Contacts of the helix formed by residues 270 - 300 (chain B) in PDB entry 4DJH


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ARG 270 (chain B).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    156B  ARG*     4.3    14.9    -      -       -      +
    159B  ALA*     6.1     1.0    -      -       -      +
    253B  LEU*     5.5     0.6    -      -       -      +
    267B  ARG      5.0     0.9    -      -       -      -
    268B  ASN      4.2     0.4    +      -       -      -
    269B  LEU*     1.3    75.3    -      -       -      +
    271B  ARG*     1.3    80.9    +      -       +      +
    272B  ILE*     3.0     9.1    +      -       +      +
    273B  THR*     3.1    16.1    +      -       -      +
    274B  ARG*     2.8    22.8    +      -       -      +
   1305B  PEG      2.5    42.8    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 271 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    269B  LEU      4.0     0.4    +      -       -      -
    270B  ARG*     1.3    80.4    -      -       +      +
    272B  ILE*     1.3    62.2    +      -       +      +
    274B  ARG*     3.7    31.3    +      -       -      +
    275B  LEU*     3.3    14.2    +      -       -      +
    333B  LEU      3.7    24.5    -      -       -      +
    334B  ASP*     4.6    12.1    -      -       -      +
    335B  GLU*     5.0    13.9    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 272 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     94B  THR*     4.0    15.7    -      -       +      +
     95B  ASN*     6.1     0.9    -      -       -      +
    156B  ARG*     3.1    37.0    -      -       -      +
    270B  ARG*     3.1     6.8    -      -       +      +
    271B  ARG*     1.3    81.1    -      -       +      +
    273B  THR*     1.3    67.8    +      -       -      +
    275B  LEU*     3.2    13.2    -      -       +      +
    276B  VAL*     3.1    20.1    +      -       -      +
    334B  ASP*     4.3    19.5    -      -       -      +
   1305B  PEG      3.3    42.0    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with THR 273 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    156B  ARG*     3.2    29.5    +      -       +      +
    160B  VAL*     4.7    10.2    -      -       +      +
    246B  TYR*     3.5    15.7    +      -       +      +
    249B  MET*     4.0    26.5    -      -       +      -
    253B  LEU*     5.5     4.5    -      -       +      -
    269B  LEU*     4.2    12.8    -      -       +      -
    270B  ARG*     3.1    21.2    +      -       -      +
    272B  ILE*     1.3    75.6    -      -       -      +
    274B  ARG*     1.3    66.9    +      -       -      +
    276B  VAL*     3.2     4.6    +      -       -      +
    277B  LEU*     3.0    21.1    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ARG 274 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    266B  ASP*     4.5    26.8    +      -       +      +
    269B  LEU*     4.1    15.1    -      -       +      +
    270B  ARG      2.8    18.0    +      -       -      +
    271B  ARG*     3.7    32.2    +      -       -      +
    273B  THR*     1.3    76.2    -      -       -      +
    275B  LEU*     1.3    62.7    +      -       -      +
    277B  LEU*     3.1     8.8    +      -       +      +
    278B  VAL*     2.9    38.9    +      -       +      +
    332B  PHE      4.8     3.0    +      -       -      -
    333B  LEU*     3.9    34.4    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 275 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     94B  THR*     5.1     7.4    -      -       +      -
     98B  ILE*     4.3    24.7    -      -       +      -
    152B  MET*     5.4     1.3    -      -       +      -
    271B  ARG      3.3    11.3    +      -       -      +
    272B  ILE*     3.2    19.0    +      -       +      +
    274B  ARG*     1.3    80.6    -      -       -      +
    276B  VAL*     1.3    59.9    +      -       +      +
    278B  VAL*     3.1     2.8    +      -       -      +
    279B  VAL*     2.9    45.7    +      -       +      +
    329B  LEU      3.9     9.4    -      -       -      +
    330B  TYR*     4.1    12.8    -      -       +      -
    333B  LEU*     3.4    41.1    -      -       +      +
    334B  ASP*     4.3    21.8    -      -       +      -
    337B  PHE*     4.9     0.7    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 276 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
     94B  THR*     4.2     7.6    -      -       +      -
    149B  LEU*     5.9     0.2    -      -       +      -
    152B  MET*     3.9    42.2    -      -       +      -
    153B  SER*     4.2    14.4    -      -       -      +
    156B  ARG*     3.9    27.1    -      -       +      -
    246B  TYR*     3.0    20.9    -      -       +      +
    272B  ILE      3.1    14.2    +      -       -      +
    273B  THR      3.6     2.5    -      -       -      +
    275B  LEU*     1.3    77.2    -      -       +      +
    277B  LEU*     1.3    58.0    +      -       -      +
    279B  VAL*     3.2     6.4    +      -       -      +
    280B  VAL*     2.8    32.0    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 277 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    242B  ILE*     6.1     0.2    -      -       +      -
    246B  TYR*     3.1    49.1    +      -       +      -
    250B  ILE*     6.0     4.7    -      -       +      -
    273B  THR*     3.0    10.3    +      -       +      +
    274B  ARG*     3.5    11.0    -      -       -      +
    276B  VAL*     1.3    74.0    -      -       -      +
    278B  VAL*     1.3    62.6    +      -       +      +
    280B  VAL*     3.9     9.4    -      -       +      +
    281B  ALA*     3.1    28.4    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 278 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    274B  ARG*     2.9    29.1    +      -       +      +
    275B  LEU      3.6     6.3    -      -       -      +
    277B  LEU*     1.3    79.8    -      -       +      +
    279B  VAL*     1.3    63.9    +      -       -      +
    281B  ALA*     3.2     5.6    +      -       +      +
    282B  VAL*     3.0    31.4    +      -       +      +
    329B  LEU*     4.2    18.6    -      -       +      -
    333B  LEU*     3.7    28.5    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 279 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101B  LEU*     4.1    11.0    -      -       +      -
    149B  LEU*     3.7    24.9    -      -       +      -
    152B  MET*     5.4     4.5    -      -       +      -
    275B  LEU*     2.9    38.9    +      -       +      +
    276B  VAL*     3.7     6.7    -      -       -      +
    278B  VAL*     1.3    76.1    -      -       +      +
    280B  VAL*     1.3    62.0    +      -       -      +
    282B  VAL*     4.3     1.2    -      -       -      +
    283B  PHE*     3.2    22.6    +      -       +      +
    326B  ASN*     3.9    18.4    -      -       -      +
    329B  LEU*     4.2    22.9    -      -       +      -
    330B  TYR*     4.1    16.4    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 280 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    149B  LEU*     4.3    22.9    -      -       +      +
    153B  SER*     3.5    24.2    -      -       -      +
    242B  ILE*     3.7    31.4    -      -       +      -
    246B  TYR*     4.8     1.6    -      -       +      -
    276B  VAL*     2.8    26.0    +      -       +      +
    277B  LEU*     3.9    12.3    -      -       +      +
    279B  VAL*     1.3    74.1    -      -       -      +
    281B  ALA*     1.3    69.4    +      -       -      +
    283B  PHE*     3.1     8.0    +      -       -      +
    284B  VAL*     2.9    31.1    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 281 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    277B  LEU*     3.1    20.2    +      -       +      +
    278B  VAL*     3.2     7.4    +      -       -      +
    280B  VAL*     1.3    82.9    -      -       -      +
    282B  VAL*     1.3    66.9    +      -       +      +
    284B  VAL*     3.0     5.7    +      -       -      +
    285B  VAL*     2.9    30.8    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 282 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    278B  VAL*     3.0    22.9    +      -       +      +
    279B  VAL      4.3     2.9    -      -       -      +
    281B  ALA*     1.3    80.8    -      -       +      +
    283B  PHE*     1.3    63.6    +      -       -      +
    285B  VAL*     3.3     6.6    +      -       -      +
    286B  CYS*     2.8    45.3    +      -       -      -
    322B  ASN*     3.8     7.2    -      -       -      +
    325B  LEU*     3.7    26.7    -      -       +      -
    326B  ASN*     5.6     0.9    -      -       -      +
    329B  LEU*     4.1    20.2    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with PHE 283 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    101B  LEU*     5.2     3.4    -      -       +      -
    105B  ASP*     5.8     0.4    -      -       -      -
    142B  MET      5.0     1.1    -      -       -      -
    145B  SER*     3.7    29.6    -      -       -      -
    146B  ILE*     3.7    35.0    -      -       +      -
    149B  LEU*     3.3    25.8    -      -       +      -
    234B  ALA      5.8     0.9    -      -       -      -
    235B  PHE*     6.1     3.6    -      +       -      -
    279B  VAL*     3.2    14.4    +      -       +      +
    280B  VAL      3.1     9.5    +      -       -      +
    282B  VAL*     1.3    77.9    -      -       -      +
    284B  VAL*     1.3    66.5    +      -       +      +
    286B  CYS*     3.0     3.3    +      -       -      +
    287B  TRP*     2.8    67.0    +      +       +      +
    291B  HIS*     6.0     1.3    -      -       -      -
    322B  ASN*     3.1    30.2    +      -       -      +
    326B  ASN*     5.6     2.0    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 284 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    146B  ILE*     5.9     1.6    -      -       +      -
    235B  PHE*     5.0     7.2    -      -       +      -
    239B  VAL*     4.1    29.2    -      -       +      -
    242B  ILE*     5.9     3.6    -      -       +      -
    280B  VAL*     2.9    28.8    +      -       +      +
    281B  ALA*     3.5     8.5    -      -       -      +
    283B  PHE*     1.3    77.5    -      -       +      +
    285B  VAL*     1.3    72.8    +      -       +      +
    287B  TRP*     4.5     1.6    -      -       -      +
    288B  THR*     2.8    43.1    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 285 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    281B  ALA*     2.9    26.1    +      -       +      +
    282B  VAL*     3.6     9.4    -      -       -      +
    284B  VAL*     1.3    77.2    -      -       +      +
    286B  CYS*     1.3    60.8    +      -       -      +
    288B  THR*     4.2     3.1    -      -       -      -
    289B  PRO*     3.1    24.4    -      -       -      +
    318B  LEU*     5.1     5.0    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with CYS 286 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    282B  VAL*     2.8    42.0    +      -       -      +
    283B  PHE      3.6     2.9    -      -       -      +
    285B  VAL*     1.3    84.4    -      -       -      +
    287B  TRP*     1.3    60.0    +      -       +      +
    289B  PRO*     3.3     8.3    -      -       -      +
    290B  ILE*     4.7     1.2    -      -       -      +
    315B  CYS      4.3     3.6    -      -       -      +
    318B  LEU*     3.2    65.0    -      -       -      +
    319B  GLY      4.1     1.6    +      -       -      -
    321B  THR*     5.5     0.9    -      -       -      -
    322B  ASN*     3.7    17.9    -      -       +      -
    325B  LEU*     4.6     5.8    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with TRP 287 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    138B  ASP      5.2     0.2    -      -       -      -
    141B  ASN*     3.4    26.0    -      -       -      -
    142B  MET*     3.9    38.4    -      -       +      -
    145B  SER*     4.9     2.7    -      -       -      -
    235B  PHE*     4.4     3.6    -      -       +      -
    283B  PHE*     2.8    61.4    +      +       +      +
    284B  VAL*     4.4     2.0    -      -       -      +
    286B  CYS*     1.3    83.3    -      -       +      +
    288B  THR*     1.3    64.9    +      -       -      +
    289B  PRO*     3.4     1.6    -      -       -      -
    290B  ILE*     3.2    27.8    -      -       +      +
    291B  HIS*     3.0    43.4    +      -       +      -
    319B  GLY*     4.1    13.5    +      -       -      -
    322B  ASN*     4.2     9.5    -      -       -      +
    323B  SER*     5.7     2.0    +      -       -      -
   1300B  JDC      3.4    42.4    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with THR 288 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    235B  PHE*     3.1    28.6    -      -       +      -
    284B  VAL*     2.8    29.6    +      -       -      +
    285B  VAL*     4.2     3.1    -      -       -      -
    287B  TRP*     1.3    77.0    -      -       -      +
    289B  PRO*     1.3    74.1    -      -       +      +
    291B  HIS*     3.3     1.2    +      -       -      +
    292B  ILE*     3.0    42.5    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with PRO 289 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    285B  VAL      3.1    21.8    -      -       -      +
    286B  CYS      3.3    12.3    -      -       -      +
    287B  TRP      3.5     0.4    -      -       -      -
    288B  THR*     1.3    94.2    -      -       +      +
    290B  ILE*     1.3    56.4    +      -       -      +
    292B  ILE*     3.1    15.3    -      -       +      +
    293B  PHE*     2.9    30.5    +      -       -      +
    314B  PHE*     5.4     7.2    -      -       +      -
    315B  CYS*     3.7    25.7    -      -       +      -
    318B  LEU*     4.7     9.6    -      -       +      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 290 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    286B  CYS      4.7     0.9    +      -       -      +
    287B  TRP*     3.2    44.0    -      -       +      +
    289B  PRO*     1.3    79.6    -      -       -      +
    291B  HIS*     1.3    62.2    +      -       +      +
    293B  PHE*     3.6     3.5    -      -       +      +
    294B  ILE*     2.9    45.9    +      -       +      +
    312B  TYR*     4.5     8.1    -      -       +      -
    315B  CYS*     3.7    28.4    +      -       +      +
    316B  ILE*     3.5    27.8    -      -       +      -
    319B  GLY*     5.9     0.7    -      -       -      -
   1300B  JDC      3.7    30.3    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with HIS 291 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    142B  MET*     3.6    28.2    -      -       -      +
    230B  VAL*     4.5     4.3    -      -       +      -
    231B  PHE*     4.4    20.9    -      -       +      -
    234B  ALA*     3.7    27.5    +      -       +      -
    235B  PHE*     3.4    31.7    -      +       +      +
    283B  PHE*     6.0     1.4    -      -       -      -
    287B  TRP*     3.0    47.1    +      +       +      +
    288B  THR      3.7     2.9    -      -       -      +
    289B  PRO      3.3     0.8    -      -       -      -
    290B  ILE*     1.3    82.5    -      -       +      +
    292B  ILE*     1.3    64.6    +      -       +      +
    294B  ILE*     3.5     4.1    +      -       -      +
    295B  LEU*     3.1    23.5    +      -       -      +
   1300B  JDC      4.2    14.6    -      +       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 292 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    231B  PHE*     4.9    14.1    -      -       +      -
    235B  PHE*     5.7     3.6    -      -       +      -
    288B  THR*     3.0    29.9    +      -       +      +
    289B  PRO*     3.1    20.0    -      -       +      +
    291B  HIS*     1.3    75.3    -      -       +      +
    293B  PHE*     1.3    63.1    +      -       -      +
    295B  LEU*     3.2     7.9    +      -       -      +
    296B  VAL*     2.7    33.0    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with PHE 293 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    289B  PRO      2.9    20.3    +      -       -      +
    290B  ILE*     3.6     5.8    -      -       +      +
    291B  HIS      3.2     0.2    -      -       -      -
    292B  ILE*     1.3    77.9    -      -       +      +
    294B  ILE*     1.3    76.4    +      -       +      +
    296B  VAL*     3.0    17.6    +      -       -      +
    297B  GLU*     3.1    40.1    +      -       +      +
    308B  ALA*     4.2    15.9    -      -       +      -
    309B  LEU*     5.8     0.2    -      -       -      -
    311B  SER*     3.7    19.3    -      -       -      -
    312B  TYR*     3.7    47.8    -      +       +      -
    315B  CYS*     4.1    14.8    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ILE 294 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    227B  LYS*     3.4    33.1    -      -       +      +
    290B  ILE*     2.9    37.3    +      -       +      +
    291B  HIS      3.9     1.8    -      -       -      +
    293B  PHE*     1.3    83.1    -      -       +      +
    295B  LEU*     1.3    62.6    +      -       -      +
    297B  GLU*     3.2    21.3    -      -       -      +
    298B  ALA*     3.2    21.0    +      -       -      +
    312B  TYR*     4.5    14.1    -      -       +      -
   1300B  JDC      3.6    46.7    -      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 295 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    227B  LYS*     4.3     7.0    -      -       +      +
    228B  ILE*     4.1    38.4    -      -       +      +
    231B  PHE*     3.6    46.9    -      -       +      -
    291B  HIS      3.1    15.7    +      -       -      +
    292B  ILE*     3.6     5.4    -      -       +      +
    293B  PHE      3.1     0.8    -      -       -      -
    294B  ILE*     1.3    76.9    -      -       -      +
    296B  VAL*     1.3    65.8    +      -       -      +
    298B  ALA*     3.1    15.0    +      -       +      +
    299B  LEU*     3.2    32.3    +      -       +      +
----------------------------------------------------------
 Back to top of page

Residues in contact with VAL 296 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    292B  ILE      2.7    20.4    +      -       -      +
    293B  PHE*     3.0     6.0    +      -       +      +
    295B  LEU*     1.3    72.1    -      -       -      +
    297B  GLU*     1.3    63.2    +      -       -      +
    299B  LEU*     3.0    11.2    +      -       -      +
    300B  GLY*     2.9    20.4    +      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with GLU 297 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    227B  LYS*     3.2    21.6    +      -       -      +
    293B  PHE*     3.1    38.3    +      -       +      +
    294B  ILE*     3.2    24.5    -      -       -      +
    296B  VAL*     1.3    77.0    -      -       -      +
    298B  ALA*     1.3    66.2    +      -       -      +
    300B  GLY*     3.0    23.3    -      -       -      +
    312B  TYR*     5.7     1.3    -      -       -      -
----------------------------------------------------------
 Back to top of page

Residues in contact with ALA 298 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    223B  ASP*     5.0     3.4    -      -       -      +
    224B  LEU*     3.8    28.1    -      -       +      +
    227B  LYS*     3.7    26.0    -      -       +      +
    294B  ILE      3.2    15.7    +      -       -      +
    295B  LEU*     3.1    10.3    +      -       +      +
    296B  VAL      3.1     0.8    -      -       -      -
    297B  GLU*     1.3    83.8    -      -       -      +
    299B  LEU*     1.3    61.1    +      -       +      +
    300B  GLY      4.2     1.7    -      -       -      +
   1304B  PEG      4.3    12.3    -      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with LEU 299 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    224B  LEU*     3.4    29.6    -      -       +      -
    228B  ILE*     4.7     8.5    -      -       +      -
    295B  LEU*     3.3    29.8    -      -       +      +
    296B  VAL*     3.0     7.7    +      -       -      +
    298B  ALA*     1.3    76.3    -      -       -      +
    300B  GLY*     1.3    65.2    +      -       -      +
   1304B  PEG      3.2    26.9    +      -       -      +
----------------------------------------------------------
 Back to top of page

Residues in contact with GLY 300 (chain B). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    296B  VAL      2.9    12.6    +      -       -      -
    297B  GLU*     3.0    19.6    -      -       -      +
    298B  ALA      4.2     1.9    -      -       -      +
    299B  LEU*     1.3    81.1    -      -       -      +
   1304B  PEG      4.9     5.5    -      -       -      +
----------------------------------------------------------
 Back to top of page


A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il