Contacts of the helix formed by residues 57 - 103 (chain F) in PDB entry 4AFL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with SER 57 (chain F).
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56F LEU* 1.3 75.2 - - - +
58F SER* 1.3 66.0 + - - +
59F GLU* 3.9 8.0 + - - +
60F GLU* 3.1 36.8 + - - +
61F LYS* 2.9 28.3 + - - +
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Residues in contact with SER 58 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
100B LEU* 4.9 15.8 - - - +
57F SER* 1.3 73.1 + - - +
59F GLU* 1.3 69.8 + - - +
61F LYS* 3.4 13.7 - - - +
62F LEU* 3.2 26.0 + - - +
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Residues in contact with GLU 59 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
57F SER* 4.1 6.7 + - - +
58F SER* 1.3 85.0 + - - +
60F GLU* 1.3 63.3 + - + +
62F LEU* 3.4 7.8 + - + +
63F ALA* 2.9 30.7 + - - +
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Residues in contact with GLU 60 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
56F LEU 3.8 6.2 - - - +
57F SER* 3.1 30.9 + - - +
59F GLU* 1.3 78.8 - - + +
61F LYS* 1.3 61.6 + - - +
63F ALA* 3.4 6.4 + - - +
64F LEU* 3.0 30.4 + - - +
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Residues in contact with LYS 61 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14B ILE* 4.6 15.2 - - - +
100B LEU* 5.0 14.2 - - + +
49F TYR* 3.7 35.7 + - + -
56F LEU* 5.1 6.9 - - - +
57F SER 2.9 26.7 + - - +
58F SER* 3.4 18.4 - - - +
60F GLU* 1.3 75.3 - - - +
62F LEU* 1.3 62.2 + - - +
64F LEU* 3.0 10.4 + - - +
65F LEU* 2.9 34.3 + - - +
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Residues in contact with LEU 62 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B ILE* 4.1 22.0 - - + +
100B LEU* 3.9 33.2 - - + +
101B ASP* 3.1 25.8 - - - +
58F SER 3.2 21.7 + - - +
59F GLU* 3.7 7.0 - - - +
61F LYS* 1.3 78.1 - - - +
63F ALA* 1.3 62.9 + - - +
65F LEU* 3.1 8.9 + - + +
66F LYS* 3.0 46.8 + - - +
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Residues in contact with ALA 63 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
59F GLU 2.9 18.8 + - - +
60F GLU* 3.8 7.0 - - - +
62F LEU* 1.3 77.1 - - - +
64F LEU* 1.3 60.0 + - - +
66F LYS* 3.4 12.2 + - - +
67F GLN* 3.2 31.7 + - - +
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Residues in contact with LEU 64 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45F LEU* 3.9 28.9 - - + +
48F GLU* 3.6 33.4 - - + +
49F TYR* 3.5 41.7 - - + +
52F SER* 6.0 2.0 - - - -
60F GLU 3.0 16.8 + - - +
61F LYS* 3.0 11.4 + - - +
63F ALA* 1.3 75.4 - - - +
65F LEU* 1.3 59.0 + - - +
67F GLN* 3.3 19.6 + - - +
68F ILE* 3.0 34.7 + - + +
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Residues in contact with LEU 65 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
14B ILE* 5.4 1.3 - - + -
17B LEU* 3.6 29.6 - - + -
21B LEU* 4.9 2.2 - - + -
93B VAL* 3.6 12.6 - - + +
96B HIS* 4.5 13.2 - - + -
97B ILE* 3.6 17.4 - - + +
100B LEU* 4.1 25.8 - - + -
49F TYR* 3.6 30.3 - - + +
61F LYS* 2.9 19.4 + - + +
62F LEU* 3.5 6.7 - - - +
64F LEU* 1.3 74.3 - - - +
66F LYS* 1.3 54.5 + - - +
68F ILE* 3.1 15.2 + - + +
69F GLN* 2.8 36.4 + - - +
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Residues in contact with LYS 66 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97B ILE* 3.7 26.0 - - + -
101B ASP* 4.1 18.8 + - - -
62F LEU* 3.0 41.9 + - + +
63F ALA* 3.7 13.0 - - - +
64F LEU 3.3 0.2 - - - -
65F LEU* 1.3 76.6 - - - +
67F GLN* 1.3 57.7 + - + +
69F GLN* 3.4 5.9 + - - +
70F GLU* 3.0 31.2 + - - +
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Residues in contact with GLN 67 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
45F LEU* 3.5 32.2 - - + +
63F ALA* 3.2 20.3 + - - +
64F LEU* 3.7 19.7 - - - +
65F LEU 3.2 0.4 - - - -
66F LYS* 1.3 74.0 - - + +
68F ILE* 1.3 67.3 + - - +
70F GLU* 3.3 10.8 + - - +
71F ALA* 3.0 25.3 + - - +
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Residues in contact with ILE 68 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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21B LEU* 4.1 28.5 - - + -
93B VAL* 4.7 6.3 - - + -
42F ILE* 4.7 9.2 - - + -
45F LEU* 3.6 26.0 - - + +
46F ALA* 4.0 26.7 - - + +
49F TYR* 4.4 8.1 - - + -
64F LEU 3.0 21.1 + - - +
65F LEU* 3.5 13.5 - - + +
67F GLN* 1.3 76.3 - - - +
69F GLN* 1.3 63.5 + - - +
71F ALA* 3.3 3.8 + - - +
72F TYR* 3.0 46.2 + - + -
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Residues in contact with GLN 69 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B TYR* 3.4 46.2 + - + +
93B VAL* 4.0 10.3 - - + +
94B ASP* 3.0 34.0 + - - +
97B ILE* 3.3 28.3 - - + +
65F LEU 2.8 18.9 + - - +
66F LYS* 3.7 7.7 + - - +
68F ILE* 1.3 75.7 - - - +
70F GLU* 1.3 56.8 + - - +
72F TYR* 3.1 6.1 + - - -
73F GLY 2.8 26.0 + - - -
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Residues in contact with GLU 70 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B TYR* 5.3 2.5 - - - -
66F LYS 3.0 18.6 + - - +
67F GLN* 3.7 10.9 - - - +
69F GLN* 1.3 76.8 - - - +
71F ALA* 1.3 64.1 + - - +
73F GLY* 3.3 2.7 + - - +
74F LYS* 3.0 50.6 + - + +
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Residues in contact with ALA 71 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38F LEU* 4.1 21.5 - - + +
41F GLU* 5.1 6.5 - - - +
42F ILE* 3.5 28.8 - - + +
45F LEU* 4.8 6.3 - - + -
67F GLN 3.0 16.9 + - - +
68F ILE* 3.5 2.5 - - - +
70F GLU* 1.3 75.3 - - - +
72F TYR* 1.3 59.2 + - - +
74F LYS* 3.3 6.1 + - - +
75F CYS* 2.9 28.9 + - - +
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Residues in contact with TYR 72 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
21B LEU* 4.7 6.7 + - + +
24B ASN* 4.6 4.2 - - + +
25B PHE* 4.5 20.4 + - - +
28B MSE 4.7 15.0 - - + +
85B LEU* 6.1 0.2 - - + -
86B ALA* 4.1 32.9 - - + +
89B THR* 3.5 39.5 + - + +
90B TYR* 4.3 10.8 - - + -
93B VAL* 5.4 0.9 - - + -
42F ILE* 3.6 41.3 - - + +
68F ILE* 3.0 33.8 + - + +
69F GLN* 3.1 9.2 + - - +
71F ALA* 1.3 75.2 - - - +
73F GLY* 1.3 59.6 + - - +
75F CYS* 3.6 6.0 - - + +
76F LYS* 2.8 32.7 + - - +
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Residues in contact with GLY 73 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90B TYR* 3.5 23.6 - - - -
69F GLN 2.8 15.3 + - - -
70F GLU 3.6 3.4 - - - -
72F TYR* 1.3 71.8 - - - +
74F LYS* 1.3 56.5 + - - +
76F LYS* 3.4 8.6 + - - +
77F GLU* 3.0 35.8 + - - +
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Residues in contact with LYS 74 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38F LEU* 3.8 24.5 - - + -
70F GLU* 3.0 40.6 + - + +
71F ALA* 3.6 7.6 - - - +
73F GLY* 1.3 74.6 - - - +
75F CYS* 1.3 59.5 + - - +
77F GLU* 3.3 16.8 + - - +
78F PHE* 3.0 41.2 + - + -
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Residues in contact with CYS 75 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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28B MSE 5.2 9.4 - - - -
86B ALA* 4.7 2.2 - - + -
35F THR* 4.1 18.3 - - - +
38F LEU* 3.6 13.9 - - + +
39F LYS* 3.9 35.2 - - - -
42F ILE* 4.7 7.0 - - + -
71F ALA 2.9 16.9 + - - +
72F TYR* 3.6 12.6 - - + +
74F LYS* 1.3 74.2 - - - +
76F LYS* 1.3 59.1 + - - +
78F PHE* 3.2 5.9 + - - +
79F GLY* 2.8 26.5 + - - -
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Residues in contact with LYS 76 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B VAL* 4.1 9.1 - - + +
86B ALA* 3.7 23.3 - - + +
87B MSE 3.5 35.0 - - + +
90B TYR* 6.0 2.0 - - + -
98E ARG* 3.2 25.4 - - - +
72F TYR 2.8 20.2 + - - +
73F GLY* 3.6 10.1 - - - +
75F CYS* 1.3 73.1 - - - +
77F GLU* 1.3 64.9 + - + +
79F GLY* 3.1 3.3 + - - -
80F ASP* 2.9 48.9 + - - +
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Residues in contact with GLU 77 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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73F GLY 3.0 18.2 + - - +
74F LYS* 3.6 20.0 - - - +
75F CYS 3.2 0.4 - - - -
76F LYS* 1.3 87.2 - - + +
78F PHE* 1.3 64.3 + - + +
80F ASP* 3.3 12.1 + - - +
81F ASP* 3.1 27.7 + - - +
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Residues in contact with PHE 78 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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31F LEU* 3.9 18.3 - - + +
34F ARG* 3.7 55.0 - - + -
35F THR* 3.5 20.0 - - + -
38F LEU* 3.6 25.8 - - + -
74F LYS* 3.0 32.7 + - + -
75F CYS 3.2 2.0 + - - +
77F GLU* 1.3 74.4 - - + +
79F GLY* 1.3 66.4 + - - +
81F ASP* 3.1 20.0 + - - +
82F LYS* 2.9 28.4 + - - +
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Residues in contact with GLY 79 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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79B GLY* 5.3 2.1 - - - -
82B LYS* 5.9 4.0 - - - -
83B VAL* 3.4 17.3 - - - -
75F CYS 2.8 14.5 + - - -
76F LYS* 3.1 4.9 + - - -
78F PHE* 1.3 77.6 - - - +
80F ASP* 1.3 61.4 + - - +
82F LYS* 3.0 18.0 + - - +
83F VAL* 3.0 25.3 + - - +
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Residues in contact with ASP 80 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
83B VAL* 3.6 10.4 - - - +
98E ARG* 2.6 47.6 + - - -
76F LYS* 2.9 29.2 + - - +
77F GLU* 3.3 12.6 - - - +
79F GLY* 1.3 74.6 - - - +
81F ASP* 1.3 65.1 + - - +
83F VAL* 3.2 7.6 + - - +
84F GLN* 3.0 29.5 + - + +
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Residues in contact with ASP 81 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31F LEU* 3.7 22.0 - - + +
77F GLU* 3.1 17.1 + - - +
78F PHE* 3.1 27.0 + - - +
80F ASP* 1.3 76.0 - - - +
82F LYS* 1.3 58.5 + - - +
84F GLN* 3.2 9.6 + - - +
85F LEU* 2.9 28.8 + - - +
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Residues in contact with LYS 82 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
39B LYS* 4.6 4.6 - - - +
79B GLY* 5.8 4.9 - - - -
82B LYS* 4.9 15.4 - - + +
28F MSE 3.6 26.6 - - - +
31F LEU* 3.8 20.4 - - + -
32F ASP* 2.5 32.1 + - - +
35F THR* 2.7 44.2 + - - +
39F LYS* 4.9 6.4 - - - +
78F PHE 2.9 15.5 + - - +
79F GLY* 3.0 14.5 + - - +
81F ASP* 1.3 77.0 - - - +
83F VAL* 1.3 56.4 + - + +
85F LEU* 3.3 2.6 + - - +
86F ALA* 2.9 29.6 + - - +
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Residues in contact with VAL 83 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B LYS* 3.7 21.3 - - + +
79B GLY* 3.5 37.5 - - - +
80B ASP* 3.5 11.9 - - - +
83B VAL* 4.3 5.8 - - + -
102E THR* 3.7 29.6 - - + -
79F GLY 3.0 13.6 + - - +
80F ASP* 3.6 9.4 - - - +
82F LYS* 1.3 72.4 - - - +
84F GLN* 1.3 66.5 + - - +
86F ALA* 3.4 6.7 + - - +
87F MSE 3.0 32.6 + - - +
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Residues in contact with GLN 84 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101E ASP* 3.3 34.8 + - - +
102E THR* 4.0 11.1 - - - +
80F ASP* 3.0 18.9 + - + +
81F ASP* 3.6 11.4 - - - +
83F VAL* 1.3 76.4 - - - +
85F LEU* 1.3 58.3 + - - +
87F MSE 3.4 14.8 + - - +
88F GLN* 2.9 32.3 + - - +
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Residues in contact with LEU 85 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B TYR* 6.1 0.4 - - + -
24F ASN* 3.6 38.6 - - + +
27F LEU* 3.6 21.5 - - + -
28F MSE 3.4 47.1 - - + +
31F LEU* 4.1 10.1 - - + -
81F ASP 2.9 16.1 + - - +
82F LYS 3.6 5.2 - - - +
83F VAL 3.2 0.2 - - - -
84F GLN* 1.3 74.3 - - - +
86F ALA* 1.3 65.4 + - - +
88F GLN* 3.3 16.0 + - - +
89F THR* 2.9 29.3 + - - +
----------------------------------------------------------
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Residues in contact with ALA 86 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B TYR* 3.9 29.8 - - + +
75B CYS* 4.8 3.4 - - + -
76B LYS* 3.8 31.2 - - + +
28F MSE 4.0 6.8 - - + +
82F LYS 2.9 17.8 + - - +
83F VAL 3.7 4.5 - - - +
85F LEU* 1.3 77.1 - - - +
87F MSE 1.3 58.2 + - - +
89F THR* 3.3 2.6 + - - -
90F TYR* 2.8 29.0 + - - +
----------------------------------------------------------
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Residues in contact with MSE 87 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
76B LYS* 3.6 24.5 - - + -
101E ASP 3.3 28.3 - - - +
102E THR* 3.6 14.4 - - - -
103E ASP 3.7 23.6 - - - +
104E LEU 3.9 10.8 - - - +
83F VAL* 3.0 20.1 + - - +
84F GLN* 3.6 19.7 - - - +
86F ALA* 1.3 78.3 - - - +
88F GLN* 1.3 53.1 + - - +
90F TYR* 3.1 8.2 + - - +
91F GLU* 2.7 60.7 + - - +
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Residues in contact with GLN 88 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
23A ARG* 4.8 9.6 + - - -
20F GLU* 5.4 0.7 - - - +
24F ASN* 3.5 28.0 + - - +
27F LEU* 5.0 2.8 - - - +
84F GLN* 2.9 20.1 + - - +
85F LEU* 3.7 14.8 - - - +
87F MSE 1.3 76.3 - - - +
89F THR* 1.3 58.1 + - - +
91F GLU* 3.8 10.7 - - - +
92F MSE 2.9 32.8 + - + +
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Residues in contact with THR 89 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
72B TYR* 3.4 43.5 - - + -
21F LEU* 4.0 20.0 - - + -
24F ASN* 2.6 36.0 + - + +
85F LEU* 2.9 16.4 + - - +
86F ALA 3.5 4.0 - - - -
88F GLN* 1.3 74.2 - - - +
90F TYR* 1.3 66.1 + - - +
92F MSE 3.8 6.0 - - + +
93F VAL* 3.0 32.8 + - + +
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Residues in contact with TYR 90 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B GLN* 3.3 61.2 + - + +
70B GLU* 5.0 2.2 - - - -
72B TYR* 4.7 8.2 - - + +
73B GLY* 3.8 20.4 - - - +
76B LYS* 6.4 0.7 - - + -
104E LEU* 4.0 34.1 - - + +
86F ALA 2.8 14.8 + - - +
87F MSE 3.3 12.3 - - - +
89F THR* 1.3 76.7 - - - +
91F GLU* 1.3 66.1 + - + +
93F VAL* 3.8 2.7 - - - +
94F ASP* 2.9 35.0 + - + +
----------------------------------------------------------
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Residues in contact with GLU 91 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
103E ASP 5.2 1.6 - - - +
104E LEU* 5.2 4.8 - - - +
87F MSE 2.7 49.8 + - - +
88F GLN* 3.8 8.1 - - - +
90F TYR* 1.3 82.9 - - + +
92F MSE 1.3 61.6 + - - +
94F ASP* 3.2 9.7 + - + +
95F LYS* 3.1 26.8 + - - +
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Residues in contact with MSE 92 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12F ASP* 5.8 4.9 - - + +
17F LEU* 4.1 18.4 - - + -
20F GLU* 3.7 37.5 - - + +
21F LEU* 4.3 18.2 - - + +
24F ASN* 3.8 25.4 - - - +
88F GLN* 2.9 24.6 + - + +
89F THR* 3.8 10.1 - - + +
90F TYR 3.3 0.2 - - - -
91F GLU* 1.3 69.8 - - - +
93F VAL* 1.3 67.0 + - - +
95F LYS* 3.2 15.1 + - - +
96F HIS* 3.1 34.6 + - + +
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Residues in contact with VAL 93 (chain F).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B LEU* 3.6 39.3 - - + +
68B ILE* 4.4 11.2 - - + -
69B GLN* 3.9 10.8 - - + +
72B TYR* 5.8 0.2 - - + -
17F LEU* 4.8 6.3 - - + -
21F LEU* 4.2 24.7 - - + -
89F THR* 3.0 24.4 + - + +
90F TYR* 3.8 3.6 - - - +
92F MSE 1.3 79.0 - - + +
94F ASP* 1.3 58.9 + - - +
96F HIS* 3.0 11.0 + - - +
97F ILE* 2.8 38.9 + - + +
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Residues in contact with ASP 94 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
69B GLN* 3.1 26.3 + - - +
90F TYR* 2.9 17.3 + - + +
91F GLU* 3.2 16.3 - - + +
92F MSE 3.2 0.2 - - - -
93F VAL* 1.3 77.3 - - - +
95F LYS* 1.3 62.9 + - - +
97F ILE* 3.3 8.8 + - - +
98F ARG* 3.0 49.8 + - - +
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Residues in contact with LYS 95 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
12F ASP* 4.9 17.5 - - + -
91F GLU 3.1 16.1 + - - +
92F MSE 3.5 10.3 - - - +
93F VAL 3.1 0.4 - - - -
94F ASP* 1.3 79.7 - - - +
96F HIS* 1.3 58.9 + - + +
98F ARG* 3.3 11.5 + - - +
99F ARG* 3.0 25.8 + - - +
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Residues in contact with HIS 96 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
65B LEU* 4.2 14.1 - - + +
12F ASP* 3.3 35.9 + - + -
13F SER 3.6 13.1 + - - -
14F ILE* 3.5 36.9 - - + +
17F LEU* 3.7 33.4 - - + +
92F MSE 3.1 30.6 + - + -
93F VAL* 3.0 6.3 + - - +
95F LYS* 1.3 72.8 - - - +
97F ILE* 1.3 60.1 - - - +
99F ARG* 3.3 9.5 + - + +
100F LEU* 2.9 29.1 + - - +
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Residues in contact with ILE 97 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 3.8 17.9 - - + +
65B LEU* 3.8 21.1 - - + +
66B LYS* 4.0 28.0 - - + +
69B GLN* 3.2 37.7 - - - +
93F VAL* 2.8 26.2 + - + +
94F ASP* 3.5 10.1 - - - +
96F HIS* 1.3 76.7 - - - +
98F ARG* 1.3 61.3 + - + +
100F LEU* 3.0 9.9 + - - +
101F ASP* 2.8 40.4 + - - +
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Residues in contact with ARG 98 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94F ASP* 3.0 39.8 + - - +
95F LYS* 3.6 11.2 - - - +
97F ILE* 1.3 77.8 - - + +
99F ARG* 1.3 60.9 + - - +
101F ASP* 3.3 14.6 + - - +
102F THR* 3.1 25.7 + - - -
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Residues in contact with ARG 99 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
95F LYS 3.0 13.7 + - - +
96F HIS* 3.7 11.9 - - + +
97F ILE 3.3 0.2 - - - -
98F ARG* 1.3 72.5 - - - +
100F LEU* 1.3 66.2 + - - +
102F THR* 3.4 11.9 - - - -
103F ASP* 3.1 20.8 - - - +
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Residues in contact with LEU 100 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B SER* 5.1 16.3 - - - +
61B LYS* 6.1 2.2 - - + -
62B LEU* 4.4 25.6 - - + +
65B LEU* 5.7 3.6 - - + -
96F HIS 2.9 14.2 + - - +
97F ILE* 3.0 12.5 + - - +
99F ARG* 1.3 75.9 - - - +
101F ASP* 1.3 52.9 + - - +
103F ASP* 2.8 41.3 + - - +
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Residues in contact with ASP 101 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
62B LEU* 3.4 26.3 - - - +
66B LYS* 5.1 4.8 + - - -
97F ILE* 2.8 31.9 + - - +
98F ARG* 3.4 15.8 - - - +
100F LEU* 1.3 72.5 - - - +
102F THR* 1.3 63.3 + - - +
103F ASP 3.2 9.1 + - - +
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Residues in contact with THR 102 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
98F ARG 3.1 11.9 + - - -
99F ARG* 3.4 14.6 - - - -
100F LEU 3.0 0.2 + - - -
101F ASP* 1.3 79.7 - - - +
103F ASP* 1.3 64.5 + - - +
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Residues in contact with ASP 103 (chain F).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
58B SER* 4.6 18.5 + - - +
99F ARG 3.1 17.9 - - - +
100F LEU* 2.8 22.1 + - - +
101F ASP* 3.3 8.2 - - - +
102F THR* 1.3 84.0 - - - +
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il