Contacts of the helix formed by residues 57 - 101 (chain E) in PDB entry 4AFL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 57 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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55E SER 4.1 0.4 + - - -
56E LEU* 1.3 74.9 - - - +
58E SER* 1.3 66.1 + - - +
59E GLU* 2.9 21.4 + - - -
60E GLU* 2.9 36.9 + - - +
61E LYS* 2.9 22.6 + - - +
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Residues in contact with SER 58 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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100D LEU* 4.0 28.0 + - - +
103D ASP* 6.0 3.1 - - - +
56E LEU 4.1 0.4 + - - -
57E SER* 1.3 72.8 - - - +
59E GLU* 1.3 70.4 + - - +
61E LYS* 3.2 10.7 + - - +
62E LEU* 2.7 37.5 + - - +
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Residues in contact with GLU 59 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57E SER* 2.9 28.7 + - - -
58E SER* 1.3 94.7 + - - +
60E GLU* 1.3 58.2 + - + +
62E LEU* 3.6 10.4 - - - +
63E ALA* 3.1 28.9 + - - +
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Residues in contact with GLU 60 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
55E SER 4.3 3.8 - - - +
56E LEU* 3.9 8.5 - - - -
57E SER* 2.9 36.8 + - - +
59E GLU* 1.3 75.1 - - + +
61E LYS* 1.3 64.9 + - - +
63E ALA* 3.7 3.4 + - - +
64E LEU* 3.2 26.7 + - - +
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Residues in contact with LYS 61 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14D ILE* 3.8 28.1 - - - +
100D LEU* 4.6 17.6 - - + +
49E TYR* 3.3 39.4 - - + -
52E SER 6.0 0.2 - - - -
53E ALA* 3.8 18.3 + - - +
56E LEU* 3.5 30.0 + - - +
57E SER 2.9 14.9 + - - +
58E SER* 3.5 6.5 - - - +
60E GLU* 1.3 78.1 - - - +
62E LEU* 1.3 58.6 + - - +
64E LEU* 3.3 3.4 + - - +
65E LEU* 2.9 36.1 + - - +
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Residues in contact with LEU 62 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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97D ILE* 3.7 43.5 - - + +
100D LEU* 3.9 24.2 - - + +
101D ASP* 3.8 23.8 - - - +
58E SER 2.7 21.3 + - - +
59E GLU* 3.6 11.0 - - - +
60E GLU 3.3 0.2 - - - -
61E LYS* 1.3 73.6 - - - +
63E ALA* 1.3 58.0 + - - +
65E LEU* 3.3 2.4 + - - +
66E LYS* 2.9 45.2 + - - +
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Residues in contact with ALA 63 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59E GLU 3.1 14.3 + - - +
60E GLU* 4.3 4.5 - - - +
61E LYS 3.3 0.2 - - - -
62E LEU* 1.3 78.1 - - - +
64E LEU* 1.3 66.5 + - + +
66E LYS* 3.6 10.8 + - + +
67E GLN* 3.4 27.6 + - - +
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Residues in contact with LEU 64 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45E LEU* 3.4 43.3 - - + +
48E GLU* 4.0 28.7 - - + +
49E TYR* 4.2 23.3 - - + -
60E GLU 3.2 20.2 + - - +
61E LYS* 3.6 4.0 - - - +
62E LEU 3.3 0.2 - - - -
63E ALA* 1.3 77.6 - - + +
65E LEU* 1.3 63.6 + - - +
67E GLN* 3.2 18.6 + - - +
68E ILE* 3.1 20.6 + - + +
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Residues in contact with LEU 65 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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14D ILE* 4.8 1.1 - - + -
17D LEU* 3.6 33.9 - - + -
21D LEU* 4.9 3.1 - - + -
93D VAL* 3.5 15.5 - - + +
96D HIS* 4.2 12.1 - - + -
97D ILE* 3.8 15.3 - - + -
100D LEU* 3.8 24.7 - - + -
49E TYR* 4.0 26.2 - - + +
61E LYS 2.9 21.4 + - - +
62E LEU 3.7 4.0 - - - +
64E LEU* 1.3 72.8 - - - +
66E LYS* 1.3 60.1 + - - +
68E ILE* 3.3 17.2 + - + +
69E GLN* 2.9 29.8 + - - +
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Residues in contact with LYS 66 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97D ILE* 3.9 24.0 - - + -
101D ASP* 3.9 23.4 + - - -
62E LEU* 2.9 40.6 + - + +
63E ALA* 3.9 9.9 - - - +
64E LEU 3.2 0.6 - - - -
65E LEU* 1.3 76.3 - - - +
67E GLN* 1.3 58.3 + - + +
69E GLN* 3.5 5.9 + - - +
70E GLU* 3.0 29.6 + - - +
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Residues in contact with GLN 67 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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45E LEU* 3.5 35.7 - - + +
63E ALA 3.4 11.0 + - - +
64E LEU* 3.2 23.5 + - - +
65E LEU 3.2 0.6 - - - -
66E LYS* 1.3 78.5 - - + +
68E ILE* 1.3 64.5 + - - +
70E GLU* 3.5 5.6 + - - +
71E ALA* 3.1 23.6 + - - +
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Residues in contact with ILE 68 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21D LEU* 4.1 26.7 - - + -
93D VAL* 4.5 9.6 - - + -
42E ILE* 4.5 9.0 - - + +
45E LEU* 3.8 26.2 - - + +
46E ALA* 3.9 25.8 - - + +
49E TYR* 4.5 4.3 - - + -
64E LEU* 3.1 17.0 + - + +
65E LEU* 3.3 19.7 + - + +
67E GLN* 1.3 75.7 - - - +
69E GLN* 1.3 65.2 + - - +
71E ALA* 3.1 6.3 + - - +
72E TYR* 2.9 46.7 + - + -
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Residues in contact with GLN 69 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90D TYR* 3.2 51.7 + - + +
93D VAL* 3.8 13.0 - - + +
94D ASP* 2.7 44.7 + - - +
97D ILE* 3.2 19.6 - - + +
65E LEU 2.9 16.5 + - - +
66E LYS* 3.8 7.6 - - - +
68E ILE* 1.3 78.6 - - - +
70E GLU* 1.3 56.3 + - - +
72E TYR* 3.2 5.6 + - - +
73E GLY 2.8 24.9 + - - -
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Residues in contact with GLU 70 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90D TYR* 5.2 2.2 - - - -
66E LYS 3.0 17.9 + - - +
67E GLN* 4.0 6.1 - - - +
68E ILE 3.3 0.2 - - - -
69E GLN* 1.3 76.1 + - - +
71E ALA* 1.3 56.9 + - - +
73E GLY* 3.4 2.5 + - - +
74E LYS* 3.0 43.4 + - - +
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Residues in contact with ALA 71 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38E LEU* 4.1 23.1 - - + +
41E GLU* 5.3 5.4 - - + -
42E ILE* 3.6 25.6 - - + +
45E LEU* 5.0 6.3 - - + -
67E GLN 3.1 16.6 + - - +
68E ILE* 3.1 6.5 + - - +
70E GLU* 1.3 74.9 - - - +
72E TYR* 1.3 60.7 + - - +
74E LYS* 3.8 4.8 - - - +
75E CYS* 2.9 28.6 + - - +
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Residues in contact with TYR 72 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21D LEU* 4.5 7.6 + - + +
24D ASN* 4.8 1.9 - - - +
25D PHE* 4.1 25.3 + - - +
28D MSE 4.5 17.7 - - + +
86D ALA* 4.0 34.7 - - + +
89D THR* 3.5 38.6 + - + +
90D TYR* 4.3 10.5 - - + -
93D VAL* 5.6 0.4 - - + -
39E LYS* 6.3 0.9 - - + -
42E ILE* 3.4 40.4 - - + +
68E ILE* 2.9 33.7 + - + +
69E GLN* 3.7 9.2 - - - +
71E ALA* 1.3 71.7 - - - +
73E GLY* 1.3 60.2 + - - +
75E CYS* 3.5 6.5 - - + +
76E LYS* 2.8 31.8 + - - +
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Residues in contact with GLY 73 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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90D TYR* 3.6 19.5 - - - -
69E GLN 2.8 14.5 + - - -
70E GLU* 3.6 4.3 - - - -
71E ALA 3.3 0.2 - - - -
72E TYR* 1.3 72.7 - - - +
74E LYS* 1.3 63.8 + - - +
76E LYS* 3.2 10.4 + - - +
77E GLU* 3.1 28.6 + - - +
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Residues in contact with LYS 74 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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38E LEU* 3.6 31.2 - - + +
70E GLU* 3.0 31.1 + - - +
71E ALA* 3.8 3.3 - - - +
72E TYR 3.4 0.2 - - - -
73E GLY* 1.3 73.4 - - - +
75E CYS* 1.3 63.2 + - - +
77E GLU* 3.2 19.0 + - - +
78E PHE* 3.1 30.5 + - + -
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Residues in contact with CYS 75 (chain E).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28D MSE 5.1 9.0 - - - -
86D ALA* 5.0 1.8 - - + -
35E THR* 4.4 16.3 - - - +
38E LEU* 3.6 11.0 - - + +
39E LYS* 3.8 36.3 - - - -
42E ILE* 4.6 8.3 - - + -
71E ALA 2.9 18.4 + - - +
72E TYR* 3.5 13.7 - - + +
73E GLY 3.2 0.2 - - - -
74E LYS* 1.3 76.9 - - - +
76E LYS* 1.3 62.3 + - - +
78E PHE* 3.1 6.5 + - - +
79E GLY* 2.9 19.4 + - - -
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Residues in contact with LYS 76 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83D VAL* 3.7 21.9 - - + +
86D ALA* 3.7 21.2 - - + +
87D MSE 3.9 31.0 - - + +
90D TYR* 6.2 1.3 - - + -
72E TYR 2.8 20.4 + - - +
73E GLY* 3.5 9.4 - - - +
75E CYS* 1.3 73.0 - - - +
77E GLU* 1.3 67.5 + - + +
79E GLY* 3.1 3.6 + - - +
80E ASP* 2.6 50.4 + - - +
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Residues in contact with GLU 77 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73E GLY 3.1 14.0 + - - +
74E LYS* 3.4 21.6 - - - +
76E LYS* 1.3 84.2 - - + +
78E PHE* 1.3 69.2 + - + +
80E ASP* 3.1 20.6 + - - +
81E ASP* 3.1 20.3 + - - +
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Residues in contact with PHE 78 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31E LEU* 4.0 19.3 - - + +
34E ARG* 3.6 39.5 - - + -
35E THR* 3.4 21.5 - - + -
38E LEU* 3.6 24.7 - - + -
74E LYS* 3.1 24.8 + - + -
75E CYS 3.1 2.4 + - - +
77E GLU* 1.3 77.3 - - + +
79E GLY* 1.3 57.1 + - - +
81E ASP* 3.2 20.1 + - - +
82E LYS* 2.9 33.3 + - - +
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Residues in contact with GLY 79 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79D GLY* 5.0 2.3 - - - +
82D LYS* 5.9 4.7 - - - -
83D VAL* 3.4 16.6 - - - +
35E THR* 4.6 1.9 - - - +
75E CYS 2.9 13.7 + - - -
76E LYS* 3.1 5.1 + - - -
77E GLU 3.1 0.2 - - - -
78E PHE* 1.3 76.5 - - - +
80E ASP* 1.3 55.8 + - - +
82E LYS* 3.1 15.5 + - - +
83E VAL* 2.8 32.2 + - - +
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Residues in contact with ASP 80 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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83D VAL* 3.7 20.7 - - - +
76E LYS* 2.6 45.4 + - - +
77E GLU* 3.2 12.3 - - - +
79E GLY* 1.3 75.7 - - - +
81E ASP* 1.3 59.4 + - - +
83E VAL* 3.1 8.5 + - - +
84E GLN* 2.9 35.7 + - + +
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Residues in contact with ASP 81 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31E LEU* 4.0 21.3 - - + +
77E GLU* 3.1 16.3 + - - +
78E PHE* 3.4 26.2 - - - +
80E ASP* 1.3 78.0 - - - +
82E LYS* 1.3 64.1 + - - +
84E GLN* 3.2 20.0 + - - +
85E LEU* 2.9 24.3 + - - +
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Residues in contact with LYS 82 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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39D LYS* 4.9 2.7 - - - +
79D GLY* 5.9 4.7 - - - -
82D LYS* 4.4 19.8 - - + +
28E MSE 3.7 27.8 - - + +
31E LEU* 3.8 25.6 - - + -
32E ASP* 2.9 27.9 + - - +
35E THR* 2.5 45.5 + - - +
39E LYS* 4.6 4.8 - - - +
78E PHE 2.9 14.8 + - - +
79E GLY* 3.4 13.7 - - - +
81E ASP* 1.3 75.3 - - - +
83E VAL* 1.3 58.0 + - + +
85E LEU* 3.4 1.2 + - - -
86E ALA* 2.9 30.7 + - - +
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Residues in contact with VAL 83 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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76D LYS* 3.9 18.1 - - + +
79D GLY* 3.7 34.3 - - - +
80D ASP* 3.7 20.6 - - - +
83D VAL* 4.2 7.6 - - + -
79E GLY 2.8 18.1 + - - +
80E ASP* 3.1 10.3 + - - +
82E LYS* 1.3 75.5 - - - +
84E GLN* 1.3 58.3 + - + +
86E ALA* 3.2 7.2 + - - +
87E MSE 2.9 41.7 + - - +
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Residues in contact with GLN 84 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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98B ARG* 5.6 8.5 - - - +
80E ASP* 2.9 17.6 + - + +
81E ASP* 3.5 22.7 - - - +
83E VAL* 1.3 78.3 - - + +
85E LEU* 1.3 64.1 + - - +
87E MSE 3.3 9.5 + - - +
88E GLN* 2.9 26.2 + - - +
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Residues in contact with LEU 85 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72D TYR* 6.3 0.2 - - + -
24E ASN* 3.5 43.1 - - + +
27E LEU* 3.7 17.9 - - + -
28E MSE 3.5 46.2 - - + +
31E LEU* 4.2 11.0 - - + -
81E ASP 2.9 16.1 + - - +
82E LYS* 3.7 5.4 - - - +
84E GLN* 1.3 76.6 - - - +
86E ALA* 1.3 62.7 + - - +
88E GLN* 3.3 13.5 + - - +
89E THR* 2.8 30.3 + - - +
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Residues in contact with ALA 86 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72D TYR* 4.2 21.1 - - + +
75D CYS* 4.8 3.8 - - - -
76D LYS* 3.7 31.4 - - + +
28E MSE 4.0 11.2 - - + +
82E LYS 2.9 17.9 + - - +
83E VAL* 3.5 4.5 - - - +
85E LEU* 1.3 77.8 - - - +
87E MSE 1.3 57.4 + - - +
89E THR* 3.2 2.8 + - - -
90E TYR* 2.8 30.6 + - - +
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Residues in contact with MSE 87 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98B ARG* 3.8 29.6 - - - +
76D LYS* 3.6 38.1 - - + +
83E VAL* 2.9 32.6 + - - +
84E GLN* 3.8 8.7 - - - +
86E ALA* 1.3 74.8 - - - +
88E GLN* 1.3 55.6 + - - +
90E TYR* 3.1 8.7 + - - +
91E GLU* 2.7 39.2 + - - +
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Residues in contact with GLN 88 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11E LEU* 4.9 12.7 - - - +
20E GLU* 5.1 4.4 + - - +
24E ASN* 3.4 29.4 + - - +
27E LEU* 6.1 0.4 - - - +
84E GLN 2.9 17.8 + - - +
85E LEU* 3.5 12.7 - - - +
87E MSE 1.3 79.1 - - - +
89E THR* 1.3 56.4 + - - +
91E GLU* 3.8 4.8 - - - +
92E MSE 3.0 39.8 + - - +
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Residues in contact with THR 89 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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72D TYR* 3.7 34.1 - - + +
21E LEU* 3.5 31.2 - - + -
24E ASN* 2.7 34.7 + - + +
85E LEU* 2.8 15.9 + - - +
86E ALA 3.7 3.6 - - - -
88E GLN* 1.3 73.6 - - - +
90E TYR* 1.3 67.2 + - - +
92E MSE 3.1 7.2 + - + +
93E VAL* 2.9 29.7 + - + +
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Residues in contact with TYR 90 (chain E).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69D GLN* 3.4 58.3 + - + +
70D GLU* 5.3 0.4 - - - -
72D TYR* 4.3 11.1 - - + +
73D GLY* 3.4 24.0 - - - +
76D LYS* 6.0 2.2 - - + -
86E ALA 2.8 18.6 + - - +
87E MSE 3.5 8.3 - - - +
89E THR* 1.3 77.7 - - - +
91E GLU* 1.3 57.4 + - + +
93E VAL* 3.3 5.0 + - - +
94E ASP* 2.8 53.4 + - + +
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Residues in contact with GLU 91 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87E MSE 2.7 21.4 + - - +
88E GLN* 3.8 6.3 - - - +
90E TYR* 1.3 79.0 - - + +
92E MSE 1.3 61.4 + - - +
94E ASP* 3.6 6.5 - - - +
95E LYS* 3.0 27.7 + - - +
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Residues in contact with MSE 92 (chain E).
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----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
11E LEU* 3.8 30.3 - - - +
12E ASP* 5.9 2.2 - - - +
17E LEU* 3.5 27.4 - - + -
20E GLU* 3.6 41.7 - - + -
21E LEU* 4.1 6.7 - - + -
24E ASN* 4.0 19.1 - - - +
88E GLN* 3.0 26.8 + - - +
89E THR* 3.5 19.5 - - + +
91E GLU* 1.3 79.9 - - - +
93E VAL* 1.3 62.1 + - - +
95E LYS* 3.5 10.9 + - - +
96E HIS* 3.3 17.5 + - + -
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Residues in contact with VAL 93 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65D LEU* 3.5 39.0 - - + +
68D ILE* 4.2 12.1 - - + -
69D GLN* 3.8 18.4 - - + +
72D TYR* 5.5 0.9 - - + -
17E LEU* 4.0 17.3 - - + -
21E LEU* 3.9 27.1 - - + -
89E THR* 2.9 21.6 + - + +
90E TYR* 3.8 3.4 - - - +
92E MSE 1.3 75.5 - - - +
94E ASP* 1.3 61.9 + - - +
96E HIS* 3.4 9.5 + - - +
97E ILE* 3.2 21.6 + - + +
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Residues in contact with ASP 94 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69D GLN* 2.4 36.3 + - - +
90E TYR* 2.8 32.2 + - + +
91E GLU* 3.6 9.0 - - - +
92E MSE 3.1 0.2 - - - -
93E VAL* 1.3 76.8 - - - +
95E LYS* 1.3 55.5 + - - +
97E ILE* 3.1 8.2 + - - +
98E ARG* 2.7 66.2 + - - +
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Residues in contact with LYS 95 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
87B MSE 6.2 4.0 - - + -
12E ASP* 5.4 12.6 - - - +
91E GLU 3.0 16.9 + - - +
92E MSE 3.7 7.9 - - - +
93E VAL 3.4 0.2 - - - -
94E ASP* 1.3 74.8 - - - +
96E HIS* 1.3 61.2 + - + +
98E ARG* 3.5 8.9 + - - +
99E ARG* 2.9 30.0 + - - +
----------------------------------------------------------
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Residues in contact with HIS 96 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65D LEU* 4.4 10.8 - - + -
11E LEU 4.5 5.5 + - - -
12E ASP* 3.0 34.0 + - - -
13E SER 4.2 1.8 + - - -
14E ILE* 3.5 43.4 + - + +
17E LEU* 4.0 18.6 - - + +
92E MSE 3.3 22.8 + - - -
93E VAL* 3.4 6.2 + - - +
94E ASP 3.2 0.6 - - - -
95E LYS* 1.3 76.9 - - + +
97E ILE* 1.3 60.8 + - - +
99E ARG* 3.0 33.9 + - - +
100E LEU* 2.9 37.4 + - + +
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Residues in contact with ILE 97 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62D LEU* 4.2 13.2 - - + +
65D LEU* 3.4 35.9 - - + +
66D LYS* 3.6 18.4 - - + +
69D GLN* 3.4 41.7 - - + +
93E VAL* 3.2 10.5 + - + +
94E ASP* 3.1 14.9 + - - +
96E HIS* 1.3 74.8 - - - +
98E ARG* 1.3 55.8 + - + +
100E LEU* 3.2 2.4 + - - +
101E ASP* 2.7 55.4 + - - +
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Residues in contact with ARG 98 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B VAL* 3.3 21.8 - - - +
87B MSE 4.1 13.0 - - - -
94E ASP* 2.7 48.5 + - - +
95E LYS* 3.8 7.6 - - - +
97E ILE* 1.3 73.2 - - + +
99E ARG* 1.3 59.6 + - - +
101E ASP* 3.6 5.2 + - - -
102E THR* 2.9 34.8 + - + +
76F LYS* 3.2 20.9 - - - +
80F ASP* 2.6 46.0 + - - -
----------------------------------------------------------
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Residues in contact with ARG 99 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14E ILE* 4.1 18.3 - - - +
95E LYS 2.9 17.1 + - - +
96E HIS* 3.0 41.6 + - - +
98E ARG* 1.3 76.6 - - - +
100E LEU* 1.3 90.7 + - - +
102E THR* 3.2 15.5 + - - -
103E ASP* 3.3 13.5 + - + +
----------------------------------------------------------
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Residues in contact with LEU 100 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
61D LYS* 6.2 1.3 - - + -
62D LEU* 3.9 38.4 - - + +
65D LEU* 4.0 19.3 - - + -
14E ILE* 6.1 0.9 - - + -
96E HIS* 2.9 21.2 + - + +
97E ILE 3.7 2.7 - - - +
99E ARG* 1.3 108.6 - - + +
101E ASP* 1.3 61.5 + - - +
102E THR 3.3 1.0 + - - -
103E ASP* 3.6 19.6 + - + +
----------------------------------------------------------
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Residues in contact with ASP 101 (chain E).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62D LEU* 3.8 21.1 - - - +
66D LYS* 5.4 2.8 - - - +
97E ILE* 2.7 38.1 + - + +
98E ARG* 4.1 6.1 - - - +
99E ARG 3.2 0.4 - - - -
100E LEU* 1.3 72.7 - - - +
102E THR* 1.3 58.5 + - + +
103E ASP 3.7 0.7 - - - -
84F GLN* 3.3 29.3 + - - +
87F MSE 3.3 13.4 - - - +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il