151A SER 3.1 10.8 + - - -
154A LEU* 1.3 85.5 - - + +
156A ALA* 1.3 67.6 + - - +
158A ALA* 3.2 5.5 + - + +
159A ILE* 2.9 51.4 + - + +
178A ILE* 4.6 3.1 - - + -
180A PHE* 4.7 10.3 - + - -
181A PHE* 4.1 10.5 - + - -
190A THR* 3.3 30.7 - - + -
194A ALA* 4.0 16.2 - - + -
1162A QNB 3.6 23.0 - + - -
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Residues in contact with ALA 156 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A ALA* 4.4 7.9 - - + -
105A VAL* 3.7 8.8 - - + +
152A PHE* 2.9 50.3 + - + +
155A TRP* 1.3 74.1 - - - +
157A PRO* 1.3 71.3 - - + +
160A LEU* 3.0 41.2 + - + +
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Residues in contact with PRO 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152A PHE* 3.2 11.7 - - + +
153A ILE* 3.1 32.5 - - + +
154A LEU 5.1 0.2 - - - +
155A TRP 3.6 2.0 - - - -
156A ALA* 1.3 91.9 - - + +
158A ALA* 1.3 56.9 + - - +
161A PHE* 2.9 56.7 + - + +
165A ILE* 5.3 1.1 - - - +
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Residues in contact with ALA 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
154A LEU 3.9 13.1 + - - +
155A TRP* 3.2 8.2 + - + +
157A PRO* 1.3 79.7 - - - +
159A ILE* 1.3 60.9 + - - +
162A TRP* 2.9 44.3 + - + +
165A ILE* 5.3 5.2 - - - -
180A PHE* 3.8 19.9 - - + -
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Residues in contact with ILE 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A ASP* 4.0 15.3 - - - +
100A LEU* 4.1 13.9 - - + +
101A ALA* 3.7 31.6 - - - +
104A TYR* 3.9 23.6 - - + -
155A TRP* 2.9 38.7 + - + +
156A ALA 3.8 2.5 - - - +
158A ALA* 1.3 78.9 - - - +
160A LEU* 1.3 73.1 + - + +
162A TRP* 4.3 5.0 + - - +
163A GLN* 5.4 0.7 + - - +
178A ILE* 4.1 23.3 - - + -
179A GLN* 5.8 3.3 + - - +
180A PHE* 4.2 12.7 - - + -
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Residues in contact with LEU 160 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A ASP* 3.7 25.7 - - + +
98A LEU* 4.1 21.5 - - + -
101A ALA* 3.2 33.2 - - + -
156A ALA* 3.0 23.4 + - + +
157A PRO 4.3 0.4 - - - +
159A ILE* 1.3 80.2 - - + +
161A PHE* 1.3 87.3 + - + +
162A TRP 3.5 0.2 - - - -
163A GLN* 3.1 29.0 + - - +
164A PHE* 4.1 0.9 - - - -
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Residues in contact with PHE 161 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A PRO* 2.9 36.3 + - + +
160A LEU* 1.3 97.9 - - + +
162A TRP* 1.3 66.2 + - - +
163A GLN 3.2 3.4 - - - -
164A PHE* 3.1 29.6 + + + +
165A ILE* 2.9 31.1 + - + +
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Residues in contact with TRP 162 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
158A ALA* 2.9 29.3 + - + +
159A ILE 4.3 4.9 + - - +
160A LEU 3.5 1.2 - - - -
161A PHE* 1.3 77.1 - - - +
163A GLN* 1.3 63.1 + - - +
165A ILE* 3.1 29.2 + - + +
166A VAL* 3.0 44.7 + - + +
179A GLN* 3.9 34.6 + - + +
180A PHE* 3.6 46.5 - + + +
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Residues in contact with GLN 163 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A ASP* 3.4 21.4 + - - -
159A ILE 5.4 0.6 + - - +
160A LEU 3.1 23.9 + - - +
162A TRP* 1.3 80.0 - - - +
164A PHE* 1.3 86.0 + - + +
166A VAL 3.5 0.2 + - - -
167A GLY* 2.6 31.4 + - - -
168A VAL 3.1 24.7 + - - +
169A ARG* 3.2 33.9 + - + +
179A GLN* 3.5 22.0 - - - +
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Residues in contact with PHE 164 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
160A LEU 4.1 3.6 - - - -
161A PHE* 3.1 34.5 + + + +
163A GLN* 1.3 105.0 - - + +
165A ILE* 1.3 67.8 + - + +
167A GLY* 3.3 12.7 + - - -
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Residues in contact with ILE 165 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
157A PRO 5.3 0.4 - - - +
158A ALA* 5.2 6.7 - - - +
161A PHE* 2.9 29.2 + - + +
162A TRP* 3.1 34.7 + - + +
164A PHE* 1.3 80.0 - - + +
166A VAL* 1.3 66.7 + - + +
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Residues in contact with VAL 166 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
162A TRP* 3.0 50.4 + - + +
163A GLN 4.2 2.0 - - - +
165A ILE* 1.3 80.8 - - + +
167A GLY* 1.3 58.4 + - - +
168A VAL* 3.3 26.0 + - + +
179A GLN* 5.1 1.3 - - - +
----------------------------------------------------------
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Residues in contact with GLY 167 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
163A GLN 2.6 18.0 + - - -
164A PHE* 3.3 13.8 + - - -
166A VAL* 1.3 73.5 - - - +
168A VAL* 1.3 57.2 + - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il