Contacts of the helix formed by residues 16 - 50 (chain D) in PDB entry 4AFL


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASN 16 (chain D).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     10D  TYR*     2.9    73.0    +      -       +      +
     11D  LEU*     4.6     8.5    -      -       +      -
     13D  SER*     2.9    20.2    +      -       -      +
     15D  GLU*     1.3    80.7    -      -       -      +
     17D  LEU*     1.3    65.3    +      -       -      +
     18D  PRO*     3.3     1.8    -      -       -      -
     19D  PHE*     3.2    16.2    +      -       +      +
     20D  GLU*     3.0    23.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 17 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     11D  LEU      5.4     0.9    -      -       -      -
     13D  SER      3.4     3.8    +      -       -      -
     14D  ILE*     3.4    10.5    +      -       +      +
     16D  ASN*     1.3    78.1    -      -       -      +
     18D  PRO*     1.3    68.9    -      -       +      +
     20D  GLU*     3.9     3.3    -      -       -      -
     21D  LEU*     2.9    40.8    +      -       +      +
     92D  MSE      3.7    21.5    -      -       +      -
     93D  VAL*     4.4     8.5    -      -       +      -
     96D  HIS*     3.6    39.5    -      -       +      +
     49E  TYR*     3.9    14.1    -      -       +      +
     65E  LEU*     3.6    40.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with PRO 18 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     14D  ILE      3.5     7.0    -      -       -      +
     15D  GLU*     3.4    16.8    -      -       -      +
     16D  ASN      3.5     0.4    -      -       -      -
     17D  LEU*     1.3    96.5    -      -       +      +
     19D  PHE*     1.3    61.3    +      -       +      +
     21D  LEU*     3.3     3.3    +      -       +      +
     22D  GLN*     3.0    27.3    +      -       -      +
     49E  TYR*     4.2    17.3    -      -       +      -
     50E  MSE      3.6    44.4    -      -       +      +
     53E  ALA*     4.8     8.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with PHE 19 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     15D  GLU      3.8    21.3    -      -       -      -
     16D  ASN*     3.2    16.2    +      -       +      +
     18D  PRO*     1.3    80.7    -      -       +      +
     20D  GLU*     1.3    57.9    +      -       -      +
     22D  GLN*     3.3     7.9    +      -       -      +
     23D  ARG*     2.8    29.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 20 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
      7D  LEU*     5.9     0.3    -      -       -      +
     11D  LEU*     3.5    41.6    -      -       +      +
     16D  ASN      3.0    16.1    +      -       -      +
     17D  LEU*     4.1     3.4    -      -       -      +
     19D  PHE*     1.3    75.1    -      -       -      +
     21D  LEU*     1.3    58.8    +      -       -      +
     23D  ARG*     3.4    24.3    +      -       -      +
     24D  ASN*     2.8    45.5    +      -       -      +
     88D  GLN*     4.2     9.7    +      -       -      -
     92D  MSE      3.6    31.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 21 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     17D  LEU*     2.9    39.6    +      -       +      +
     18D  PRO*     3.5     4.5    -      -       +      +
     20D  GLU*     1.3    75.7    -      -       -      +
     22D  GLN*     1.3    59.3    +      -       -      +
     24D  ASN*     3.4     3.9    +      -       -      +
     25D  PHE*     3.0    28.3    +      -       -      +
     89D  THR*     3.8    27.1    -      -       +      -
     92D  MSE      4.2     4.8    -      -       +      +
     93D  VAL*     4.0    13.9    -      -       +      -
     42E  ILE*     6.1     0.2    -      -       +      -
     46E  ALA*     4.6     8.7    -      -       +      -
     49E  TYR*     4.9     6.3    -      -       +      -
     50E  MSE      4.0    20.0    -      -       +      -
     65E  LEU*     4.9     2.0    -      -       +      -
     68E  ILE*     4.1    33.0    -      -       +      -
     72E  TYR*     4.5     7.2    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLN 22 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     18D  PRO      3.0    13.0    +      -       -      +
     19D  PHE*     3.6    10.5    -      -       -      +
     21D  LEU*     1.3    73.6    -      -       -      +
     23D  ARG*     1.3    66.1    +      -       -      +
     25D  PHE*     3.2    11.6    +      -       -      +
     26D  GLN*     3.0    51.6    +      -       +      +
     43E  ASP*     5.2     6.4    +      -       -      +
     46E  ALA*     5.4     3.6    -      -       -      +
     47E  THR*     5.2     8.4    -      -       -      +
     50E  MSE      3.5    24.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 23 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     19D  PHE      2.8    18.1    +      -       -      +
     20D  GLU*     3.4    29.9    +      -       -      +
     22D  GLN*     1.3    75.4    -      -       -      +
     24D  ASN*     1.3    64.7    +      -       -      +
     26D  GLN*     3.1     9.9    +      -       -      +
     27D  LEU*     2.9    51.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ASN 24 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     20D  GLU*     2.8    34.8    +      -       -      +
     21D  LEU*     3.7     5.6    -      -       -      +
     23D  ARG*     1.3    73.0    -      -       -      +
     25D  PHE*     1.3    55.3    +      -       -      +
     27D  LEU*     3.2    17.7    +      -       -      +
     28D  MSE      2.9    30.0    +      -       -      +
     85D  LEU*     3.6    13.2    -      -       +      +
     88D  GLN*     3.7    19.3    +      -       -      +
     89D  THR*     2.8    39.2    +      -       +      +
     92D  MSE      3.8    19.2    -      -       -      +
     72E  TYR*     4.8     3.6    -      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 25 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     21D  LEU      3.0    17.2    +      -       -      +
     22D  GLN*     3.2    14.1    +      -       -      +
     24D  ASN*     1.3    76.2    -      -       -      +
     26D  GLN*     1.3    73.7    +      -       -      +
     28D  MSE      3.4     9.8    +      -       +      +
     29D  ARG*     2.9    50.6    +      -       +      +
     39E  LYS*     3.5    37.9    -      -       +      -
     40E  ALA*     5.7     0.2    -      -       -      -
     42E  ILE*     4.6     9.0    -      -       +      -
     43E  ASP*     3.6    38.8    -      -       +      -
     46E  ALA*     6.2     1.3    -      -       +      -
     72E  TYR*     4.1    16.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 26 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     22D  GLN*     3.0    43.2    +      -       +      +
     23D  ARG*     3.1     8.0    +      -       -      +
     25D  PHE*     1.3    86.9    -      -       -      +
     27D  LEU*     1.3    64.9    +      -       -      +
     28D  MSE      3.1     1.3    -      -       -      -
     29D  ARG*     2.8    41.6    +      -       -      +
     30D  ASP*     2.9    30.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 27 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     23D  ARG*     2.9    41.8    +      -       +      +
     24D  ASN*     3.2    26.9    +      -       -      +
     26D  GLN*     1.3    74.2    -      -       -      +
     28D  MSE      1.3    56.5    +      -       -      +
     30D  ASP*     3.4    11.5    +      -       +      +
     31D  LEU*     3.1    32.1    +      -       +      +
     85D  LEU*     3.8    20.2    -      -       +      -
     88D  GLN*     5.2     4.0    -      -       -      +
----------------------------------------------------------
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Residues in contact with MSE 28 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     24D  ASN      2.9    16.9    +      -       -      +
     25D  PHE*     3.5    13.5    -      -       +      +
     27D  LEU*     1.3    75.9    -      -       -      +
     29D  ARG*     1.3    60.1    +      -       +      +
     31D  LEU*     3.3     3.9    +      -       -      +
     32D  ASP*     2.9    35.8    +      -       -      +
     82D  LYS*     3.7    47.3    -      -       +      +
     85D  LEU*     3.5    21.3    -      -       +      +
     86D  ALA*     4.2    13.7    -      -       +      +
     39E  LYS*     3.7    42.4    -      -       +      -
     72E  TYR*     4.5    15.7    -      -       +      +
     75E  CYS*     5.1     4.0    -      -       -      -
----------------------------------------------------------
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Residues in contact with ARG 29 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     25D  PHE*     2.9    38.7    +      -       +      +
     26D  GLN*     2.8    52.0    +      -       -      +
     28D  MSE      1.3    74.0    -      -       +      +
     30D  ASP*     1.3    61.8    +      -       -      +
     32D  ASP*     3.4    10.6    +      -       -      +
     33D  GLN*     2.9    28.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 30 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     26D  GLN*     2.9    18.4    +      -       -      +
     27D  LEU*     3.5    15.9    -      -       +      +
     29D  ARG*     1.3    75.3    -      -       -      +
     31D  LEU*     1.3    66.2    +      -       +      +
     33D  GLN*     3.2    19.9    +      -       -      +
     34D  ARG*     3.1    42.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 31 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     27D  LEU*     3.1    19.2    +      -       +      +
     28D  MSE      3.3     7.2    +      -       -      +
     30D  ASP*     1.3    75.1    -      -       +      +
     32D  ASP*     1.3    58.6    +      -       -      +
     34D  ARG*     3.0    23.0    +      -       -      +
     35D  THR*     3.0    17.5    +      -       -      +
     78D  PHE*     3.8    33.7    -      -       +      +
     81D  ASP*     3.8    42.8    -      -       +      +
     82D  LYS*     3.9    20.2    -      -       +      +
     85D  LEU*     4.1    17.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 32 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     28D  MSE      2.9    26.9    +      -       -      +
     29D  ARG*     3.5     9.6    -      -       -      +
     30D  ASP      3.3     0.2    -      -       -      -
     31D  LEU*     1.3    72.5    -      -       -      +
     33D  GLN*     1.3    55.0    +      -       -      +
     35D  THR*     3.1     7.0    +      -       -      -
     36D  GLU*     2.7    38.0    +      -       -      +
     82D  LYS*     2.8    23.3    +      -       -      +
     39E  LYS*     3.0    36.7    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 33 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     29D  ARG      2.9    14.8    +      -       -      +
     30D  ASP*     3.4    27.9    +      -       -      +
     32D  ASP*     1.3    74.6    -      -       -      +
     34D  ARG*     1.3    76.2    +      -       +      +
     36D  GLU*     3.5     6.4    -      -       -      +
     37D  ASP*     2.9    50.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with ARG 34 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     30D  ASP*     3.1    36.1    +      -       -      +
     31D  LEU*     3.0    14.0    +      -       -      +
     33D  GLN*     1.3    93.4    -      -       +      +
     35D  THR*     1.3    58.2    +      -       -      +
     37D  ASP*     3.5     8.6    +      -       -      +
     38D  LEU*     3.0    31.8    +      -       -      +
     78D  PHE*     3.7    41.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 35 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     31D  LEU      3.0     7.5    +      -       -      +
     32D  ASP*     3.1     9.5    +      -       -      -
     34D  ARG*     1.3    74.1    -      -       -      +
     36D  GLU*     1.3    65.4    +      -       -      +
     37D  ASP      3.2     0.2    -      -       -      -
     38D  LEU*     4.3     5.8    -      -       -      -
     39D  LYS*     2.9    48.5    +      -       -      +
     75D  CYS*     4.4    14.8    -      -       -      +
     78D  PHE*     3.4    34.3    -      -       +      -
     79D  GLY      4.8     0.4    -      -       -      +
     82D  LYS*     2.8    34.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 36 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     32D  ASP      2.7    23.8    +      -       -      +
     33D  GLN*     3.5     8.1    -      -       -      +
     35D  THR*     1.3    76.2    +      -       -      +
     37D  ASP*     1.3    64.6    +      -       -      +
     39D  LYS*     3.4     6.8    +      -       -      +
     40D  ALA*     3.3    20.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASP 37 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     33D  GLN*     2.9    37.9    +      -       -      +
     34D  ARG*     3.7     8.8    -      -       -      +
     36D  GLU*     1.3    76.5    -      -       -      +
     38D  LEU*     1.3    65.4    +      -       -      +
     40D  ALA*     3.4     8.0    +      -       -      +
     41D  GLU*     3.2    30.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 38 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     34D  ARG      3.0    17.2    +      -       -      +
     35D  THR*     3.8     6.5    -      -       -      +
     37D  ASP*     1.3    74.4    -      -       +      +
     39D  LYS*     1.3    57.8    +      -       -      +
     41D  GLU*     3.0    26.4    +      -       -      +
     42D  ILE*     2.8    32.3    +      -       +      +
     71D  ALA*     3.7    23.6    -      -       +      +
     74D  LYS*     3.5    26.7    -      -       +      +
     75D  CYS*     3.4    40.8    -      -       +      +
     78D  PHE*     3.7    18.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 39 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     35D  THR*     2.9    34.0    +      -       -      +
     36D  GLU*     3.9     6.5    -      -       -      +
     38D  LEU*     1.3    73.4    -      -       -      +
     40D  ALA*     1.3    60.4    +      -       -      +
     42D  ILE*     3.3    11.4    +      -       +      -
     43D  ASP*     2.8    30.7    +      -       -      +
     72D  TYR*     6.5     0.2    -      -       +      -
     75D  CYS*     3.7    28.5    -      -       -      -
     82D  LYS*     4.9     2.8    -      -       -      +
     25E  PHE*     3.4    24.6    -      -       +      -
     28E  MSE      3.7    26.1    -      -       +      -
     32E  ASP*     2.6    41.6    +      -       -      +
     82E  LYS*     4.9     3.2    -      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 40 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     36D  GLU      3.3    12.5    +      -       -      +
     37D  ASP*     3.8     9.9    -      -       -      +
     38D  LEU      3.3     0.2    -      -       -      -
     39D  LYS*     1.3    76.3    -      -       -      +
     41D  GLU*     1.3    62.5    +      -       +      +
     43D  ASP*     3.5     8.8    -      -       -      +
     44D  LYS*     3.1    21.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 41 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     37D  ASP*     3.2    20.4    +      -       -      +
     38D  LEU*     3.0    27.4    +      -       +      +
     40D  ALA*     1.3    76.4    -      -       +      +
     42D  ILE*     1.3    60.1    +      -       +      +
     44D  LYS*     3.0     7.0    +      -       -      +
     45D  LEU*     2.9    44.7    +      -       +      +
     71D  ALA*     5.0     5.6    -      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 42 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     38D  LEU      2.8    21.7    +      -       -      +
     39D  LYS*     3.3    14.8    +      -       +      +
     41D  GLU*     1.3    75.7    -      -       -      +
     43D  ASP*     1.3    54.4    +      -       -      +
     45D  LEU*     4.0     6.8    -      -       -      +
     46D  ALA*     2.8    44.0    +      -       +      +
     68D  ILE*     4.9     5.9    -      -       +      +
     71D  ALA*     3.7    28.5    -      -       +      +
     72D  TYR*     3.5    62.4    -      -       +      +
     75D  CYS*     4.7     7.9    -      -       +      -
     25E  PHE*     3.9    14.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASP 43 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     39D  LYS      2.8    18.2    +      -       -      +
     40D  ALA*     3.5    10.4    -      -       -      +
     42D  ILE*     1.3    77.7    -      -       -      +
     44D  LYS*     1.3    53.8    +      -       -      +
     46D  ALA*     4.1     3.4    -      -       -      +
     47D  THR*     2.6    47.7    +      -       -      -
     25E  PHE*     3.7    31.3    -      -       +      -
----------------------------------------------------------
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Residues in contact with LYS 44 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     40D  ALA      3.1    12.7    +      -       -      +
     41D  GLU*     3.0    10.1    +      -       -      +
     43D  ASP*     1.3    72.9    -      -       -      +
     45D  LEU*     1.3    65.5    +      -       +      +
     47D  THR*     3.8     4.8    -      -       -      -
     48D  GLU*     3.0    29.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 45 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     41D  GLU*     2.9    33.8    +      -       +      +
     42D  ILE*     4.0     4.0    -      -       -      +
     44D  LYS*     1.3    78.9    -      -       +      +
     46D  ALA*     1.3    58.1    +      -       -      +
     48D  GLU*     3.3    12.5    +      -       -      +
     49D  TYR*     2.9    27.7    +      -       -      +
     64D  LEU*     3.9    23.2    -      -       +      +
     67D  GLN*     3.8    49.1    -      -       +      +
     68D  ILE*     3.7    22.5    -      -       +      +
     71D  ALA*     5.0     4.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 46 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     42D  ILE*     2.8    29.5    +      -       +      +
     43D  ASP*     4.1     3.8    -      -       -      +
     45D  LEU*     1.3    70.2    -      -       -      +
     47D  THR*     1.3    66.5    +      -       -      +
     49D  TYR*     3.2    17.4    +      -       -      +
     50D  MSE      3.4    13.7    +      -       -      +
     68D  ILE*     4.4     6.9    -      -       +      +
     18E  PRO*     5.5     2.4    -      -       -      +
     21E  LEU*     4.7    25.7    -      -       +      +
     22E  GLN*     4.4    13.8    +      -       +      +
     25E  PHE*     6.2     2.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with THR 47 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     43D  ASP*     2.6    34.4    +      -       -      -
     44D  LYS*     3.8     4.9    -      -       -      -
     46D  ALA*     1.3    75.8    -      -       -      +
     48D  GLU*     1.3    65.1    +      -       -      +
     50D  MSE      3.2    21.4    +      -       +      +
     22E  GLN*     4.6    12.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 48 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     44D  LYS      3.0    18.6    +      -       -      +
     45D  LEU*     3.4    10.0    -      -       -      +
     47D  THR*     1.3    72.9    -      -       -      +
     49D  TYR*     1.3    60.2    +      -       -      +
     50D  MSE      2.9    16.1    +      -       -      +
     51D  SER*     3.2    20.6    +      -       -      +
     64D  LEU*     3.6    33.4    -      -       +      +
----------------------------------------------------------
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Residues in contact with TYR 49 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     45D  LEU      2.9    17.4    +      -       -      +
     46D  ALA*     3.2    11.4    +      -       -      +
     48D  GLU*     1.3    75.0    -      -       -      +
     50D  MSE      1.3    56.0    +      -       -      +
     51D  SER*     2.9    16.7    +      -       -      +
     61D  LYS*     4.5    20.2    -      -       +      +
     64D  LEU*     3.9    24.9    -      -       +      -
     65D  LEU*     4.1    27.0    -      -       +      +
     68D  ILE*     4.5     8.3    -      -       +      -
     14E  ILE*     3.6    27.6    +      -       -      +
     17E  LEU*     4.1     8.9    -      -       +      +
     18E  PRO*     3.4    45.5    -      -       +      +
     21E  LEU*     4.6     7.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with MSE 50 (chain D). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     46D  ALA      3.4     4.9    +      -       -      +
     47D  THR*     3.2    15.2    +      -       +      +
     48D  GLU      2.9     4.2    +      -       -      +
     49D  TYR*     1.3    74.4    -      -       -      +
     51D  SER*     1.3    62.2    +      -       -      +
     18E  PRO*     3.6    26.5    -      -       +      -
     19E  PHE*     3.4    40.4    -      -       +      -
     22E  GLN*     3.2    45.3    -      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il