Contacts of the helix formed by residues 74 - 127 (chain F) in PDB entry 3ZP0
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with GLU 74 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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103E GLU* 4.4 5.4 - - - +
69F GLU 4.7 0.5 - - - +
70F PHE* 3.3 18.7 - - + -
71F ASN* 2.7 56.4 + - - +
73F LEU* 1.3 81.4 - - - +
75F ARG* 1.3 63.2 + - - +
76F ARG 3.4 2.9 - - - -
77F ILE* 3.2 25.9 - - + +
78F GLU* 3.1 23.8 + - - +
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Residues in contact with ARG 75 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70F PHE 4.7 4.2 + - - -
71F ASN 4.2 9.0 + - - -
72F ASN* 3.0 49.5 + - - +
73F LEU* 3.6 2.4 - - - -
74F GLU* 1.3 76.5 - - - +
76F ARG* 1.3 62.0 + - + +
78F GLU* 2.8 37.8 + - - +
79F ASN* 2.9 29.3 + - - +
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Residues in contact with ARG 76 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
73F LEU 5.2 6.1 + - - -
74F GLU 3.4 0.6 - - - -
75F ARG* 1.3 78.9 - - + +
77F ILE* 1.3 74.1 + - + +
79F ASN* 3.2 7.9 + - - +
80F LEU* 2.8 28.9 + - - +
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Residues in contact with ILE 77 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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70F PHE* 3.9 18.1 - - + -
73F LEU 4.8 0.9 - - - +
74F GLU* 3.2 50.7 - - + +
76F ARG* 1.3 94.8 - - + +
78F GLU* 1.3 59.0 + - - +
80F LEU* 3.5 18.5 - - + +
81F ASN* 2.9 27.9 + - - +
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Residues in contact with GLU 78 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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68F ARG 5.3 1.7 - - - +
69F GLU* 5.7 0.3 - - - -
70F PHE* 3.7 40.7 + - + +
74F GLU 3.1 18.5 + - - +
75F ARG* 2.8 40.5 + - - +
77F ILE* 1.3 74.5 - - - +
79F ASN* 1.3 62.1 + - - +
81F ASN* 3.3 3.8 + - - +
82F LYS* 3.0 28.2 + - + +
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Residues in contact with ASN 79 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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75F ARG 2.9 17.7 + - - +
76F ARG* 3.4 8.3 + - - +
78F GLU* 1.3 74.3 - - - +
80F LEU* 1.3 61.5 + - - +
82F LYS* 3.2 17.8 + - - +
83F LYS* 2.9 60.6 + - - +
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Residues in contact with LEU 80 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76F ARG 2.8 16.6 + - - +
77F ILE* 3.5 22.0 - - + +
79F ASN* 1.3 78.0 - - - +
81F ASN* 1.3 62.0 + - - +
83F LYS* 3.3 5.1 + - - +
84F MET* 3.0 32.2 + - + +
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Residues in contact with ASN 81 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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66F VAL 4.9 0.2 + - - -
68F ARG* 2.5 49.5 + - - +
70F PHE* 3.8 28.1 - - + -
77F ILE 2.9 18.5 + - - +
78F GLU 3.6 5.5 + - - +
79F ASN 3.2 0.2 - - - -
80F LEU* 1.3 77.3 - - - +
82F LYS* 1.3 64.9 + - - +
84F MET* 3.8 7.6 - - - +
85F GLU* 3.1 35.8 + - - +
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Residues in contact with LYS 82 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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78F GLU* 3.0 16.7 + - + +
79F ASN* 3.5 18.4 + - - +
81F ASN* 1.3 80.3 - - - +
83F LYS* 1.3 87.0 + - + +
85F GLU* 3.9 3.3 - - - +
86F ASP* 3.0 48.6 + - - +
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Residues in contact with LYS 83 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79F ASN* 2.9 45.3 + - - +
80F LEU* 4.0 4.7 - - - +
82F LYS* 1.3 98.3 - - + +
84F MET* 1.3 61.6 + - - +
86F ASP* 4.2 8.2 + - + +
87F GLY* 2.9 24.9 + - - -
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Residues in contact with MET 84 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63F PHE* 3.2 40.6 - - + -
68F ARG* 4.8 10.3 - - - +
80F LEU* 3.0 28.1 + - + +
81F ASN* 3.8 7.6 - - - +
83F LYS* 1.3 76.8 - - - +
85F GLU* 1.3 77.0 + - + +
87F GLY* 3.3 1.3 + - - -
88F PHE* 3.1 47.8 + - + -
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Residues in contact with GLU 85 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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301E LEU* 4.8 4.5 - - - +
63F PHE* 3.9 18.2 - - + -
64F GLU 4.4 0.2 - - - +
65F ALA* 3.4 17.6 - - + +
66F VAL 2.8 45.3 + - - +
68F ARG* 3.3 18.2 + - - +
81F ASN* 3.1 25.7 + - - +
82F LYS* 4.1 3.4 - - - +
84F MET* 1.3 87.6 - - + +
86F ASP* 1.3 61.3 + - - +
88F PHE* 3.6 2.6 + - - +
89F LEU* 3.2 32.7 + - + +
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Residues in contact with ASP 86 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311E LYS* 4.1 17.9 + - - +
82F LYS* 3.0 36.8 + - - +
83F LYS* 4.2 11.0 + - + +
85F GLU* 1.3 74.0 - - - +
87F GLY* 1.3 64.5 + - - +
89F LEU* 3.4 12.3 + - - +
90F ASP* 3.1 33.8 + - - +
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Residues in contact with GLY 87 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83F LYS 2.9 21.0 + - - -
84F MET* 3.3 2.2 + - - -
86F ASP* 1.3 76.0 - - - +
88F PHE* 1.3 56.9 + - - +
90F ASP* 3.4 8.8 + - - +
91F VAL* 3.1 32.4 + - - +
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Residues in contact with PHE 88 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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63F PHE* 3.5 51.1 - + + -
84F MET* 3.1 50.7 + - + +
85F GLU 4.0 0.4 - - - +
87F GLY* 1.3 73.7 - - - +
89F LEU* 1.3 58.8 + - - +
91F VAL* 3.2 13.1 + - + +
92F TRP* 3.0 44.7 + + + -
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Residues in contact with LEU 89 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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300E PRO* 4.0 28.7 - - + -
309E TYR* 3.6 37.9 - - + +
310E VAL* 5.4 1.3 - - - -
311E LYS* 4.5 14.4 - - + -
62F GLN* 6.2 0.2 - - - +
63F PHE* 4.6 24.5 - - + +
65F ALA* 4.8 9.9 - - + +
85F GLU* 3.2 23.8 + - + +
86F ASP* 3.9 13.9 - - - +
87F GLY 3.4 0.2 - - - -
88F PHE* 1.3 75.6 - - - +
90F ASP* 1.3 55.7 + - - +
92F TRP* 3.9 5.1 - - + +
93F THR* 2.5 39.4 + - - -
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Residues in contact with ASP 90 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311E LYS* 2.6 35.6 + - - +
86F ASP* 3.1 20.5 + - - +
87F GLY* 3.6 6.8 - - - +
88F PHE 3.2 0.2 - - - -
89F LEU* 1.3 75.0 - - - +
91F VAL* 1.3 65.0 + - + +
93F THR* 3.8 6.5 + - - -
94F TYR* 3.0 24.9 + - - +
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Residues in contact with VAL 91 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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87F GLY 3.1 18.4 + - - +
88F PHE* 3.2 17.9 + - + +
90F ASP* 1.3 75.6 - - + +
92F TRP* 1.3 66.1 + - + +
94F TYR* 3.4 5.5 + - + +
95F ASN* 2.9 50.3 + - - +
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Residues in contact with TRP 92 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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309E TYR 5.2 1.8 - - - +
310E VAL* 4.3 3.5 - - + +
58F LYS 5.0 5.8 - - - -
59F MET* 4.3 13.2 - - + -
61F THR* 3.5 22.7 - - - -
62F GLN* 3.5 44.5 - - + +
63F PHE* 3.5 32.7 - - + +
88F PHE* 3.0 35.5 + - + +
89F LEU* 4.1 6.1 - - + +
91F VAL* 1.3 79.6 - - + +
93F THR* 1.3 61.3 + - - +
95F ASN* 3.5 31.1 - - + +
96F ALA* 2.9 32.1 + - - +
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Residues in contact with THR 93 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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310E VAL* 3.9 12.1 - - - +
311E LYS* 3.0 39.9 + - + +
312E SER* 3.8 18.6 - - - +
89F LEU 2.5 24.8 + - - -
90F ASP* 3.8 7.6 - - - -
92F TRP* 1.3 74.6 - - - +
94F TYR* 1.3 57.9 + - - +
96F ALA* 3.4 1.2 + - - +
97F GLU* 2.9 43.8 + - - +
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Residues in contact with TYR 94 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90F ASP 3.0 17.8 + - - +
91F VAL* 3.5 5.4 - - + +
93F THR* 1.3 74.0 - - - +
95F ASN* 1.3 83.4 + - - +
96F ALA 3.3 0.2 + - - -
97F GLU* 3.3 7.1 + - - +
98F LEU* 2.9 68.1 + - + +
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Residues in contact with ASN 95 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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59F MET* 3.7 9.1 - - + +
91F VAL* 2.9 34.9 + - - +
92F TRP* 3.3 40.1 + - + +
94F TYR* 1.3 91.6 - - - +
96F ALA* 1.3 58.1 + - - +
98F LEU* 3.9 2.7 - - - +
99F LEU* 3.0 31.9 + - - +
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Residues in contact with ALA 96 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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295E PHE* 4.2 15.5 - - + -
310E VAL* 4.2 18.2 - - + -
312E SER* 5.3 0.2 - - - +
315E LEU* 4.3 11.2 - - + -
59F MET* 3.4 17.9 - - + +
92F TRP 2.9 17.3 + - - +
93F THR 3.7 3.4 - - - +
95F ASN* 1.3 77.2 - - - +
97F GLU* 1.3 63.2 + - - +
99F LEU* 3.4 1.9 + - - +
100F VAL* 3.1 30.4 + - + +
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Residues in contact with GLU 97 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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311E LYS 4.8 0.2 - - - +
312E SER* 3.0 40.1 + - - +
313E ASN 4.8 0.9 + - - -
314E ARG 5.1 1.6 - - - +
315E LEU* 3.8 15.3 - - + -
93F THR* 2.9 28.9 + - - +
94F TYR* 4.0 5.4 - - - +
96F ALA* 1.3 77.3 - - - +
98F LEU* 1.3 58.2 + - - +
100F VAL* 3.6 2.2 + - - +
101F LEU* 3.0 38.4 + - + +
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Residues in contact with LEU 98 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23E ILE* 4.3 21.5 - - + -
94F TYR* 2.9 56.7 + - + +
95F ASN* 3.9 3.1 - - - +
97F GLU* 1.3 74.2 - - - +
99F LEU* 1.3 61.2 + - - +
101F LEU* 3.2 8.4 + - + +
102F MET* 2.8 62.0 + - + +
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Residues in contact with LEU 99 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55F ILE* 4.0 39.5 - - + +
58F LYS* 5.3 7.9 - - + -
59F MET* 3.7 22.4 - - + -
95F ASN 3.0 19.2 + - - +
96F ALA 3.9 3.4 - - - +
98F LEU* 1.3 77.6 - - - +
100F VAL* 1.3 57.6 + - + +
102F MET* 4.0 15.2 - - + -
103F GLU* 3.0 56.7 + - + +
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Residues in contact with VAL 100 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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36E ILE* 4.2 14.4 - - + -
295E PHE* 6.1 0.7 - - + -
315E LEU* 4.2 22.0 - - + -
316E VAL 3.4 35.0 - - - +
317E LEU* 4.0 21.8 - - + -
55F ILE* 5.2 5.8 - - + -
96F ALA* 3.1 18.7 + - + +
97F GLU* 3.9 4.9 - - - +
99F LEU* 1.3 76.3 - - - +
101F LEU* 1.3 61.3 + - + +
104F ASN* 2.8 43.6 + - - +
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Residues in contact with LEU 101 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21E ASP* 3.8 35.2 - - + +
22E THR* 3.8 26.6 - - - +
23E ILE* 3.9 25.2 + - + -
97F GLU* 3.0 24.4 + - + +
98F LEU* 3.2 12.8 + - + +
100F VAL* 1.3 82.6 - - + +
102F MET* 1.3 61.6 + - - +
104F ASN* 3.6 0.5 + - - +
105F GLU* 3.3 16.3 + - - +
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Residues in contact with MET 102 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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23E ILE* 4.4 20.6 - - + -
98F LEU* 2.8 54.8 + - + +
99F LEU* 4.1 17.7 - - + +
101F LEU* 1.3 71.3 - - - +
103F GLU* 1.3 63.8 + - + +
105F GLU* 3.3 7.3 + - - +
106F ARG* 3.1 33.5 + - - +
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Residues in contact with GLU 103 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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317E LEU* 5.0 1.3 - - + -
51F LYS* 2.8 45.4 + - + +
55F ILE* 3.9 22.9 - - + -
99F LEU* 3.0 41.4 + - + +
100F VAL* 4.2 1.6 - - - +
102F MET* 1.3 79.1 - - + +
104F ASN* 1.3 60.5 + - - +
106F ARG* 3.1 22.9 + - - +
107F THR* 2.7 29.2 + - - -
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Residues in contact with ASN 104 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20E VAL* 3.7 10.6 - - + +
21E ASP* 3.0 30.0 + - - +
22E THR* 4.1 6.7 - - + -
316E VAL 3.1 21.6 + - - -
317E LEU* 3.3 12.0 - - - +
318E ALA* 2.8 34.3 + - + +
100F VAL* 2.8 32.7 + - - +
101F LEU 3.8 0.9 - - - +
103F GLU* 1.3 70.9 - - - +
105F GLU* 1.3 62.4 + - - +
107F THR* 3.3 6.1 + - - +
108F LEU* 3.1 28.8 + - - +
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Residues in contact with GLU 105 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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22E THR* 3.6 28.0 + - - +
23E ILE* 4.7 11.8 - - + +
24E MET* 3.7 37.1 + - - +
101F LEU 3.3 10.0 + - - +
102F MET* 3.3 12.2 + - - +
103F GLU 3.2 0.8 - - - -
104F ASN* 1.3 79.5 - - - +
106F ARG* 1.3 64.3 + - + +
108F LEU* 3.9 3.5 - - - +
109F ASP* 3.0 43.0 + - - +
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Residues in contact with ARG 106 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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51F LYS* 4.0 9.9 - - - +
102F MET* 3.1 15.6 + - - +
103F GLU* 3.1 29.5 + - - +
105F GLU* 1.3 78.4 - - + +
107F THR* 1.3 59.8 + - - +
109F ASP* 3.5 6.4 + - - +
110F PHE* 2.9 28.4 + - - +
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Residues in contact with THR 107 (chain F).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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318E ALA* 3.8 26.7 + - + +
319E THR 3.9 6.3 - - - +
320E GLY 4.2 5.2 - - - +
48F VAL* 4.4 11.4 - - + +
51F LYS* 2.8 34.9 + - - +
103F GLU 2.7 16.4 + - - -
104F ASN* 3.7 6.2 + - - -
106F ARG* 1.3 71.2 - - - +
108F LEU* 1.3 65.5 + - - +
110F PHE* 3.2 7.8 + - + +
111F HIS* 3.1 42.7 + - + +
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Residues in contact with LEU 108 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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20E VAL* 4.9 2.2 - - + -
22E THR* 4.0 23.1 - - + -
28E VAL* 3.9 24.7 - - + -
30E VAL* 3.8 25.8 - - + -
318E ALA* 4.2 9.4 - - + -
320E GLY 4.0 14.6 - - - +
321E LEU* 4.4 0.8 - - - +
322E ARG* 4.2 28.9 - - + +
6F ILE* 4.8 2.8 - - - +
104F ASN 3.1 18.3 + - - +
105F GLU* 3.9 4.9 - - - +
107F THR* 1.3 76.6 - - - +
109F ASP* 1.3 59.7 + - - +
111F HIS* 3.4 8.2 + - - +
112F ASP* 3.1 24.8 + - - +
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Residues in contact with ASP 109 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1F GLY* 4.1 6.9 - - - -
2F LEU* 3.4 46.1 + - + +
3F PHE* 3.4 16.8 - - + -
105F GLU* 3.0 34.2 + - - +
106F ARG* 3.8 7.0 - - - +
108F LEU* 1.3 77.5 - - - +
110F PHE* 1.3 54.5 + - - +
112F ASP* 3.2 7.3 + - - +
113F SER* 2.8 34.5 + - - -
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Residues in contact with PHE 110 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3F PHE* 5.7 0.2 - - - -
43F LYS* 4.3 7.4 - - + -
44F ALA* 3.7 32.8 - - + -
47F GLY* 4.6 11.2 - - - -
48F VAL* 4.2 17.0 - - + -
51F LYS* 6.0 0.9 - - - +
106F ARG 2.9 15.8 + - - +
107F THR* 3.2 14.1 - - - +
109F ASP* 1.3 74.1 - - - +
111F HIS* 1.3 60.9 + + - +
113F SER* 3.1 10.7 + - - -
114F ASN* 2.8 62.8 + - - -
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Residues in contact with HIS 111 (chain F).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
319E THR 2.9 25.8 + - - -
320E GLY 3.5 21.3 + - - -
321E LEU* 3.7 22.9 - - + +
6F ILE* 3.6 5.8 - - + -
21F TRP* 3.8 29.8 - + - -
22F TYR* 2.5 33.2 + - - +
44F ALA* 4.5 2.5 - - + -
48F VAL* 4.2 8.9 - - + +
107F THR* 3.1 28.7 + - + +
108F LEU* 3.6 6.5 - - - +
110F PHE* 1.3 78.4 - + - +
112F ASP* 1.3 62.7 + - - +
114F ASN* 3.3 2.9 + - - +
115F VAL* 3.0 27.7 + - - +
----------------------------------------------------------
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Residues in contact with ASP 112 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1F GLY* 3.3 20.9 + - - -
3F PHE* 3.0 30.8 + - + -
4F GLY 3.4 3.1 + - - -
5F ALA 3.1 8.9 + - - -
6F ILE* 2.7 44.9 + - + +
108F LEU 3.1 14.1 + - - +
109F ASP* 3.3 13.9 - - - +
111F HIS* 1.3 75.3 - - - +
113F SER* 1.3 62.3 + - - +
115F VAL* 3.2 2.8 + - - +
116F LYS* 3.0 22.3 + - - +
----------------------------------------------------------
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Residues in contact with SER 113 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3F PHE* 3.8 34.2 - - - -
109F ASP 2.8 16.0 + - - -
110F PHE* 3.2 16.0 - - - -
112F ASP* 1.3 72.7 - - - +
114F ASN* 1.3 59.3 + - - +
116F LYS* 3.2 2.3 + - - +
117F ASN* 2.9 48.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN 114 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
22F TYR* 2.9 45.2 + - + -
40F SER* 5.1 10.9 - - - -
43F LYS* 5.9 2.3 - - - +
44F ALA* 3.7 5.1 - - - +
110F PHE* 2.8 60.0 + - - +
111F HIS 3.3 1.3 + - - +
113F SER* 1.3 73.2 + - - +
115F VAL* 1.3 60.7 + - - +
117F ASN* 4.0 8.3 + - - +
118F LEU* 3.2 24.9 + - - +
----------------------------------------------------------
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Residues in contact with VAL 115 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9E ILE* 4.2 10.3 - - + +
10E GLY 4.9 2.2 - - - +
11E TYR* 4.0 17.5 - - + -
5F ALA* 3.7 12.6 - - + -
6F ILE* 3.8 16.8 - - + -
10F ILE* 3.6 30.1 - - + -
22F TYR* 3.5 27.4 - - + -
111F HIS 3.0 18.7 + - - +
112F ASP 3.2 6.5 + - - +
114F ASN* 1.3 72.1 - - - +
116F LYS* 1.3 60.4 + - - +
118F LEU* 3.4 5.5 + - - +
119F TYR* 3.0 27.0 + - - +
----------------------------------------------------------
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Residues in contact with LYS 116 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
3F PHE* 2.8 39.0 - - + +
5F ALA* 3.9 7.4 - - + +
9F PHE* 4.2 24.0 - - + -
112F ASP 3.0 16.2 + - - +
113F SER* 3.7 4.3 - - - +
115F VAL* 1.3 78.5 - - - +
117F ASN* 1.3 60.6 + - - +
119F TYR* 3.4 8.0 + - - +
120F ASP* 2.8 57.5 + - - +
----------------------------------------------------------
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Residues in contact with ASN 117 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
113F SER* 2.9 36.0 + - - +
114F ASN* 4.0 9.2 + - - +
116F LYS* 1.3 80.0 - - - +
118F LEU* 1.3 57.3 + - - +
120F ASP* 3.4 9.3 + - - +
121F LYS* 2.9 30.4 + - - +
----------------------------------------------------------
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Residues in contact with LEU 118 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9E ILE* 4.0 22.2 - - + -
22F TYR* 3.9 29.2 - - + -
23F GLY* 4.3 7.2 - - - +
24F TYR* 3.3 27.8 - - + +
37F ASP* 4.0 17.5 - - + +
40F SER* 4.0 13.7 - - - +
114F ASN 3.2 15.5 + - - +
115F VAL* 3.8 4.3 - - - +
117F ASN* 1.3 76.3 - - - +
119F TYR* 1.3 66.3 + - - +
121F LYS* 3.3 29.1 + - - +
122F VAL* 3.1 22.0 + - + +
----------------------------------------------------------
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Residues in contact with TYR 119 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
9E ILE* 3.9 19.5 - - + +
9F PHE* 3.9 31.9 - + + -
10F ILE* 5.1 1.8 - - + -
115F VAL 3.0 18.1 + - - +
116F LYS* 3.5 10.1 - - - +
118F LEU* 1.3 76.2 - - - +
120F ASP* 1.3 78.1 + - - +
122F VAL* 3.1 5.4 + - - +
123F ARG* 2.9 24.4 + - - +
132F GLU* 2.6 43.3 + - - +
134F GLY* 4.9 5.7 + - - -
136F GLY* 3.6 33.4 + - - -
137F CYS 4.9 1.0 + - - -
138F PHE* 3.5 30.6 - + - -
----------------------------------------------------------
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Residues in contact with ASP 120 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
116F LYS* 2.8 56.1 + - - +
117F ASN* 3.8 10.2 - - - +
119F TYR* 1.3 77.9 - - - +
121F LYS* 1.3 57.6 - - - +
123F ARG* 3.1 33.6 + - - +
124F LEU* 2.8 38.0 + - + +
----------------------------------------------------------
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Residues in contact with LYS 121 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
24F TYR* 3.9 9.1 + - - -
37F ASP* 4.5 6.0 + - - -
117F ASN 2.9 17.8 + - - +
118F LEU* 3.5 32.6 + - - +
120F ASP* 1.3 75.9 - - - +
122F VAL* 1.3 63.4 + - + +
124F LEU* 3.2 23.5 + - + +
125F GLN* 3.3 29.3 + - + +
152F VAL 5.9 1.0 + - - -
153F ARG 5.3 3.0 + - - -
155F GLY* 6.0 3.7 - - - +
----------------------------------------------------------
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Residues in contact with VAL 122 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7E ILE* 4.7 4.5 - - + -
9E ILE* 3.7 27.6 - - + -
24F TYR* 3.7 20.0 - - + +
118F LEU* 3.1 8.7 + - + +
119F TYR 3.1 8.1 + - - +
121F LYS* 1.3 75.5 - - - +
123F ARG* 1.3 67.4 + - - +
125F GLN* 3.2 10.6 + - - +
126F LEU* 3.1 34.0 + - + +
138F PHE* 3.7 26.0 - - + -
152F VAL* 4.1 22.4 - - + +
----------------------------------------------------------
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Residues in contact with ARG 123 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
119F TYR* 2.9 17.9 + - + +
120F ASP* 3.3 41.7 + - - +
122F VAL* 1.3 77.7 - - - +
124F LEU* 1.3 83.3 + - - +
126F LEU* 4.2 0.7 - - - +
127F ARG* 3.2 22.5 + - - +
132F GLU* 3.5 29.6 - - - +
138F PHE* 3.8 27.1 - - + -
----------------------------------------------------------
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Residues in contact with LEU 124 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
120F ASP* 2.8 26.6 + - + +
121F LYS* 3.5 13.5 - - - +
122F VAL 3.2 0.4 - - - -
123F ARG* 1.3 98.2 - - - +
125F GLN* 1.3 62.6 + - + +
127F ARG* 3.6 16.5 - - - +
----------------------------------------------------------
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Residues in contact with GLN 125 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
121F LYS* 3.3 28.5 + - + +
122F VAL* 3.2 13.4 + - - +
124F LEU* 1.3 78.3 - - + +
126F LEU* 1.3 74.7 + - + +
127F ARG* 3.3 12.3 + - - +
129F ASN* 5.4 0.7 + - - -
152F VAL* 3.6 16.3 + - + +
155F GLY* 3.3 43.6 + - - +
157F TYR* 3.4 41.0 + - + +
158F ASP* 5.1 4.7 - - - +
----------------------------------------------------------
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Residues in contact with LEU 126 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
7E ILE* 4.3 2.7 - - + -
122F VAL* 3.1 26.6 + - + +
123F ARG 4.2 3.4 - - - +
125F GLN* 1.3 81.0 - - + +
127F ARG* 1.3 71.8 + - - +
129F ASN* 2.8 27.0 + - + +
130F ALA* 4.2 14.4 - - + +
138F PHE* 3.7 40.6 - - + -
140F PHE* 4.1 23.6 - - + -
152F VAL* 4.3 11.7 - - + -
157F TYR* 3.7 30.7 - - + -
----------------------------------------------------------
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Residues in contact with ARG 127 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
123F ARG 3.2 13.4 + - - +
124F LEU 3.6 14.1 - - - +
125F GLN 3.2 13.5 + - - +
126F LEU* 1.3 81.2 - - - +
128F ASP* 1.3 75.9 + - - +
129F ASN* 4.3 11.8 - - - +
130F ALA 4.0 10.6 - - - +
158F ASP* 3.5 32.9 + - - -
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il