Contacts of the helix formed by residues 180 - 211 (chain C) in PDB entry 4DAJ


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with THR 180 (chain C).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101C  VAL*     4.1    13.9    -      -       -      +
    177C  ALA      5.3     1.1    -      -       -      +
    178C  LYS      3.4    12.4    +      -       -      +
    179C  ARG*     1.3    80.6    -      -       -      +
    181C  THR*     1.3    65.1    +      -       -      +
    182C  LYS*     3.3    12.8    +      -       -      +
    183C  ARG*     3.1    29.3    +      -       +      +
    184C  ALA*     3.3    18.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 181 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     99C  LYS*     5.4     5.6    -      -       +      -
    100C  THR*     4.6    22.2    -      -       -      +
    101C  VAL*     4.6     4.2    -      -       +      +
    104C  TYR*     4.0    29.4    +      -       +      -
    180C  THR*     1.3    72.8    -      -       -      +
    182C  LYS*     1.3    61.5    +      -       -      +
    184C  ALA*     3.2    10.1    +      -       -      +
    185C  GLY*     2.9    26.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 182 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    180C  THR*     3.3    11.8    -      -       -      +
    181C  THR*     1.3    78.7    +      -       -      +
    183C  ARG*     1.3    68.4    +      -       +      +
    184C  ALA      3.0     0.2    +      -       -      -
    185C  GLY*     3.2     2.6    +      -       -      -
    186C  VAL*     2.9    33.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 183 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101C  VAL*     6.4     0.2    -      -       +      -
    178C  LYS*     3.8    31.1    +      -       -      +
    179C  ARG*     4.5     3.1    -      -       +      -
    180C  THR*     3.1    31.6    +      -       -      +
    182C  LYS*     1.3    76.5    -      -       +      +
    184C  ALA*     1.3    56.0    +      -       -      +
    186C  VAL*     3.5     5.5    +      -       -      +
    187C  MET*     2.9    47.7    +      -       -      +
    209D  PHE      5.2     1.8    +      -       -      -
    210D  VAL*     3.5    31.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 184 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101C  VAL*     4.4     5.4    -      -       +      +
    104C  TYR*     3.5    27.1    -      -       +      -
    105C  PHE*     3.8    28.9    -      -       +      -
    180C  THR      3.3     9.6    +      -       -      +
    181C  THR*     3.2    10.7    +      -       -      +
    182C  LYS      3.0     0.4    -      -       -      -
    183C  ARG*     1.3    76.3    -      -       -      +
    185C  GLY*     1.3    67.6    +      -       -      +
    187C  MET*     4.0     1.6    -      -       -      +
    188C  ILE*     3.0    28.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 185 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104C  TYR*     3.3    24.1    -      -       -      -
    181C  THR      2.9    15.4    +      -       -      -
    182C  LYS*     3.2     2.9    +      -       -      -
    184C  ALA*     1.3    73.9    -      -       -      +
    186C  VAL*     1.3    57.5    +      -       -      +
    188C  ILE*     3.6     4.1    -      -       -      +
    189C  GLY*     2.9    26.2    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 186 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    182C  LYS*     2.9    26.0    +      -       +      +
    183C  ARG*     3.7     6.5    -      -       -      +
    185C  GLY*     1.3    73.7    -      -       -      +
    187C  MET*     1.3    67.4    +      -       +      +
    189C  GLY*     3.2     2.6    +      -       -      -
    190C  LEU*     2.9    22.1    +      -       +      +
    209D  PHE*     4.0    27.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with MET 187 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    105C  PHE*     5.6     4.3    -      -       +      -
    160C  VAL*     4.2    34.2    -      -       +      +
    164C  ASP*     6.6     0.4    -      -       +      -
    175C  TYR*     5.1    17.3    -      -       +      +
    183C  ARG*     2.9    35.4    +      -       +      +
    184C  ALA*     4.1     4.3    -      -       -      +
    186C  VAL*     1.3    74.7    -      -       +      +
    188C  ILE*     1.3    57.2    +      -       +      +
    190C  LEU*     3.3    12.4    +      -       -      +
    191C  ALA*     2.9    27.0    +      -       -      +
    206D  TRP*     6.5     1.1    -      -       +      -
    209D  PHE*     4.9    16.4    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 188 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    104C  TYR*     3.9    26.5    -      -       +      +
    105C  PHE*     4.0    24.0    -      -       +      -
    108C  SER*     3.4    39.5    -      -       -      +
    157C  ASN*     4.7     7.6    -      -       -      +
    160C  VAL*     5.6     5.4    -      -       +      -
    184C  ALA      3.0    20.2    +      -       -      +
    185C  GLY*     3.6     3.8    -      -       -      +
    187C  MET*     1.3    75.2    -      -       +      +
    189C  GLY*     1.3    67.6    +      -       -      +
    191C  ALA*     2.9    17.5    +      -       -      +
    192C  TRP*     2.9    32.0    +      -       +      +
----------------------------------------------------------
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Residues in contact with GLY 189 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    185C  GLY      2.9    15.3    +      -       -      -
    186C  VAL*     3.7     3.6    -      -       -      -
    188C  ILE*     1.3    77.9    -      -       -      +
    190C  LEU*     1.3    57.1    +      -       -      +
    192C  TRP*     3.3     7.6    +      -       -      +
    193C  VAL*     2.9    34.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with LEU 190 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    156C  MET*     5.8     0.7    -      -       +      -
    186C  VAL*     2.9    14.5    +      -       +      +
    187C  MET*     3.4    14.4    -      -       -      +
    189C  GLY*     1.3    76.4    -      -       -      +
    191C  ALA*     1.3    57.2    +      -       -      +
    193C  VAL*     3.4    13.3    +      -       +      +
    194C  ILE*     2.9    61.5    +      -       +      +
    206D  TRP*     6.5     0.9    -      -       +      -
    209D  PHE*     4.1    28.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 191 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    153C  ALA*     5.2     5.2    -      -       -      +
    156C  MET*     4.0    32.7    -      -       +      +
    157C  ASN*     5.5     4.0    -      -       -      +
    160C  VAL*     5.0    11.4    -      -       +      -
    187C  MET      2.9    13.5    +      -       -      +
    188C  ILE*     2.9    14.3    +      -       +      +
    190C  LEU*     1.3    76.1    -      -       -      +
    192C  TRP*     1.3    68.4    +      -       +      +
    194C  ILE*     3.3     3.6    +      -       -      +
    195C  SER*     2.9    27.1    +      -       -      -
----------------------------------------------------------
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Residues in contact with TRP 192 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    108C  SER*     3.6    19.4    +      -       -      -
    111C  CYS*     4.5    11.0    -      -       +      -
    112C  ALA*     4.2    37.9    -      -       +      -
    115C  ILE*     4.4    19.5    -      -       +      -
    149C  VAL*     4.5    13.0    -      -       +      +
    150C  ALA*     4.9     9.4    -      -       +      -
    153C  ALA*     4.3    21.3    +      -       +      +
    157C  ASN*     4.9     2.9    -      -       -      +
    188C  ILE*     2.9    37.5    +      -       +      +
    189C  GLY*     3.7     8.7    -      -       -      +
    191C  ALA*     1.3    76.5    -      -       +      +
    193C  VAL*     1.3    65.6    +      -       +      +
    195C  SER*     3.0     9.3    +      -       -      -
    196C  PHE*     2.9    25.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with VAL 193 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    189C  GLY      2.9    21.7    +      -       -      +
    190C  LEU*     3.4    18.8    -      -       +      +
    192C  TRP*     1.3    77.7    -      -       +      +
    194C  ILE*     1.3    67.0    +      -       +      +
    196C  PHE*     3.1     7.7    +      -       +      +
    197C  VAL*     2.9    38.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with ILE 194 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    156C  MET*     4.0    24.7    -      -       +      -
    190C  LEU*     2.9    50.1    +      -       +      +
    191C  ALA      3.6     6.1    -      -       -      +
    193C  VAL*     1.3    74.6    -      -       +      +
    195C  SER*     1.3    63.1    +      -       -      +
    197C  VAL*     3.3     8.7    +      -       +      +
    198C  LEU*     2.9    44.3    +      -       +      +
----------------------------------------------------------
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Residues in contact with SER 195 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    149C  VAL*     3.7    26.5    -      -       -      -
    152C  ASN*     3.8    11.5    +      -       -      +
    153C  ALA*     3.2    26.7    +      -       -      +
    156C  MET*     3.8     8.0    -      -       -      -
    191C  ALA      2.9    15.2    +      -       -      -
    192C  TRP      3.2     9.0    -      -       -      -
    193C  VAL      3.0     0.2    +      -       -      -
    194C  ILE*     1.3    76.9    -      -       -      +
    196C  PHE*     1.3    65.0    +      -       -      +
    198C  LEU*     2.9    13.1    +      -       -      -
    199C  TRP*     2.9    20.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 196 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    149C  VAL*     3.6    20.3    -      -       +      +
    192C  TRP      2.9    14.3    +      -       -      +
    193C  VAL*     3.5     9.2    -      -       +      +
    195C  SER*     1.3    72.9    -      -       -      +
    197C  VAL*     1.3    72.7    +      -       +      +
    200C  ALA*     2.9    35.4    +      -       +      +
    201C  PRO*     2.8    31.9    -      -       +      +
    204C  LEU*     5.9     3.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 197 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    193C  VAL*     2.9    33.4    +      -       +      +
    194C  ILE*     3.4    11.9    -      -       -      +
    196C  PHE*     1.3    86.6    -      -       +      +
    198C  LEU*     1.3    69.7    +      -       +      +
    201C  PRO*     3.1    25.3    -      -       +      +
    197D  VAL*     5.4    12.6    -      -       +      -
    198D  LEU*     6.0     2.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 198 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    152C  ASN*     5.0    12.1    -      -       -      +
    156C  MET*     5.6     1.1    -      -       -      -
    194C  ILE*     2.9    38.5    +      -       +      +
    195C  SER      2.9     3.6    +      -       -      +
    197C  VAL*     1.3    86.8    -      -       +      +
    199C  TRP*     1.3    75.1    +      -       +      +
    201C  PRO*     4.5     0.7    -      -       -      +
    202C  ALA*     4.0    12.5    -      -       -      +
    198D  LEU*     4.2    26.5    -      -       +      -
----------------------------------------------------------
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Residues in contact with TRP 199 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    148C  TYR*     3.9    32.1    -      +       +      -
    149C  VAL*     3.8    15.3    -      -       +      +
    152C  ASN*     3.4    33.2    -      -       +      +
    195C  SER      2.9    21.9    +      -       -      +
    198C  LEU*     1.3    89.5    -      -       +      +
    200C  ALA*     1.3    67.1    +      -       -      +
    201C  PRO*     3.3     2.7    -      -       -      -
    202C  ALA*     2.8    16.7    +      -       -      +
    203C  ILE*     2.9    26.0    +      -       +      +
    222C  ILE*     4.7     2.7    -      -       +      -
    224C  PHE*     4.4    26.5    -      +       -      -
    225C  LEU*     5.3     2.9    -      -       +      -
    234C  THR*     3.7    29.2    -      -       +      -
    238C  ALA*     4.4     7.4    -      -       +      -
   2000C  0HK      3.1    36.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 200 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    145C  SER*     4.4    16.6    -      -       -      -
    149C  VAL*     4.0     6.6    -      -       +      +
    196C  PHE*     2.9    53.9    +      -       +      +
    199C  TRP*     1.3    74.1    -      -       -      +
    201C  PRO*     1.3    63.2    -      -       +      +
    203C  ILE      4.7     0.2    -      -       -      +
    204C  LEU*     2.9    40.8    +      -       +      +
----------------------------------------------------------
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Residues in contact with PRO 201 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    196C  PHE*     2.8    33.2    -      -       +      +
    197C  VAL*     3.1    26.9    -      -       +      +
    198C  LEU      5.5     0.2    -      -       -      +
    199C  TRP      3.3     2.9    -      -       -      -
    200C  ALA*     1.3    79.2    -      -       +      +
    202C  ALA*     1.3    57.3    +      -       -      +
    204C  LEU*     5.0     1.6    -      -       +      -
    205C  PHE*     2.9    43.8    +      -       +      +
    206C  TRP      3.9     0.3    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 202 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    198C  LEU      4.0    13.2    +      -       -      +
    199C  TRP*     2.8    16.7    +      -       +      +
    201C  PRO*     1.3    73.7    -      -       -      +
    203C  ILE*     1.3    64.0    +      -       -      +
    206C  TRP*     2.8    34.3    +      -       +      +
    224C  PHE*     3.5    26.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with ILE 203 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    141C  ASP*     4.1    19.4    -      -       -      +
    144C  LEU*     3.9    19.5    -      -       +      +
    145C  SER*     3.5    39.7    -      -       -      +
    148C  TYR*     4.0    12.3    -      -       +      -
    199C  TRP*     2.9    24.6    +      -       +      +
    200C  ALA      4.0     2.7    -      -       -      +
    202C  ALA*     1.3    78.0    -      -       -      +
    204C  LEU*     1.3    67.9    +      -       +      +
    206C  TRP*     4.2     4.5    +      -       -      +
    207C  GLN*     4.9     3.8    +      -       -      +
    222C  ILE*     3.9    34.3    -      -       +      -
    223C  GLN*     5.7     5.3    +      -       -      +
    224C  PHE*     4.1    12.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with LEU 204 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    141C  ASP*     3.6    44.9    -      -       +      +
    142C  LEU*     4.5    11.0    -      -       +      +
    145C  SER*     4.0    13.5    -      -       -      +
    196C  PHE*     5.9     1.8    -      -       +      -
    200C  ALA*     2.9    33.4    +      -       +      +
    201C  PRO*     4.4     0.9    -      -       +      +
    203C  ILE*     1.3    78.8    -      -       +      +
    205C  PHE*     1.3    80.3    +      -       +      +
    206C  TRP      3.5     0.2    -      -       -      -
    207C  GLN*     3.5    29.8    +      -       -      +
    208C  TYR*     3.9     1.4    -      -       -      -
----------------------------------------------------------
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Residues in contact with PHE 205 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201C  PRO*     2.9    26.5    +      -       +      +
    204C  LEU*     1.3    91.5    -      -       +      +
    206C  TRP*     1.3    59.8    +      -       -      +
    207C  GLN      3.3     3.1    -      -       -      -
    208C  TYR*     3.4    22.6    +      +       +      +
    209C  PHE*     2.9    29.1    +      -       +      +
----------------------------------------------------------
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Residues in contact with TRP 206 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    201C  PRO      3.9     0.6    +      -       -      -
    202C  ALA*     2.8    27.0    +      -       +      +
    203C  ILE      4.5     2.7    -      -       -      +
    204C  LEU      3.5     0.6    -      -       -      -
    205C  PHE*     1.3    77.7    -      -       -      +
    207C  GLN*     1.3    62.0    +      -       -      +
    209C  PHE*     3.1    33.0    +      +       +      +
    210C  VAL*     2.9    44.1    +      -       +      +
    223C  GLN*     3.4    42.2    -      -       +      +
    224C  PHE*     3.5    39.2    -      +       +      +
    190D  LEU*     6.2     3.8    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 207 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    137C  ASN*     5.8     2.5    +      -       -      +
    141C  ASP*     3.6    21.4    +      -       -      -
    203C  ILE      4.9     3.4    +      -       -      +
    204C  LEU      3.5    14.3    +      -       -      +
    206C  TRP*     1.3    77.0    -      -       -      +
    208C  TYR*     1.3   102.4    +      -       +      +
    210C  VAL      3.1     2.4    +      -       -      -
    211C  GLY      2.8    25.1    +      -       -      -
    212C  LYS      3.3    20.0    +      -       -      +
    213C  ARG*     3.4    36.9    +      -       -      +
    223C  GLN*     3.0    25.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 208 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    137C  ASN*     5.7     2.9    +      -       -      -
    204C  LEU      3.9    10.3    -      -       -      -
    205C  PHE*     3.4    23.0    +      +       +      +
    207C  GLN*     1.3   111.2    +      -       +      +
    209C  PHE*     1.3    60.5    +      -       -      +
    211C  GLY*     3.8    10.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 209 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    205C  PHE      2.9    17.2    +      -       -      +
    206C  TRP*     3.5    39.3    -      +       +      +
    207C  GLN      3.1     0.4    -      -       -      -
    208C  TYR*     1.3    77.7    -      -       -      +
    210C  VAL*     1.3    65.0    +      -       +      +
    211C  GLY*     3.3     0.4    -      -       -      -
    186D  VAL*     3.4    34.3    -      -       +      -
    187D  MET*     5.3     9.0    -      -       +      -
    190D  LEU*     4.2    30.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with VAL 210 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    206C  TRP*     2.9    58.1    +      -       +      +
    207C  GLN      3.8     2.9    -      -       -      +
    209C  PHE*     1.3    79.9    -      -       +      +
    211C  GLY*     1.3    58.4    +      -       -      +
    212C  LYS*     4.3    12.4    -      -       +      +
    214C  THR*     5.4     2.9    -      -       -      +
    223C  GLN*     4.2     9.4    -      -       -      +
    183D  ARG*     5.4    10.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLY 211 (chain C). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    207C  GLN      2.8     8.9    +      -       -      -
    208C  TYR*     3.8    10.5    +      -       -      -
    209C  PHE      3.3     2.4    -      -       -      -
    210C  VAL*     1.3    79.1    -      -       -      +
    212C  LYS*     1.3    61.1    +      -       -      +
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il