Contacts of the helix formed by residues 780 - 818 (chain A) in PDB entry 4DSL
Residue contacts within the protein are
derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332). A
short description of the analytical approach
is given at the end of the page.
Note:
Non-standard 3 letter residue
codes indicate a heterogroup. To identify
and analyse, use LPC software
Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC - hydrophobic-hydrophilic contact (destabilizing contact)
+/- - indicates presence/absence of a specific contacts
* - indicates residues forming contacts by their side chain
(including CA atoms)
Residues in contact with ASN 780 (chain A).
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
778A SER* 3.2 14.0 + - - +
779A ARG* 1.3 78.0 - - - +
781A PHE* 1.3 60.4 + - - +
782A ASN* 3.5 13.0 + - - +
783A VAL* 3.3 35.5 + - + +
784A ARG* 3.1 27.9 + - - +
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Residues in contact with PHE 781 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
779A ARG 3.3 3.9 + - - +
780A ASN* 1.3 73.3 - - - +
782A ASN* 1.3 83.7 + - - +
784A ARG* 3.4 30.3 + - - +
785A SER* 3.0 48.4 + - - -
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Residues in contact with ASN 782 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
780A ASN* 3.5 10.6 + - - +
781A PHE* 1.3 99.0 - - - +
783A VAL* 1.3 57.9 + - + +
785A SER* 3.2 5.7 + - - -
786A PHE* 3.1 26.0 + - - +
789A ARG* 4.7 3.1 + - - -
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Residues in contact with VAL 783 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
775A ASP* 3.4 32.3 - - + +
778A SER* 3.5 18.8 - - - +
780A ASN* 3.3 25.6 + - + +
782A ASN* 1.3 76.8 - - + +
784A ARG* 1.3 66.8 + - - +
785A SER 3.0 1.9 + - - -
786A PHE* 3.4 6.4 + - - +
787A ALA* 3.2 16.8 + - - +
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Residues in contact with ARG 784 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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758A LYS* 4.5 6.5 - - - +
775A ASP 3.4 10.8 - - - +
776A ILE* 3.6 22.8 - - - +
777A THR* 5.1 2.4 + - - +
778A SER 3.3 26.7 + - - +
779A ARG* 4.0 14.8 + - - +
780A ASN 3.1 20.4 + - - +
781A PHE* 3.4 37.0 + - - +
783A VAL* 1.3 77.3 - - - +
785A SER* 1.3 57.9 + - - +
787A ALA* 3.5 4.0 + - - +
788A GLU* 3.0 46.2 + - + +
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Residues in contact with SER 785 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
781A PHE* 3.0 43.3 + - - -
782A ASN* 3.5 7.9 - - - -
783A VAL 3.0 0.4 - - - -
784A ARG* 1.3 76.7 + - - +
786A PHE* 1.3 64.9 + - - +
788A GLU* 3.0 28.0 + - - +
789A ARG* 3.0 36.2 + - - -
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Residues in contact with PHE 786 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
782A ASN 3.1 15.8 + - - +
783A VAL* 3.9 7.4 - - - +
784A ARG 3.4 0.2 - - - -
785A SER* 1.3 75.5 - - - +
787A ALA* 1.3 62.9 + - - +
789A ARG* 3.0 22.1 + - - +
790A MET* 3.0 37.5 + - + +
5C G 3.2 46.4 - - - -
6C A 3.6 17.7 - - - -
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Residues in contact with ALA 787 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
773A LEU* 3.8 10.7 - - + +
775A ASP* 2.9 44.2 - - + +
776A ILE* 3.3 18.2 - - + +
783A VAL 3.2 4.3 + - - +
784A ARG 3.5 4.5 - - - +
786A PHE* 1.3 79.0 - - - +
788A GLU* 1.3 57.5 + - - +
790A MET* 3.5 14.4 + - - +
791A ALA* 3.0 21.7 + - - +
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Residues in contact with GLU 788 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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754A VAL* 3.7 33.0 - - + +
758A LYS* 4.2 3.9 + - - +
776A ILE* 3.7 11.7 - - + -
784A ARG* 3.0 34.9 + - + +
785A SER* 3.0 32.1 + - - +
787A ALA* 1.3 73.9 - - - +
789A ARG* 1.3 66.3 - - + +
791A ALA* 3.0 13.9 + - - +
792A MET* 3.2 26.4 + - + +
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Residues in contact with ARG 789 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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714A TYR* 3.4 22.0 - - - +
715A GLY 3.4 21.2 + - - +
716A ILE* 4.4 9.9 - - - +
717A SER* 4.7 20.8 + - - +
782A ASN 4.7 2.6 + - - -
785A SER* 3.0 34.6 + - - +
786A PHE* 3.5 27.3 - - - +
788A GLU* 1.3 76.4 - - + +
790A MET* 1.3 52.6 + - - +
792A MET* 2.9 13.6 + - + +
793A ASN* 2.7 37.0 + - - +
5C G 2.8 35.9 + - - -
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Residues in contact with MET 790 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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763A VAL* 4.5 0.2 - - - +
771A ARG* 3.2 22.4 - - - +
773A LEU* 3.8 22.2 - - + -
786A PHE* 3.0 50.4 + - + +
787A ALA* 3.6 10.8 - - - +
789A ARG* 1.3 73.9 - - - +
791A ALA* 1.3 67.0 + - - +
792A MET 2.9 1.0 + - - -
793A ASN* 4.3 4.0 - - - +
794A THR* 3.0 36.4 + - - +
5C G 4.1 6.7 - - - +
6C A 3.5 24.9 - - - +
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Residues in contact with ALA 791 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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753A ILE* 2.9 26.5 - - - +
754A VAL* 3.9 17.0 - - + -
757A ALA* 4.0 16.8 - - + -
763A VAL* 3.7 5.6 - - + +
773A LEU* 3.7 19.2 - - + +
776A ILE* 4.3 2.0 - - + -
787A ALA 3.0 14.6 + - - +
788A GLU* 3.0 11.8 + - - +
790A MET* 1.3 75.2 - - - +
792A MET* 1.3 57.6 + - - +
795A PRO* 3.2 14.9 - - - +
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Residues in contact with MET 792 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
713A VAL 4.4 2.0 - - - +
715A GLY* 3.8 26.0 - - - +
749A TYR* 2.5 26.9 + - - -
750A MET* 3.3 54.3 - - + +
753A ILE* 3.8 12.3 - - + -
754A VAL* 4.1 15.5 - - + -
788A GLU* 3.4 30.1 - - + +
789A ARG* 2.9 7.5 + - + +
791A ALA* 1.3 77.3 - - - +
793A ASN* 1.3 64.6 + - - +
794A THR 3.3 1.0 + - - -
795A PRO* 3.4 0.5 - - - +
796A ILE* 3.3 9.4 - - - +
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Residues in contact with ASN 793 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
613A THR* 4.8 0.3 - - - +
658A GLU* 5.4 2.0 + - - -
713A VAL* 3.3 28.5 + - - +
714A TYR* 3.6 14.1 - - - -
789A ARG 2.7 19.4 + - - +
790A MET* 4.7 0.9 - - - -
792A MET* 1.3 75.0 - - - +
794A THR* 1.3 65.1 + - - +
795A PRO 3.7 0.2 - - - -
796A ILE* 3.3 5.8 + - - +
797A GLN* 3.0 37.7 + - - +
5C G 3.1 54.0 + - - +
6C A 4.5 2.3 - - - +
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Residues in contact with THR 794 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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613A THR* 4.3 18.6 - - + +
763A VAL* 3.9 19.5 - - + -
765A THR* 5.0 7.4 - - + -
769A ARG 5.9 0.9 - - - +
771A ARG* 2.8 47.5 + - + +
790A MET* 3.0 22.6 + - - +
793A ASN* 1.3 79.1 + - - +
795A PRO* 1.3 63.8 - - + +
796A ILE 2.8 10.7 + - - -
797A GLN 4.5 0.4 - - - +
798A GLY* 2.8 22.0 + - - -
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Residues in contact with PRO 795 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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665A ILE* 3.9 15.1 - - + +
749A TYR* 3.7 12.3 - - + +
753A ILE* 3.7 15.9 - - + -
763A VAL* 4.1 8.1 - - + -
764A THR 3.2 27.8 - - - +
765A THR* 4.2 6.7 - - + -
791A ALA 3.2 25.1 - - - +
792A MET 3.4 8.3 - - - +
794A THR* 1.3 91.8 - - + +
796A ILE* 1.3 55.0 + - - -
799A SER* 2.9 31.7 + - - -
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Residues in contact with ILE 796 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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658A GLU* 3.4 42.0 - - + +
661A VAL* 4.2 8.6 - - + +
662A LEU* 4.1 34.8 - - + -
665A ILE* 4.6 7.9 - - + -
713A VAL* 4.9 14.1 - - + +
749A TYR* 3.7 22.0 - - + +
792A MET 3.3 19.5 - - - +
793A ASN* 3.4 7.9 - - - +
794A THR 2.8 2.2 - - - -
795A PRO* 1.3 75.9 - - - +
797A GLN* 1.3 63.6 + - - +
798A GLY 2.8 5.6 + - - -
799A SER* 3.0 11.1 + - - -
800A ALA* 3.2 12.7 + - - +
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Residues in contact with GLN 797 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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613A THR* 2.9 30.5 + - + -
615A ARG* 3.5 39.6 + - - +
658A GLU* 4.4 11.2 + - - +
793A ASN* 3.0 31.1 + - - +
794A THR 4.3 1.3 - - - +
796A ILE* 1.3 72.9 - - - +
798A GLY* 1.3 59.3 + - - +
800A ALA* 3.5 6.8 - - - +
801A ALA* 3.3 22.9 + - - +
5C G 2.9 28.3 + - - +
6C A 2.6 36.9 + - - +
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Residues in contact with GLY 798 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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613A THR* 3.2 26.0 - - - +
765A THR* 3.5 10.7 - - - +
769A ARG* 4.5 0.2 + - - -
794A THR 2.8 14.7 + - - -
796A ILE 2.8 1.4 - - - -
797A GLN* 1.3 76.7 - - - +
799A SER* 1.3 60.2 + - - +
800A ALA 3.1 1.8 - - - -
801A ALA* 3.4 3.9 - - - +
802A ASP* 3.0 31.9 + - - +
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Residues in contact with SER 799 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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661A VAL* 3.7 22.4 - - - -
665A ILE* 4.7 3.6 - - - +
765A THR* 3.4 2.8 - - - +
766A LEU* 2.8 41.5 + - - +
795A PRO 2.9 22.9 + - - -
796A ILE 3.0 2.0 + - - -
798A GLY* 1.3 78.4 - - - +
800A ALA* 1.3 54.6 + - - +
802A ASP* 3.4 9.3 - - - +
803A ILE* 3.1 34.9 + - - +
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Residues in contact with ALA 800 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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615A ARG* 6.3 0.9 - - - +
657A ILE* 3.9 37.7 - - + +
658A GLU* 5.1 6.7 - - + -
661A VAL* 4.7 3.3 - - + +
796A ILE 3.2 10.3 + - - +
797A GLN* 3.5 12.1 - - - +
798A GLY 3.1 0.2 - - - -
799A SER* 1.3 73.8 - - - +
801A ALA* 1.3 55.2 + - - +
803A ILE* 2.9 8.9 + - - +
804A ILE* 2.8 35.7 + - - +
829A HIS 5.2 4.0 - - - +
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Residues in contact with ALA 801 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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614A GLY* 3.7 33.2 - - - +
615A ARG* 3.8 11.4 - - + +
797A GLN 3.3 11.5 + - - +
798A GLY* 3.4 11.7 - - - +
800A ALA* 1.3 70.8 - - - +
802A ASP* 1.3 65.8 + - - +
804A ILE* 3.4 9.5 - - - +
805A LYS* 3.0 33.4 + - - +
827A GLN* 5.8 1.3 - - - +
829A HIS 5.0 3.5 + - - -
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Residues in contact with ASP 802 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A LEU* 4.8 1.2 - - - +
765A THR* 2.8 15.8 + - - -
766A LEU* 3.5 3.6 + - + +
767A LEU* 2.7 59.8 + - + +
769A ARG* 3.1 35.9 + - - +
798A GLY 3.0 17.5 + - - +
799A SER* 3.4 10.5 - - - +
800A ALA 3.3 0.2 - - - -
801A ALA* 1.3 73.4 - - - +
803A ILE* 1.3 68.0 + - + +
805A LYS* 3.6 3.5 - - - +
806A LYS* 3.0 21.3 + - - +
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Residues in contact with ILE 803 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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654A TYR* 3.6 20.9 - - + +
657A ILE* 4.2 11.2 - - + -
661A VAL* 3.9 24.5 - - + -
766A LEU* 4.4 14.8 - - + -
767A LEU* 6.3 0.2 - - + -
799A SER 3.1 16.5 + - - +
800A ALA* 2.9 10.1 + - - +
802A ASP* 1.3 77.2 - - + +
804A ILE* 1.3 66.2 + - - +
806A LYS* 3.0 8.7 + - - +
807A ALA* 2.9 18.2 + - - +
855A ALA* 4.0 7.0 - - + +
856A VAL* 3.7 38.8 - - + -
858A LEU* 4.5 7.0 - - + -
862A LEU* 4.0 18.4 - - + -
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Residues in contact with ILE 804 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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654A TYR* 4.2 17.2 - - + -
800A ALA 2.8 18.6 + - - +
801A ALA* 3.4 16.8 - - - +
803A ILE* 1.3 73.7 - - - +
805A LYS* 1.3 58.9 + - + +
807A ALA* 3.0 9.4 + - + +
808A MET* 2.8 27.1 + - - +
827A GLN* 3.9 20.4 - - + +
829A HIS 3.6 28.0 - - - +
830A ASP* 3.7 15.9 - - - +
831A GLU 3.7 24.9 - - - +
832A LEU* 3.8 23.6 - - + -
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Residues in contact with LYS 805 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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399A TYR* 5.1 0.4 - - - -
477A LEU* 4.0 15.5 - - + -
478A GLU* 2.7 33.9 + - - +
481A LEU* 3.2 31.4 - - + +
608A GLN* 4.8 10.1 + - - +
614A GLY 3.2 27.3 + - - -
616A LEU* 5.4 7.3 - - + +
769A ARG* 3.2 22.8 - - - +
801A ALA* 3.0 26.9 + - - +
802A ASP 3.6 3.6 - - - +
804A ILE* 1.3 79.0 - - + +
806A LYS* 1.3 63.5 + - - +
808A MET* 3.0 23.7 + - - +
809A ILE* 3.2 18.7 + - + +
827A GLN* 5.3 5.2 - - - +
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Residues in contact with LYS 806 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
477A LEU* 4.5 18.5 - - + +
767A LEU* 5.0 8.7 - - + -
802A ASP 3.0 9.8 + - - +
803A ILE* 3.0 11.5 + - - +
805A LYS* 1.3 71.8 - - - +
807A ALA* 1.3 66.8 + - - +
808A MET 3.0 1.6 - - - -
809A ILE* 3.1 13.2 + - + +
810A ASP* 2.8 42.9 + - - +
854A GLN 5.1 1.2 + - - -
855A ALA* 2.8 33.5 + - + +
856A VAL* 4.9 6.2 - - + +
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Residues in contact with ALA 807 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
654A TYR* 3.6 24.9 - - + +
803A ILE 2.9 8.4 + - - +
804A ILE* 3.0 13.0 + - + +
806A LYS* 1.3 74.3 - - - +
808A MET* 1.3 57.0 + - - +
810A ASP* 3.8 4.5 - - - +
811A LEU* 2.8 33.2 + - - +
832A LEU* 4.6 4.9 - - + -
851A VAL* 3.9 2.7 - - - +
852A MET* 3.9 22.2 - - + -
855A ALA* 3.7 14.4 - - + +
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Residues in contact with MET 808 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
481A LEU* 4.0 12.3 - - + -
484A ILE* 4.1 13.2 - - + -
485A LEU* 4.0 15.0 - - + -
488A MET* 3.5 32.1 - - + -
616A LEU* 4.9 3.8 - - - -
804A ILE* 2.8 19.1 + - - +
805A LYS* 3.3 16.2 - - - +
806A LYS 3.0 0.6 - - - -
807A ALA* 1.3 77.6 - - - +
809A ILE* 1.3 64.9 + - - +
811A LEU* 3.1 4.3 + - - +
812A ASN* 2.9 27.0 + - - +
824A LEU* 4.6 11.1 - - + +
827A GLN* 3.9 34.8 - - + -
832A LEU* 3.7 22.2 - - + -
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Residues in contact with ILE 809 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
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476A GLU 4.0 16.8 - - - +
477A LEU* 4.0 28.9 - - + +
480A PRO* 4.4 16.4 - - + -
481A LEU* 4.6 7.2 - - + +
484A ILE* 3.8 19.7 - - + -
805A LYS 3.2 21.7 + - - +
806A LYS* 3.1 15.3 + - + +
808A MET* 1.3 73.5 - - - +
810A ASP* 1.3 70.2 + - - +
812A ASN* 3.5 1.6 + - - +
813A ALA* 3.0 25.5 + - + +
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Residues in contact with ASP 810 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
806A LYS* 2.8 42.5 + - - +
807A ALA 3.8 0.2 - - - +
809A ILE* 1.3 78.4 - - - +
811A LEU* 1.3 53.7 + - - +
813A ALA* 3.5 5.4 + - - +
814A ARG* 2.8 37.0 + - + +
851A VAL* 3.3 20.4 - - + +
854A GLN 4.9 1.2 - - - +
855A ALA* 3.7 23.7 - - - -
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Residues in contact with LEU 811 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
807A ALA 2.8 22.2 + - - +
808A MET* 3.9 2.9 - - - +
810A ASP* 1.3 73.1 - - - +
812A ASN* 1.3 56.8 + - - +
814A ARG* 4.2 3.8 - - + +
815A LEU* 2.7 55.1 + - + +
824A LEU* 4.1 19.3 - - + -
832A LEU* 4.4 9.0 - - + -
834A LEU* 3.8 27.8 - - + -
847A LEU* 4.6 4.7 - - + +
848A VAL* 4.1 33.0 - - + -
851A VAL* 3.6 26.4 - - + +
852A MET* 5.6 2.2 - - + -
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Residues in contact with ASN 812 (chain A).
Click here for Legend to table.
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Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
484A ILE* 3.5 34.3 - - + +
487A GLU* 3.8 19.7 + - - +
808A MET 2.9 16.4 + - - +
809A ILE 3.9 1.6 - - - +
811A LEU* 1.3 76.0 - - - +
813A ALA* 1.3 63.9 + - - +
815A LEU* 4.1 11.6 - - - +
816A LYS* 3.3 20.8 + - - +
824A LEU* 4.4 13.0 - - + +
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Residues in contact with ALA 813 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
809A ILE* 3.0 20.7 + - + +
810A ASP* 3.7 5.8 - - - +
812A ASN* 1.3 76.9 - - - +
814A ARG* 1.3 57.7 + - + +
816A LYS* 3.2 9.0 + - - +
817A GLU* 2.7 36.4 + - - +
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Residues in contact with ARG 814 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
810A ASP 2.8 22.1 + - - +
811A LEU* 3.8 3.4 - - + +
813A ALA* 1.3 71.1 - - + +
815A LEU* 1.3 59.6 + - - +
817A GLU* 3.9 29.9 + - - +
818A GLU* 2.8 51.7 + - - +
847A LEU* 3.3 33.3 - - + +
850A GLU* 4.8 11.1 + - - +
851A VAL* 4.1 22.2 - - + +
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Residues in contact with LEU 815 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
811A LEU* 2.7 51.2 + - + +
812A ASN* 4.1 10.1 - - - +
814A ARG* 1.3 70.6 - - - +
816A LYS* 1.3 57.1 + - - +
818A GLU* 3.9 2.6 - - - -
819A ARG 3.6 1.2 + - - -
820A LEU* 2.9 43.0 + - + +
822A ALA* 3.4 46.9 - - + +
823A HIS* 4.6 4.9 - - - -
824A LEU* 4.9 7.2 - - + +
834A LEU* 4.3 15.5 - - + -
844A LEU* 4.1 18.2 - - + -
847A LEU* 4.7 3.3 - - + +
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Residues in contact with LYS 816 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
812A ASN 3.3 11.9 + - - +
813A ALA* 3.2 10.5 + - - +
814A ARG 3.0 0.6 - - - -
815A LEU* 1.3 75.8 - - - +
817A GLU* 1.3 59.8 + - - +
818A GLU 3.0 0.9 - - - -
819A ARG* 2.4 54.2 + - - +
820A LEU 5.5 0.4 - - - -
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Residues in contact with GLU 817 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
813A ALA* 2.7 24.2 + - - +
814A ARG* 3.8 36.2 + - - +
816A LYS* 1.3 73.5 - - - +
818A GLU* 1.3 69.4 + - - +
819A ARG* 3.3 23.1 + - - +
----------------------------------------------------------
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Residues in contact with GLU 818 (chain A).
Click here for Legend to table.
----------------------------------------------------------
Specific contacts
---------------------------
Residue Dist Surf HB Arom Phob DC
----------------------------------------------------------
814A ARG* 2.8 37.8 + - - +
815A LEU 4.3 0.2 - - - +
816A LYS 2.8 2.0 + - - -
817A GLU* 1.3 88.3 - - - +
819A ARG* 1.3 71.2 + - - +
820A LEU* 3.2 26.4 + - + +
843A ARG* 3.0 36.8 + - - +
847A LEU* 4.1 12.6 - - + -
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A short description of the
analytical approach
The contact analysis used in this page
is based upon the approach
developed in:
Sobolev V., Wade R.C., Vriend G.
and Edelman M. PROTEINS (1996)
25, 120-129.
Contact legitimacy depends on the hydrophobic-hydrophilic
properties of the contacting atoms. In order to
define it, for each inter-atomic contact,
eight atom classes have been introduced:
I Hydrophilic - N and O that can donate and accept hydrogen bonds
(e.g., oxygen of hydroxyl group of Ser. or Thr)
II Acceptor - N or O that can only accept a hydrogen bond
III Donor - N that can only donate a hydrogen bond
IV Hydrophobic - Cl, Br, I and all C atoms that are not in
aromatic rings and do not have a covalent bond to
a N or O atom
V Aromatic - C in aromatic rings irrespective of any other
bonds formed by the atom
VI Neutral - C atoms that have a covalent bond to at least one
atom of class I or two or more atoms from class II
or III; atoms; S, F, P, and metal atoms in all cases
VII Neutral-donor - C atoms that have a covalent bond with only one
atom of class III
VIII Neutral-acceptor - C atoms that have a covalent bond with only
one atom of class II
For each pair of contacts the state of legitimacy
is shown below:
Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
Atomic class I II III IV V VI VII VIII
------------------------------------------------------------
I (Hydrophilic) + + + - + + + +
II (Acceptor) + - + - + + + -
III (Donor) + + - - + + - +
IV (Hydrophobic) - - - + + + + +
V (Aromatic) + + + + + + + +
VI (Neutral) + + + + + + + +
VII (Neutral-donor) + + - + + + - +
VIII (Neutral-acceptor) + - + + + + + -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically
assigned based on the atomic coordinates. However, in
three cases (see below) the automatic assignment
is currently ambiguous. In these
cases, the user is advised to manually analyse
the full list of contacts using
LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are
considered "aromatic" (Class V) if the ring is approximately
planar, and "hydrophobic" (Class IV) or "neutral" (Classes
VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
"hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
"carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).
Please E-mail any
questions and/or suggestions concerning this page to
Vladimir.Sobolev@weizmann.ac.il