Contacts of the helix formed by residues 148 - 209 (chain A) in PDB entry 4CKG
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ARG 148 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144A VAL* 4.0 7.8 - - + +
145A PRO* 2.9 34.1 + - - +
147A ARG* 1.3 96.8 - - + +
149A ALA* 1.4 56.0 + - - +
150A GLN 3.5 3.1 - - - -
151A GLU* 2.7 50.0 + - + +
152A ALA* 3.1 26.4 + - - +
103C HIS* 6.0 1.8 + - - -
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Residues in contact with ALA 149 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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146A ARG 4.0 9.0 + - - +
147A ARG 3.1 9.3 + - - +
148A ARG* 1.4 71.9 - - - +
150A GLN* 1.3 69.3 + - + +
152A ALA* 3.5 7.2 + - - +
153A GLU* 3.0 26.7 + - - +
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Residues in contact with GLN 150 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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148A ARG 3.5 1.2 + - - -
149A ALA* 1.3 82.0 - - + +
151A GLU* 1.4 59.3 + - + +
153A GLU* 3.4 6.9 + - - +
154A GLU* 3.1 29.5 + - - +
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Residues in contact with GLU 151 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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144A VAL* 4.6 6.7 - - + -
148A ARG* 2.7 63.5 + - + +
150A GLN* 1.4 73.8 - - + +
152A ALA* 1.4 60.0 + - - +
154A GLU* 3.4 18.9 - - - +
155A ALA* 2.9 27.0 + - - +
103C HIS* 4.6 20.0 + - + +
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Residues in contact with ALA 152 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A ASN* 4.5 0.9 - - - +
144A VAL* 3.7 33.5 - - + +
145A PRO 5.0 1.6 - - - +
146A ARG* 6.1 0.4 - - - -
148A ARG 3.1 17.2 + - - +
149A ALA* 3.6 9.9 - - - +
151A GLU* 1.4 74.4 - - - +
153A GLU* 1.4 58.5 + - - +
155A ALA* 3.2 5.2 + - - +
156A GLY* 2.9 26.0 + - - -
326B ARG* 3.7 25.5 + - - +
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Residues in contact with GLU 153 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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149A ALA 3.0 19.7 + - - +
150A GLN* 3.4 8.7 + - - +
152A ALA* 1.4 74.1 - - - +
154A GLU* 1.3 56.7 + - - +
156A GLY* 3.4 2.3 + - - -
157A ALA* 3.0 28.8 + - - +
326B ARG* 5.5 0.7 - - - +
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Residues in contact with GLU 154 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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150A GLN 3.1 14.5 + - - +
151A GLU* 3.4 24.7 - - - +
153A GLU* 1.3 71.5 - - - +
155A ALA* 1.3 66.2 + - - +
157A ALA* 3.2 21.2 - - - +
158A ALA* 3.2 9.2 + - - +
103C HIS* 5.1 5.0 - - - -
107C GLN* 2.7 35.6 + - - +
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Residues in contact with ALA 155 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A ALA* 4.9 4.5 - - - +
140A HIS* 3.9 32.2 - - + +
141A ASN* 4.6 4.5 - - - +
144A VAL* 5.7 1.1 - - + -
151A GLU 2.9 14.8 + - - +
152A ALA* 3.2 11.2 + - - +
154A GLU* 1.3 79.6 - - - +
156A GLY* 1.4 55.6 + - - +
158A ALA* 3.4 10.1 + - - +
159A LEU* 3.1 23.6 + - - +
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Residues in contact with GLY 156 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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141A ASN* 3.6 19.8 + - - -
152A ALA 2.9 16.5 + - - -
153A GLU* 3.4 4.0 + - - -
155A ALA* 1.4 69.8 - - - +
157A ALA* 1.4 57.7 + - - +
159A LEU* 3.4 8.0 + - - +
160A ARG* 2.9 35.5 + - - +
326B ARG* 5.7 0.7 - - - -
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Residues in contact with ALA 157 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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153A GLU 3.0 13.7 + - - +
154A GLU* 3.2 16.2 - - - +
156A GLY* 1.4 71.0 - - - +
158A ALA* 1.4 62.0 + - - +
160A ARG* 3.1 13.3 + - - +
161A THR* 3.1 23.2 + - - -
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Residues in contact with ALA 158 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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137A ALA* 4.6 5.3 - - + +
154A GLU 3.2 8.2 + - - +
155A ALA* 3.5 11.9 - - - +
157A ALA* 1.4 78.2 - - - +
159A LEU* 1.4 54.9 + - - +
161A THR* 3.2 11.7 + - - -
162A ALA* 2.8 28.5 + - - +
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Residues in contact with LEU 159 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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134A LEU* 3.8 25.4 - - + -
137A ALA* 4.0 23.8 - - + +
138A LEU* 4.1 17.5 - - + -
141A ASN* 3.5 33.2 - - + +
155A ALA 3.1 13.5 + - - +
156A GLY* 3.4 11.4 - - - +
157A ALA 3.4 0.2 - - - -
158A ALA* 1.4 69.4 - - - +
160A ARG* 1.3 67.2 + - - +
162A ALA* 4.2 2.9 - - - -
163A ARG* 2.9 29.6 + - - +
254B GLU* 4.0 28.0 - - + +
343B ASP* 5.0 2.5 - - + +
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Residues in contact with ARG 160 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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156A GLY 2.9 22.1 + - - +
157A ALA* 3.1 12.5 + - - +
159A LEU* 1.3 81.9 - - - +
161A THR* 1.3 57.7 + - - +
164A ALA* 3.1 30.0 + - - +
252B GLY* 3.4 22.9 + - - +
253B GLU* 2.6 52.3 + - - +
254B GLU* 3.8 13.1 + - - +
344B SER* 5.6 6.6 - - - -
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Residues in contact with THR 161 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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157A ALA 3.1 14.1 + - - -
158A ALA* 3.2 16.6 - - - -
160A ARG* 1.3 74.2 - - - +
162A ALA* 1.4 52.5 + - - +
164A ALA* 4.0 2.4 - - - +
165A GLY* 2.8 31.5 + - - -
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Residues in contact with ALA 162 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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130A GLY 4.8 1.6 - - - +
133A SER* 4.1 11.7 - - - +
134A LEU* 4.1 17.7 - - + +
137A ALA* 3.5 32.1 - - + -
158A ALA 2.8 13.1 + - - +
159A LEU 3.8 2.5 - - - +
161A THR* 1.4 70.4 - - - +
163A ARG* 1.4 54.4 + - - +
165A GLY* 4.0 0.2 - - - -
166A TYR* 2.8 38.4 + - - +
169A ARG* 5.9 0.3 + - - -
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Residues in contact with ARG 163 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A LEU 5.5 0.4 - - - -
13A ASP* 4.1 22.6 + - - +
134A LEU* 3.4 44.8 - - + +
138A LEU* 4.0 13.5 - - - +
159A LEU 2.9 18.0 + - - +
162A ALA* 1.4 74.4 - - - +
164A ALA* 1.4 64.7 + - - +
166A TYR* 3.6 7.8 + - - +
167A ARG* 3.1 49.9 + - - +
252B GLY 3.7 9.9 - - - +
253B GLU 3.6 17.9 - - - +
254B GLU* 2.7 41.3 + - - +
255B PRO* 3.8 12.7 - - - +
271B HIS* 6.0 3.2 - - - -
285B ARG* 5.1 3.6 - - - +
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Residues in contact with ALA 164 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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160A ARG 3.1 19.9 + - - +
161A THR* 4.0 3.1 - - - +
163A ARG* 1.4 74.6 - - - +
165A GLY* 1.3 68.2 + - - +
167A ARG* 3.1 7.2 + - - +
168A GLY 3.0 18.2 + - - -
250B LEU* 3.6 19.9 - - + +
251B GLY 3.8 13.2 - - - +
252B GLY* 3.8 14.5 - - - +
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Residues in contact with GLY 165 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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161A THR 2.8 21.1 + - - -
162A ALA 3.8 0.4 - - - -
164A ALA* 1.3 75.0 - - - +
166A TYR* 1.4 57.9 + - - +
168A GLY* 3.4 4.0 + - - -
169A ARG* 2.8 40.9 + - - +
250B LEU* 5.2 2.2 - - - -
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Residues in contact with TYR 166 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A CYS 6.0 1.6 - - - -
13A ASP* 2.6 39.9 + - + -
17A PHE* 5.0 3.1 - + - -
18A ARG* 3.4 18.3 + - - -
21A ILE* 5.0 1.2 - - - +
127A PHE* 3.6 48.2 - + - -
130A GLY* 3.7 26.5 - - - +
131A ALA* 3.8 14.8 - - + +
134A LEU* 4.0 16.8 - - + -
162A ALA 2.8 21.6 + - - +
163A ARG* 3.8 11.7 - - - +
165A GLY* 1.4 77.9 - - - +
167A ARG* 1.3 59.1 + - + +
169A ARG* 3.5 8.9 + - + +
170A ALA* 2.9 32.0 + - + +
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Residues in contact with ARG 167 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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11A LEU* 2.9 49.7 + - + +
12A LYS* 4.9 1.0 - - - +
163A ARG* 3.1 28.3 + - - +
164A ALA 3.3 8.5 - - - +
166A TYR* 1.3 77.3 - - + +
168A GLY* 1.3 56.6 + - - +
170A ALA* 3.3 7.6 + - - +
171A LEU* 3.0 34.5 + - - +
250B LEU* 3.8 15.5 - - + -
251B GLY* 2.7 47.4 + - - +
253B GLU* 2.7 30.0 + - - +
254B GLU 4.4 0.2 - - - -
255B PRO* 3.7 28.5 - - - +
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Residues in contact with GLY 168 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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164A ALA 3.0 12.0 + - - -
165A GLY* 3.5 6.1 - - - -
167A ARG* 1.3 77.1 - - - +
169A ARG* 1.4 58.6 + - - +
171A LEU* 3.6 2.2 + - - +
172A ASP* 3.3 24.3 + - - +
246B LYS* 3.3 24.8 - - - -
250B LEU* 3.9 15.7 - - - +
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Residues in contact with ARG 169 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123A ALA 5.1 1.8 - - - +
126A ASP* 2.6 61.3 + - + +
127A PHE* 3.9 22.4 - - + +
129A ARG* 3.9 15.0 - - - +
130A GLY* 3.5 25.4 - - - +
133A SER* 4.9 6.3 - - - -
162A ALA 5.9 0.4 + - - -
165A GLY* 2.8 28.5 + - - +
166A TYR* 3.5 6.9 + - + +
168A GLY* 1.4 68.6 - - - +
170A ALA* 1.3 61.7 + - - +
172A ASP* 3.3 21.4 + - - +
173A TYR* 3.3 13.7 + - - +
115C GLU* 5.5 1.2 + - - -
118C ARG* 4.5 6.9 - - - +
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Residues in contact with ALA 170 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A CYS* 3.5 36.7 - - - +
11A LEU* 5.3 0.9 - - + -
17A PHE* 4.7 0.9 - - + -
127A PHE* 3.5 24.8 - - + -
166A TYR* 2.9 23.8 + - + +
167A ARG* 3.3 8.3 + - - +
169A ARG* 1.3 71.6 - - - +
171A LEU* 1.4 56.2 + - - +
173A TYR* 3.4 5.7 + - - +
174A ALA* 3.0 26.7 + - - +
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Residues in contact with LEU 171 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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10A CYS* 4.9 3.8 - - + -
11A LEU* 3.9 23.3 - - + -
167A ARG 3.0 20.2 + - - +
168A GLY* 3.8 4.5 - - - +
169A ARG 3.5 0.2 - - - -
170A ALA* 1.4 76.4 - - - +
172A ASP* 1.4 59.0 + - - +
174A ALA* 3.1 9.3 - - + +
175A LEU* 2.8 24.4 + - - +
242B HIS* 3.5 35.6 + - + +
245B LEU* 4.0 32.1 - - + -
246B LYS* 4.2 17.9 - - + -
250B LEU* 3.9 23.3 - - + -
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Residues in contact with ASP 172 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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123A ALA* 4.5 12.6 - - + -
168A GLY 3.3 7.5 - - - +
169A ARG* 3.3 16.0 + - - +
170A ALA 3.3 1.0 - - - -
171A LEU* 1.4 72.1 - - - +
173A TYR* 1.3 61.2 + - - +
175A LEU* 3.4 9.6 + - - +
176A GLN* 3.0 39.8 + - + +
242B HIS* 5.5 2.1 + - - +
246B LYS* 2.7 38.8 + - - -
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Residues in contact with TYR 173 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A LEU* 4.1 24.0 - - + -
10A CYS* 5.9 0.2 - - - -
17A PHE* 5.4 4.5 - + - -
21A ILE* 3.3 36.0 + - + -
24A VAL* 3.4 13.0 - - - +
25A GLU* 4.9 4.7 - - - +
120A PHE* 3.4 39.9 - + - -
123A ALA* 4.4 9.1 - - + +
124A ARG* 4.4 25.4 - - + -
127A PHE* 3.8 34.1 - + + -
128A TRP* 5.8 1.3 - - - -
169A ARG 3.3 8.6 + - - +
170A ALA* 3.6 10.1 - - - +
172A ASP* 1.3 79.7 - - - +
174A ALA* 1.3 58.4 + - + +
177A ILE* 3.1 33.9 + - + +
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Residues in contact with ALA 174 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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5A LEU* 5.6 2.0 - - + -
7A PHE* 4.2 17.2 - - + -
10A CYS* 3.8 18.6 - - - -
170A ALA 3.0 14.0 + - - +
171A LEU* 3.1 16.4 - - + +
173A TYR* 1.3 74.4 - - - +
175A LEU* 1.3 62.3 + - - +
177A ILE* 3.5 9.4 - - - +
178A ASN* 3.1 25.3 + - - +
238B MET* 4.3 4.7 - - + +
242B HIS* 4.8 5.6 - - + -
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Residues in contact with LEU 175 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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171A LEU 2.8 16.5 + - - +
172A ASP* 3.6 14.4 - - - +
173A TYR 3.4 0.2 - - - -
174A ALA* 1.3 71.0 - - - +
176A GLN* 1.4 68.5 + - + +
178A ASN* 3.2 4.9 + - - +
179A VAL* 3.0 38.2 + - + +
235B LYS* 3.6 23.6 - - - +
238B MET* 3.8 30.3 - - + -
239B GLU* 3.9 38.4 - - + +
242B HIS* 4.1 12.2 - - + +
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Residues in contact with GLN 176 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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119A GLY* 3.9 24.0 + - - +
120A PHE* 3.8 36.1 + - + +
123A ALA* 4.5 4.9 - - + -
172A ASP* 3.0 26.4 + - + +
173A TYR* 4.6 0.2 - - - -
174A ALA 3.3 0.4 - - - -
175A LEU* 1.4 85.0 - - + +
177A ILE* 1.3 62.7 + - - +
179A VAL* 3.5 18.3 - - - +
180A ILE* 3.4 20.3 + - - +
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Residues in contact with ILE 177 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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1A MET* 3.6 45.5 - - + +
5A LEU* 4.3 20.9 - - + -
7A PHE* 4.8 4.9 - - + -
24A VAL* 3.9 21.3 - - + -
28A VAL* 5.6 0.2 - - + -
120A PHE* 3.5 31.5 - - + -
173A TYR* 3.1 23.2 + - + +
174A ALA* 3.5 12.1 - - - +
176A GLN* 1.3 74.2 - - - +
178A ASN* 1.4 66.1 + - + +
180A ILE* 3.2 21.6 + - + +
181A GLU* 3.3 8.5 + - - +
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Residues in contact with ASN 178 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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2A THR* 5.4 4.0 - - - +
7A PHE* 3.7 25.4 - - + -
174A ALA 3.1 15.5 + - - +
175A LEU 3.2 6.9 + - - +
177A ILE* 1.4 79.6 - - - +
179A VAL* 1.3 61.8 + - - +
181A GLU* 4.0 4.8 + - - +
182A ASP* 3.8 9.2 + - - +
234B GLU* 4.2 2.4 - - - +
235B LYS* 2.8 49.8 + - - +
238B MET* 3.4 36.4 - - - +
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Residues in contact with VAL 179 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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175A LEU* 3.0 25.5 + - + +
176A GLN* 3.5 21.5 - - - +
178A ASN* 1.3 77.7 - - - +
180A ILE* 1.4 59.7 + - + +
182A ASP* 3.5 3.8 + - - +
183A LYS* 2.9 41.3 + - + +
235B LYS* 3.7 34.9 - - + +
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Residues in contact with ILE 180 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
1A MET* 3.9 21.1 - - + -
28A VAL* 5.7 0.9 - - + -
31A LEU* 4.9 11.4 - - + -
112A LEU* 5.3 10.3 - - + -
116A GLY* 4.5 16.4 - - - +
117A LEU* 4.6 17.0 - - + -
120A PHE* 5.3 9.6 - - + -
176A GLN 3.4 5.7 + - - +
177A ILE* 3.2 27.7 + - + +
179A VAL* 1.4 80.1 - - + +
181A GLU* 1.4 57.8 + - - +
183A LYS* 4.3 14.1 - - + +
184A ARG* 2.9 55.4 + - + +
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Residues in contact with GLU 181 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
-1A GLY* 3.3 9.1 - - - -
0A SER 3.1 20.2 + - - -
1A MET* 2.8 29.5 + - + +
2A THR* 3.3 27.1 - - - +
177A ILE* 3.3 13.9 + - + +
178A ASN* 4.4 5.4 - - - +
179A VAL 3.4 0.2 - - - -
180A ILE* 1.4 79.4 - - - +
182A ASP* 1.4 67.0 + - - +
184A ARG* 2.9 32.3 + - - +
185A LYS* 4.1 10.9 + - - +
71B PRO* 3.5 18.7 - - - +
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Residues in contact with ASP 182 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
178A ASN 3.8 2.4 + - - +
179A VAL 3.5 3.7 + - - +
181A GLU* 1.4 78.4 - - - +
183A LYS* 1.3 59.8 + - - +
185A LYS* 3.1 40.5 + - - +
186A PHE* 3.2 26.1 - - + -
231B SER* 3.8 13.4 + - - +
234B GLU* 4.3 6.6 - - - +
235B LYS* 2.8 41.3 + - - -
----------------------------------------------------------
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Residues in contact with LYS 183 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
112A LEU* 4.0 16.8 - - + +
116A GLY* 5.5 8.7 - - - +
179A VAL* 2.9 32.2 + - + +
180A ILE* 4.3 11.4 - - + +
182A ASP* 1.3 75.2 - - - +
184A ARG* 1.4 63.6 + - - +
185A LYS 3.2 0.7 + - - -
186A PHE* 3.4 12.3 + - + +
187A ASP* 2.6 53.8 + - - +
228B VAL* 6.0 4.7 - - + -
----------------------------------------------------------
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Residues in contact with ARG 184 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
0A SER* 3.7 6.5 - - - -
1A MET* 3.5 18.4 - - - +
27A GLU* 2.6 34.6 + - - +
31A LEU* 3.8 32.8 - - + +
112A LEU* 5.3 9.4 - - + -
180A ILE* 2.9 34.7 + - + +
181A GLU* 2.9 46.7 + - - +
183A LYS* 1.4 71.3 - - - +
185A LYS* 1.4 64.0 + - + +
187A ASP* 4.8 0.4 - - - +
188A ILE* 3.2 32.4 + - - +
66B LEU 5.5 0.2 + - - -
69B LEU* 3.6 32.3 + - - +
70B GLY* 4.2 11.0 - - - +
71B PRO* 5.5 0.7 - - - -
----------------------------------------------------------
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Residues in contact with LYS 185 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
181A GLU* 4.1 10.7 + - - +
182A ASP* 3.1 33.4 + - - +
184A ARG* 1.4 82.3 - - + +
186A PHE* 1.3 91.1 + - + +
188A ILE* 3.5 9.2 - - - +
189A MET* 2.9 31.0 + - - +
71B PRO* 4.5 16.8 - - + +
73B GLU* 2.7 36.1 + - - +
75B MET* 5.6 0.2 - - + -
76B MET* 3.6 26.4 - - + +
----------------------------------------------------------
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Residues in contact with PHE 186 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
182A ASP* 3.2 36.3 - - - -
183A LYS* 3.8 9.9 - - + +
185A LYS* 1.3 105.1 - - + +
187A ASP* 1.3 61.2 + - + +
189A MET* 3.3 2.9 + - - +
190A GLU* 2.9 30.8 + - - +
75B MET* 4.4 4.3 - - + -
224B LEU* 3.7 32.1 - - + +
227B LEU* 3.7 30.3 - - + -
228B VAL* 3.8 28.0 - - + -
231B SER* 4.1 25.1 - - - -
----------------------------------------------------------
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Residues in contact with ASP 187 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
108A GLN* 4.2 18.4 + - + +
109A ILE* 5.5 0.9 - - - -
112A LEU* 3.5 28.1 - - + +
183A LYS* 2.6 53.7 + - - +
184A ARG 4.8 0.4 - - - +
186A PHE* 1.3 79.5 - - - +
188A ILE* 1.4 57.2 + - - +
190A GLU* 3.2 21.6 + - - +
191A PHE* 2.9 26.2 + - - +
----------------------------------------------------------
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Residues in contact with ILE 188 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
31A LEU* 6.1 1.6 - - + -
35A LEU* 4.5 3.8 - - + -
109A ILE* 4.2 18.4 - - + -
112A LEU* 4.4 12.3 - - + -
184A ARG 3.2 24.4 + - - +
185A LYS* 3.5 9.2 - - - +
187A ASP* 1.4 74.7 - - - +
189A MET* 1.3 67.6 + - - +
191A PHE* 3.3 10.4 + - + +
192A VAL* 3.1 28.5 + - + +
63B ILE* 5.4 0.7 - - + +
66B LEU* 3.9 49.4 - - + -
67B ALA* 5.7 0.2 - - - -
76B MET* 5.0 2.5 - - - -
80B LEU* 3.7 29.2 - - + -
----------------------------------------------------------
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Residues in contact with MET 189 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
185A LYS 2.9 22.3 + - - +
186A PHE* 3.3 7.8 + - - +
188A ILE* 1.3 76.6 - - - +
190A GLU* 1.3 54.6 + - - +
192A VAL* 3.3 1.6 + - - +
193A LEU* 2.9 36.7 + - + +
75B MET* 3.7 29.4 - - + +
76B MET* 3.9 13.7 - - + -
79B CYS* 4.1 1.1 - - + -
80B LEU* 3.9 31.6 - - + +
83B PHE* 4.0 13.9 - - - -
220B LEU* 3.3 33.9 - - + -
224B LEU* 3.8 24.2 - - + -
----------------------------------------------------------
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Residues in contact with GLU 190 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
107A GLN* 4.8 2.6 - - - +
108A GLN* 3.4 29.8 + - + +
186A PHE 2.9 15.9 + - - +
187A ASP* 3.2 26.5 + - - +
189A MET* 1.3 68.4 - - - +
191A PHE* 1.4 57.0 + - - +
193A LEU* 3.3 8.7 + - + +
194A ARG* 3.0 46.7 + - - +
224B LEU* 3.9 15.2 - - + +
225B HIS* 6.0 5.0 - - - -
----------------------------------------------------------
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Residues in contact with PHE 191 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
38A LEU* 4.6 15.9 - - + -
101A THR* 5.0 1.6 - - + -
104A THR* 3.3 34.5 - - + -
105A LEU* 3.5 41.5 - - + -
108A GLN* 3.8 19.3 - - + -
109A ILE* 4.3 19.5 - - + -
187A ASP 2.9 12.6 + - - +
188A ILE* 3.5 14.6 - - + +
189A MET 3.2 0.2 - - - -
190A GLU* 1.4 76.1 - - - +
192A VAL* 1.3 60.4 + - + +
194A ARG* 3.5 2.9 + - - +
195A LEU* 3.0 51.7 + - + +
59B PHE* 4.2 17.7 - + - -
63B ILE* 4.9 5.6 - - + -
66B LEU* 6.4 0.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 192 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
188A ILE 3.1 16.0 + - - +
189A MET 3.3 7.2 + - - +
191A PHE* 1.3 77.4 - - + +
193A LEU* 1.4 64.4 + - - +
195A LEU* 3.3 8.7 + - + +
196A VAL* 3.1 26.2 + - + +
63B ILE* 3.3 41.3 - - + -
80B LEU* 3.8 20.9 - - + -
83B PHE* 3.5 36.8 - - + -
84B THR* 4.8 5.4 - - + -
87B LEU* 5.4 3.6 - - + -
----------------------------------------------------------
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Residues in contact with LEU 193 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
189A MET* 2.9 26.1 + - + +
190A GLU* 3.4 12.1 - - + +
192A VAL* 1.4 76.2 - - - +
194A ARG* 1.4 61.0 + - - +
196A VAL* 3.5 1.5 + - - +
197A GLU* 3.0 30.9 + - - +
83B PHE* 3.7 33.2 - - + -
217B ARG* 3.5 37.0 - - + +
220B LEU* 4.6 3.6 - - + -
221B GLY* 3.4 31.2 - - - +
224B LEU* 3.6 24.9 - - + -
----------------------------------------------------------
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Residues in contact with ARG 194 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
104A THR* 3.3 36.6 - - - +
107A GLN* 5.2 7.7 + - - -
108A GLN* 4.1 9.9 - - - +
190A GLU* 3.0 34.2 + - - +
191A PHE 3.6 5.4 - - - +
193A LEU* 1.4 73.2 - - - +
195A LEU* 1.3 67.9 + - - +
197A GLU* 2.7 49.0 + - - +
198A ALA* 3.4 20.3 + - - +
217B ARG* 4.4 9.3 - - - +
225B HIS* 6.1 3.0 - - - -
----------------------------------------------------------
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Residues in contact with LEU 195 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
101A THR* 4.1 29.4 - - + +
104A THR* 4.7 5.8 - - + -
191A PHE* 3.0 38.5 + - + +
192A VAL* 3.3 9.8 + - - +
194A ARG* 1.3 78.3 - - - +
196A VAL* 1.3 64.9 + - + +
198A ALA* 3.3 12.3 + - - +
199A GLN* 3.4 10.7 + - - +
59B PHE* 3.8 21.8 - - + -
63B ILE* 3.4 33.4 - - + -
87B LEU* 5.2 11.7 - - + -
----------------------------------------------------------
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Residues in contact with VAL 196 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
192A VAL 3.1 14.3 + - - +
193A LEU* 3.6 9.6 - - - +
195A LEU* 1.3 71.7 - - + +
197A GLU* 1.3 59.1 + - - +
198A ALA 3.5 0.2 - - - -
199A GLN* 3.6 9.5 - - + +
200A ALA* 2.9 30.1 + - - +
83B PHE* 3.7 37.0 - - + +
87B LEU* 4.1 30.1 - - + -
210B LEU* 5.2 0.5 - - - +
213B LEU* 3.7 29.4 - - + +
214B SER* 5.8 0.6 + - - -
217B ARG* 3.8 12.1 - - + -
----------------------------------------------------------
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Residues in contact with GLU 197 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
193A LEU 3.0 20.5 + - - +
194A ARG* 2.7 51.8 + - - +
196A VAL* 1.3 74.9 - - - +
198A ALA* 1.4 57.3 + - - +
200A ALA* 3.2 7.0 + - - +
201A THR* 2.8 35.3 + - - +
214B SER* 6.1 0.9 - - - +
217B ARG* 3.5 35.9 + - - +
----------------------------------------------------------
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Residues in contact with ALA 198 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A LEU* 3.9 24.5 - - + +
100A ALA* 4.6 18.6 - - + -
101A THR* 5.7 1.8 - - - +
194A ARG 3.4 8.6 + - - +
195A LEU* 3.3 10.1 + - - +
197A GLU* 1.4 78.0 + - - +
199A GLN* 1.4 55.6 + - - +
201A THR* 3.3 8.5 + - - +
202A HIS* 2.8 29.8 + - - +
----------------------------------------------------------
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Residues in contact with GLN 199 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
97A LEU* 4.3 8.8 - - + +
195A LEU 3.4 9.9 + - - +
196A VAL* 3.6 11.1 - - - +
197A GLU 3.3 0.2 - - - -
198A ALA* 1.4 73.2 - - - +
200A ALA* 1.4 64.8 - - - +
202A HIS* 3.2 6.1 + - - +
203A PHE* 2.9 47.0 + - + +
86B SER* 5.3 0.3 + - - -
87B LEU* 3.4 28.3 - - + +
90B LYS* 4.5 17.9 - - - +
210B LEU* 3.2 36.5 - - + +
213B LEU* 5.1 1.0 - - - +
----------------------------------------------------------
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Residues in contact with ALA 200 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
196A VAL 2.9 20.8 + - - +
197A GLU* 3.2 6.9 + - - +
199A GLN* 1.4 73.0 - - - +
201A THR* 1.3 63.6 + - - +
203A PHE* 4.3 1.0 - - - +
204A GLN* 3.2 29.3 + - - +
207B HIS* 5.4 1.0 + - - -
210B LEU* 3.6 33.8 - - + +
211B SER* 5.4 0.9 - - - -
214B SER* 3.8 23.6 - - - +
----------------------------------------------------------
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Residues in contact with THR 201 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
197A GLU* 2.8 19.9 + - - +
198A ALA* 3.7 9.4 - - - -
199A GLN 3.1 0.2 - - - -
200A ALA* 1.3 79.6 - - - +
202A HIS* 1.4 61.1 + - - +
204A GLN* 3.4 4.4 + - - +
205A GLN* 3.3 41.9 + - + +
----------------------------------------------------------
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Residues in contact with HIS 202 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A LYS* 3.5 31.6 - - + +
93A SER* 2.9 34.1 + - - +
94A HIS* 3.1 35.4 + + + -
97A LEU* 3.8 15.0 - - + -
198A ALA 2.8 19.8 + - - +
199A GLN* 3.2 4.5 + - - +
201A THR* 1.4 72.1 - - - +
203A PHE* 1.3 85.6 + + - +
204A GLN 3.3 0.2 + - - -
205A GLN* 3.6 2.6 + - - +
206A GLY* 3.5 14.6 + - - -
203B PHE* 4.1 19.2 - + - -
----------------------------------------------------------
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Residues in contact with PHE 203 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
94A HIS* 5.9 2.5 - + - -
199A GLN* 2.9 47.2 + - + +
200A ALA 4.5 2.0 - - - +
202A HIS* 1.3 93.9 - + - +
204A GLN* 1.3 57.9 + - - +
206A GLY 3.4 2.3 + - - -
207A HIS* 2.9 29.7 + - - +
90B LYS* 5.1 7.4 - - + -
202B HIS* 3.9 36.1 - + - -
203B PHE* 3.6 30.8 - + + -
206B GLY* 3.8 17.0 - - - -
207B HIS* 4.5 14.7 - - + +
210B LEU* 3.8 28.0 - - + -
----------------------------------------------------------
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Residues in contact with GLN 204 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
200A ALA* 3.2 19.3 + - - +
201A THR* 4.0 4.0 - - - +
202A HIS 3.1 0.8 - - - -
203A PHE* 1.3 78.6 - - - +
205A GLN* 1.4 56.1 + - - +
207A HIS* 3.1 8.1 + - + +
208A GLU* 3.0 38.4 + - + +
207B HIS* 3.5 31.6 + - + +
211B SER* 5.0 3.8 + - - -
214B SER* 5.7 3.3 + - - -
----------------------------------------------------------
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Residues in contact with GLN 205 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A HIS* 5.1 21.3 + - + -
93A SER* 3.0 31.2 + - - +
96A GLU* 4.8 10.9 + - - +
201A THR* 3.3 33.5 + - + +
202A HIS 3.6 4.2 + - - +
203A PHE 3.5 0.2 - - - -
204A GLN* 1.4 72.3 - - - +
206A GLY* 1.3 59.8 + - - +
207A HIS 3.5 0.9 + - - -
208A GLU* 3.5 23.8 + - - +
209A GLU* 3.9 13.3 + - - +
----------------------------------------------------------
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Residues in contact with GLY 206 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
90A LYS* 4.2 29.7 + - - -
202A HIS 3.5 7.4 + - - -
203A PHE 3.4 7.0 + - - -
204A GLN 3.3 0.6 - - - -
205A GLN* 1.3 77.4 - - - +
207A HIS* 1.3 58.5 + - - +
208A GLU 3.4 0.2 - - - -
209A GLU* 4.7 4.6 - - - +
210A LEU* 3.9 19.9 + - - +
203B PHE* 4.2 18.6 - - - -
----------------------------------------------------------
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Residues in contact with HIS 207 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
203A PHE 2.9 16.3 + - - +
204A GLN* 3.1 12.2 + - + +
206A GLY* 1.3 77.1 - - - +
208A GLU* 1.4 64.4 + - - +
209A GLU 3.6 0.9 - - - -
210A LEU* 3.1 34.1 + - + +
211A SER 4.7 0.9 + - - -
203B PHE* 3.9 3.4 - - - +
204B GLN* 3.9 32.7 + - - +
207B HIS* 3.3 43.5 + + + -
----------------------------------------------------------
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Residues in contact with GLU 208 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
89A HIS* 6.0 1.6 - - - -
204A GLN* 3.0 22.8 + - + +
205A GLN* 3.7 15.3 - - - +
206A GLY 3.4 0.4 - - - -
207A HIS* 1.4 79.8 - - - +
209A GLU* 1.4 59.2 + - + +
211A SER* 4.2 9.4 + - - -
----------------------------------------------------------
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Residues in contact with GLU 209 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
86A SER* 2.7 31.2 + - - +
89A HIS* 2.8 34.3 + - - +
90A LYS* 4.8 7.0 + - - +
205A GLN 3.9 9.7 + - - +
206A GLY* 5.0 3.5 - - - +
207A HIS 4.7 0.2 - - - +
208A GLU* 1.4 74.4 + - - +
210A LEU* 1.4 63.0 + - - +
211A SER* 3.2 4.3 - - - -
212A ARG* 2.7 68.5 + - + +
213A LEU* 3.2 10.6 + - + +
----------------------------------------------------------
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il