Contacts of the helix formed by residues 522 - 567 (chain B) in PDB entry 3WOO
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASP 522 (chain B).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
497B GLY 4.6 0.3 - - - +
498B THR* 2.8 20.6 + - - -
499B LYS* 2.6 37.6 + - + +
500B LEU* 3.9 6.1 + - - +
509B TRP* 5.1 4.3 + - + +
520B SER* 2.9 16.2 + - - +
521B ASN* 1.3 75.4 - - - +
523B PRO* 1.3 59.2 - - - +
524B ALA* 3.2 10.9 + - - +
525B ILE* 3.3 23.3 + - + +
526B GLN* 2.7 34.7 + - - +
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Residues in contact with PRO 523 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479B TRP* 4.6 4.3 + - - -
494B ARG* 3.3 45.6 - - + +
495B LEU* 3.8 10.7 - - + +
497B GLY* 3.7 8.7 - - - +
498B THR* 3.7 17.7 - - - +
521B ASN 3.2 6.2 - - - +
522B ASP* 1.3 93.0 - - - +
524B ALA* 1.3 58.0 + - - +
526B GLN* 3.6 14.7 - - - +
527B TYR* 3.0 25.6 + - - +
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Residues in contact with ALA 524 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
404B MET* 4.0 25.1 - - + +
405B LEU* 4.3 9.2 - - + -
408B ALA* 3.5 11.9 - - + +
495B LEU* 4.1 11.8 - - + +
498B THR* 3.5 26.4 + - + +
500B LEU* 4.1 3.1 - - + -
522B ASP* 3.2 2.2 + - - +
523B PRO* 1.3 76.2 - - - +
525B ILE* 1.3 66.6 + - - +
527B TYR* 3.1 7.6 + - - +
528B ALA 3.0 18.7 + - - -
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Residues in contact with ILE 525 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408B ALA* 4.0 8.7 - - + -
500B LEU* 4.4 13.2 - - + -
509B TRP* 3.2 57.4 - - + +
517B PHE* 3.3 50.7 - - + +
520B SER* 3.7 10.5 - - - +
522B ASP* 3.3 20.0 + - + +
524B ALA* 1.3 78.8 - - - +
526B GLN* 1.3 64.8 + - - +
528B ALA* 3.2 2.9 + - + +
529B VAL* 3.0 24.5 + - + +
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Residues in contact with GLN 526 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
479B TRP* 5.4 3.4 - - + +
494B ARG* 5.8 2.4 - - - +
520B SER 3.3 24.1 + - - +
521B ASN* 3.4 34.7 + - - +
522B ASP 2.7 18.4 + - - +
523B PRO* 3.6 15.7 - - - +
524B ALA 3.2 0.2 - - - -
525B ILE* 1.3 72.7 - - - +
527B TYR* 1.3 59.2 + - - +
529B VAL* 3.3 7.1 + - - +
530B ALA* 2.9 30.1 + - - +
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Residues in contact with TYR 527 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B LEU* 4.2 1.9 - - - +
399B PHE* 3.5 26.9 - + - -
400B ASN* 2.7 32.6 + - - -
405B LEU* 3.8 31.0 - - + -
409B THR* 4.4 6.3 - - + -
476B VAL* 4.1 11.4 - - + +
479B TRP* 3.6 47.9 - + + +
495B LEU* 4.8 0.2 - - + -
523B PRO 3.0 14.6 + - - +
524B ALA* 3.1 11.4 + - - +
526B GLN* 1.3 77.5 - - - +
528B ALA* 1.3 66.9 + - + +
530B ALA* 3.3 6.5 + - - +
531B VAL* 3.0 54.9 + - + +
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Residues in contact with ALA 528 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
408B ALA* 3.6 34.5 - - + +
409B THR* 3.7 12.3 - - + +
412B TYR* 4.0 12.3 - - + -
524B ALA 3.0 11.4 + - - +
525B ILE* 3.2 7.8 + - - +
527B TYR* 1.3 82.1 - - + +
529B VAL* 1.3 58.4 + - - +
531B VAL* 3.1 6.8 + - - +
532B MET* 2.8 34.1 + - - +
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Residues in contact with VAL 529 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412B TYR* 3.6 36.9 + - + +
517B PHE 3.9 24.9 - - - +
518B GLU* 4.3 14.8 - - + +
525B ILE* 3.0 24.4 + - + +
526B GLN* 3.7 7.2 - - - +
528B ALA* 1.3 75.8 - - - +
530B ALA* 1.3 63.8 + - - +
531B VAL 3.4 0.3 + - - -
532B MET* 4.3 1.2 - - - +
533B PRO* 3.7 15.9 - - - +
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Residues in contact with ALA 530 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
475B ALA* 3.9 16.8 - - + +
479B TRP* 4.9 17.3 - - + -
526B GLN 2.9 13.8 + - - +
527B TYR* 3.4 13.2 - - - +
529B VAL* 1.3 79.8 - - - +
531B VAL* 1.4 62.9 + - + +
533B PRO* 4.0 7.4 - - - +
534B THR* 5.0 0.3 + - - -
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Residues in contact with VAL 531 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B LEU* 6.0 0.7 - - + -
400B ASN* 5.0 0.7 - - - +
409B THR* 4.4 1.6 - - + -
475B ALA* 4.5 15.3 - - + +
476B VAL* 4.0 17.9 - - + -
479B TRP* 5.6 0.4 - - + -
527B TYR* 3.0 62.7 + - + +
528B ALA* 3.6 7.2 - - - +
530B ALA* 1.4 76.1 - - + +
532B MET* 1.3 69.7 + - - +
533B PRO* 3.3 4.3 - - - -
534B THR* 3.0 17.6 + - + -
535B LEU* 3.1 35.0 + - + +
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Residues in contact with MET 532 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
409B THR* 3.5 35.2 - - - +
412B TYR* 3.5 26.2 - - + -
413B ARG* 4.1 24.9 - - + -
416B ILE* 3.7 23.6 - - + -
528B ALA 2.8 17.2 + - - +
529B VAL 4.3 0.2 - - - +
531B VAL* 1.3 76.1 - - - +
533B PRO* 1.4 63.5 - - + +
535B LEU* 3.0 26.7 + - + -
536B LEU* 2.8 41.2 + - + +
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Residues in contact with PRO 533 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
412B TYR* 5.7 0.4 - - + +
529B VAL 3.7 13.5 - - - +
530B ALA 4.0 6.3 - - - +
531B VAL 3.4 4.0 - - - -
532B MET* 1.4 94.5 - - + +
534B THR* 1.3 61.5 + - - +
536B LEU* 3.5 10.9 + - + +
537B LYS* 3.0 24.3 + - - +
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Residues in contact with THR 534 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B LEU* 5.3 0.9 - - + -
473B VAL* 3.6 27.6 - - + -
475B ALA* 3.5 23.5 + - - +
531B VAL* 3.0 11.5 + - + -
533B PRO* 1.3 79.3 - - - +
535B LEU* 1.3 56.0 + - + +
537B LYS* 3.1 7.6 + - - +
538B LEU* 2.8 56.3 + - + +
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Residues in contact with LEU 535 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
396B LEU* 3.7 31.9 - - + -
400B ASN* 3.9 18.8 - - - +
409B THR* 4.2 16.8 - - + -
413B ARG* 6.0 1.8 - - - +
531B VAL* 3.5 33.4 - - + +
532B MET* 3.0 23.0 + - + +
534B THR* 1.3 78.8 - - + +
536B LEU* 1.3 57.0 + - + +
538B LEU* 3.3 6.2 + - + +
539B GLU* 2.8 30.4 + - - +
542B ARG* 4.9 1.6 + - - -
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Residues in contact with LEU 536 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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413B ARG* 3.4 46.9 - - - +
416B ILE* 5.0 14.1 - - + -
417B GLU* 5.0 1.1 - - - +
532B MET* 2.8 40.1 + - + +
533B PRO* 3.9 8.3 - - + +
535B LEU* 1.3 71.4 - - - +
537B LYS* 1.3 58.8 + - - +
539B GLU* 3.3 9.0 + - - +
540B GLN* 2.9 35.2 + - + +
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Residues in contact with LYS 537 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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533B PRO 3.0 17.4 + - - +
534B THR* 3.5 6.3 - - - +
536B LEU* 1.3 75.8 - - - +
538B LEU* 1.3 64.0 + - + +
540B GLN* 3.1 12.2 + - + +
541B GLU* 2.9 52.5 + - + +
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Residues in contact with LEU 538 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
392B ARG* 3.5 36.1 - - - +
393B ASP* 4.4 7.6 - - - +
396B LEU* 3.7 31.2 - - + -
473B VAL* 5.6 1.1 - - + -
534B THR* 2.8 35.8 + - + +
535B LEU* 3.7 6.5 - - + +
537B LYS* 1.3 74.5 - - + +
539B GLU* 1.3 63.4 + - - +
541B GLU* 3.2 27.6 + - - +
542B ARG* 2.9 38.6 + - + +
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Residues in contact with GLU 539 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
413B ARG* 2.9 44.2 + - - -
426B GLU* 3.6 19.0 - - - +
535B LEU 2.8 18.2 + - - +
536B LEU* 3.5 9.4 - - - +
538B LEU* 1.3 79.1 - - - +
540B GLN* 1.3 63.0 + - - +
542B ARG* 3.3 31.0 + - - +
543B LYS* 2.9 47.1 + - + +
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Residues in contact with GLN 540 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
149B LEU* 3.5 33.7 - - + +
153B LYS* 3.6 16.0 + - - +
536B LEU* 2.9 23.1 + - + +
537B LYS* 3.1 16.6 + - + +
539B GLU* 1.3 81.2 - - - +
541B GLU* 1.3 66.2 + - - +
543B LYS* 3.2 17.5 + - - +
544B THR* 2.8 30.9 + - - +
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Residues in contact with GLU 541 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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392B ARG* 4.2 9.2 + - - -
537B LYS* 2.9 43.7 + - + +
538B LEU* 3.2 27.8 + - + +
540B GLN* 1.3 77.7 - - + +
542B ARG* 1.3 56.6 + - - +
544B THR* 3.5 5.8 + - - -
545B ARG* 3.1 43.2 + - - +
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Residues in contact with ARG 542 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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393B ASP* 6.4 2.7 - - - -
535B LEU 4.9 1.4 + - - -
538B LEU* 2.9 35.4 + - + +
539B GLU* 3.6 39.9 + - - +
540B GLN 3.3 0.2 - - - -
541B GLU* 1.3 74.6 - - - +
543B LYS* 1.3 60.9 + - + +
545B ARG* 3.4 23.1 + - - +
546B ALA* 2.9 29.0 + - - +
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Residues in contact with LYS 543 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148B ALA 4.6 0.2 - - - +
149B LEU* 3.7 17.0 - - + -
152B THR* 2.4 48.1 + - + -
153B LYS* 5.7 4.8 - - + +
156B GLU* 2.3 38.0 + - - +
426B GLU* 2.9 37.5 + - - -
539B GLU* 2.9 38.4 + - + +
540B GLN* 3.2 17.4 + - - +
542B ARG* 1.3 74.6 - - + +
544B THR* 1.3 56.8 + - - +
546B ALA* 3.3 4.2 + - - +
547B GLY 3.0 10.0 + - - -
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Residues in contact with THR 544 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B ALA* 3.5 17.8 - - + +
149B LEU* 3.7 30.1 - - + +
540B GLN* 2.8 17.8 + - - +
541B GLU* 3.6 6.5 - - - -
543B LYS* 1.3 74.0 - - - +
545B ARG* 1.3 69.1 + - - +
547B GLY 3.0 9.9 + - - -
548B GLU* 3.3 22.0 + - - +
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Residues in contact with ARG 545 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
382B LEU* 3.8 32.6 - - + +
385B GLN* 3.7 40.3 + - - +
386B SER* 3.7 24.9 - - - +
389B THR* 4.7 4.0 + - - -
392B ARG* 5.8 2.0 - - - +
393B ASP* 4.6 12.5 + - - -
541B GLU* 3.1 22.9 + - - +
542B ARG* 3.7 31.8 - - - +
544B THR* 1.3 79.3 - - - +
546B ALA* 1.3 62.9 + - - +
548B GLU* 3.2 9.4 + - - +
549B ASN* 3.1 30.5 + - - +
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Residues in contact with ALA 546 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
152B THR* 3.9 7.6 - - + +
542B ARG 2.9 17.8 + - - +
543B LYS* 3.5 8.5 - - - +
544B THR 3.1 0.2 - - - -
545B ARG* 1.3 75.5 - - - +
547B GLY* 1.3 59.4 + - - +
549B ASN* 3.6 13.2 + - - +
550B LEU* 3.0 31.4 + - + +
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Residues in contact with GLY 547 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148B ALA* 3.4 15.9 - - - -
151B ARG* 2.8 26.4 + - - -
152B THR* 3.2 15.7 + - - -
543B LYS 3.0 9.1 + - - -
544B THR 3.0 3.9 + - - -
546B ALA* 1.3 79.4 - - - +
548B GLU* 1.3 53.1 + - - +
550B LEU* 3.2 25.1 - - - +
551B ALA 3.6 0.5 + - - -
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Residues in contact with GLU 548 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
148B ALA* 3.5 15.9 - - + +
151B ARG* 3.8 8.3 + - - +
378B LYS* 3.3 31.4 + - + +
382B LEU* 3.5 30.8 - - + +
385B GLN* 4.9 6.8 + - - +
544B THR* 3.3 22.7 - - - +
545B ARG* 3.2 3.9 + - - +
547B GLY* 1.3 73.2 - - - +
549B ASN* 1.4 66.1 + - - +
550B LEU 3.0 1.6 - - - -
551B ALA* 3.0 15.6 + - - +
552B ALA* 3.1 14.4 + - - +
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Residues in contact with ASN 549 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
379B LEU* 3.1 27.6 - - + +
382B LEU* 3.4 21.0 - - - +
545B ARG* 3.1 24.5 + - - +
546B ALA* 3.6 12.6 - - - +
548B GLU* 1.4 78.0 - - - +
550B LEU* 1.3 58.8 + - - +
551B ALA 3.1 0.3 + - - -
553B ARG* 2.8 53.2 + - + +
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Residues in contact with LEU 550 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141B ILE* 4.5 20.6 - - + +
151B ARG* 4.0 38.6 - - + +
152B THR* 4.3 7.4 - - - +
155B LEU* 3.8 29.6 - - + -
181B GLY 5.7 2.7 - - - +
182B GLY* 6.2 1.1 - - - -
185B TYR* 4.1 11.5 + - - +
546B ALA* 3.0 17.8 + - + +
547B GLY 3.2 12.3 - - - +
548B GLU 3.0 0.4 - - - -
549B ASN* 1.3 75.3 - - - +
551B ALA* 1.3 55.9 + - - +
553B ARG* 5.2 0.9 - - - -
554B PRO* 3.2 23.4 - - - +
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Residues in contact with ALA 551 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
141B ILE* 6.3 0.2 - - - -
151B ARG* 3.9 29.4 - - - +
378B LYS* 6.3 0.4 - - + -
547B GLY 3.6 0.6 + - - -
548B GLU* 3.0 8.9 + - - +
550B LEU* 1.3 80.4 - - - +
552B ALA* 1.3 61.7 + - - +
554B PRO* 3.6 6.3 - - - +
555B VAL* 3.5 19.8 - - - +
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Residues in contact with ALA 552 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
375B ALA* 3.3 19.6 - - - +
378B LYS* 3.6 36.3 - - + -
379B LEU* 3.9 17.3 - - + -
548B GLU 3.1 8.1 + - - +
551B ALA* 1.3 78.3 - - + +
553B ARG* 1.3 66.8 + - - +
554B PRO* 3.5 0.7 - - - -
555B VAL* 3.4 4.1 + - - +
556B TYR* 3.1 20.1 + - - +
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Residues in contact with ARG 553 (chain B).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181B GLY* 3.6 24.7 - - - +
279B TYR 4.9 6.1 + - - -
281B LEU* 4.4 7.1 - - - +
284B GLU* 2.8 42.4 + - - -
379B LEU* 3.8 23.6 + - + +
549B ASN* 2.8 48.8 + - + +
550B LEU* 5.2 0.4 - - - -
552B ALA* 1.3 73.0 - - - +
554B PRO* 1.3 66.3 - - + +
556B TYR 3.8 0.2 - - - -
557B LEU* 2.9 58.3 + - + +
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Residues in contact with PRO 554 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
138B LYS* 5.8 1.6 - - - +
181B GLY 3.3 21.3 - - - +
182B GLY* 4.0 13.2 - - - +
183B ASN* 2.6 43.3 + - - +
185B TYR* 6.0 0.7 - - - +
550B LEU 3.2 27.8 - - - +
551B ALA 3.6 7.6 - - - +
552B ALA 3.5 4.5 - - - -
553B ARG* 1.3 91.8 - - + +
555B VAL* 1.3 57.5 + - + +
558B GLN* 2.9 18.7 + - - +
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Residues in contact with VAL 555 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
371B PRO* 3.9 15.7 - - + +
372B ALA* 3.8 29.5 - - + +
375B ALA* 4.1 4.3 - - + -
551B ALA 3.5 20.6 - - - +
552B ALA* 3.6 5.8 - - - +
554B PRO* 1.3 81.9 - - + +
556B TYR* 1.3 63.8 + - - +
558B GLN* 3.3 5.5 + - - +
559B ALA* 3.3 17.7 + - - +
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Residues in contact with TYR 556 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
281B LEU* 3.4 35.4 - - + -
355B GLU* 4.1 12.5 + - - +
358B VAL* 4.2 9.8 - - + +
359B LEU* 4.3 4.4 - - + +
362B LEU* 4.4 16.6 - - + -
372B ALA* 3.7 19.1 - - + +
375B ALA* 3.8 8.2 - - + +
376B HIS* 3.3 35.2 + + + -
379B LEU* 3.8 23.3 - - + -
552B ALA 3.1 7.9 + - - +
553B ARG 4.1 0.7 - - - +
555B VAL* 1.3 78.3 - - - +
557B LEU* 1.3 61.9 + - + +
559B ALA* 3.2 10.7 + - + +
560B LEU* 3.1 58.2 + - + +
----------------------------------------------------------
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Residues in contact with LEU 557 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180B SER* 3.9 17.3 - - - +
181B GLY* 3.7 28.5 - - - +
183B ASN* 4.4 0.9 - - - -
279B TYR* 4.0 38.4 - - + +
281B LEU* 5.5 0.9 - - + -
379B LEU* 5.2 0.2 - - + -
553B ARG* 2.9 46.8 + - - +
554B PRO 4.3 0.2 - - - +
556B TYR* 1.3 89.6 - - + +
558B GLN* 1.3 65.5 + - - +
559B ALA 3.1 1.6 - - - -
560B LEU* 3.7 12.1 - - + +
561B ALA* 3.0 23.4 + - - +
574B ASP* 5.4 1.6 - - - +
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Residues in contact with GLN 558 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
180B SER* 6.1 0.2 - - - -
183B ASN* 3.6 27.2 + - - +
554B PRO 2.9 20.2 + - - +
555B VAL* 3.3 7.4 + - - +
557B LEU* 1.3 78.5 - - - +
559B ALA* 1.3 56.5 + - - +
561B ALA* 3.5 10.8 + - - +
562B ASP* 2.9 62.1 + - - +
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Residues in contact with ALA 559 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
358B VAL* 5.5 2.2 - - + -
361B TRP* 4.0 4.0 - - + -
362B LEU* 4.2 15.0 - - + -
372B ALA* 3.8 28.3 - - + -
555B VAL 3.3 4.1 + - - +
556B TYR* 3.2 15.7 + - + +
557B LEU 3.1 0.4 - - - -
558B GLN* 1.3 76.7 - - - +
560B LEU* 1.3 55.7 + - - +
562B ASP* 3.0 12.4 + - - +
563B TYR* 2.8 36.9 + - - +
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Residues in contact with LEU 560 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279B TYR* 3.7 42.6 - - + -
280B ALA 4.4 11.0 - - - +
354B GLU* 6.0 0.9 - - - +
358B VAL* 3.8 28.3 - - + -
556B TYR* 3.1 51.0 + - + +
557B LEU* 3.4 11.4 + - + +
559B ALA* 1.3 78.3 - - - +
561B ALA* 1.3 56.6 + - - +
563B TYR* 3.5 6.1 + - - +
564B LYS* 2.9 36.4 + - - +
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Residues in contact with ALA 561 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
279B TYR* 3.8 21.5 - - + +
557B LEU 3.0 17.5 + - - +
558B GLN* 3.7 14.8 - - - +
560B LEU* 1.3 76.3 - - - +
562B ASP* 1.3 58.6 + - - +
564B LYS* 3.2 3.5 + - - +
565B LYS* 2.9 29.0 + - - +
571B VAL* 3.8 18.1 - - + +
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Residues in contact with ASP 562 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361B TRP* 4.1 15.8 - - + -
558B GLN* 2.9 53.3 + - - +
559B ALA* 3.0 9.9 + - - +
561B ALA* 1.3 76.0 - - - +
563B TYR* 1.3 63.4 + - - +
565B LYS* 3.1 11.3 + - - +
566B SER* 2.9 20.6 + - - -
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Residues in contact with TYR 563 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
354B GLU* 4.1 24.3 - - - +
357B ALA* 3.4 40.2 - - + +
358B VAL* 3.7 25.4 - - + -
361B TRP* 3.8 43.2 - + + -
559B ALA 2.8 19.2 + - - +
560B LEU* 3.8 7.9 - - - +
562B ASP* 1.3 71.5 - - - +
564B LYS* 1.3 64.8 + - + +
566B SER* 2.6 33.6 + - - -
567B GLN* 3.0 42.3 + - + +
569B GLU* 5.4 0.7 - - - -
----------------------------------------------------------
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Residues in contact with LYS 564 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
278B ARG* 4.3 15.3 + - - +
279B TYR* 3.4 45.0 - - - +
354B GLU* 4.3 15.1 + - - +
560B LEU* 2.9 22.1 + - - +
561B ALA 3.6 0.9 - - - +
563B TYR* 1.3 76.4 - - + +
565B LYS* 1.3 69.1 + - - +
567B GLN* 3.0 11.4 + - - -
569B GLU* 3.0 49.2 + - + +
570B PHE 4.0 14.1 - - - +
571B VAL* 3.6 15.9 - - + -
----------------------------------------------------------
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Residues in contact with LYS 565 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
561B ALA 2.9 12.8 + - - +
562B ASP* 3.3 12.1 - - - +
564B LYS* 1.3 76.8 - - - +
566B SER* 1.3 57.9 + - - +
568B GLY* 2.9 21.4 + - - -
569B GLU 4.6 3.1 - - - +
571B VAL* 3.9 13.8 - - + +
----------------------------------------------------------
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Residues in contact with SER 566 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
361B TRP* 4.4 16.6 + - - -
562B ASP 2.9 10.9 + - - -
563B TYR* 2.6 32.0 + - - -
565B LYS* 1.3 75.8 - - - +
567B GLN* 1.3 69.7 + - - +
568B GLY 3.3 1.4 + - - -
----------------------------------------------------------
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Residues in contact with GLN 567 (chain B).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
563B TYR* 3.0 52.1 + - + +
564B LYS 3.0 6.6 + - - +
566B SER* 1.3 89.0 + - - +
568B GLY* 1.3 55.3 + - - +
569B GLU* 3.0 36.0 + - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il