Contacts of the helix formed by residues 579 - 609 (chain A) in PDB entry 4DTP


Residue contacts within the protein are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332). A short description of the analytical approach is given at the end of the page.
For CSU analysis of other PDB entry

Note:
Non-standard 3 letter residue codes indicate a heterogroup. To identify and analyse, use LPC software

Legend:
Dist - nearest distance (Å) between atoms of two residues
Surf - contact surface area (Å2) between two residues
HB   - hydrophilic-hydrophilic contact (hydrogen bond)
Arom - aromatic-aromatic contact
Phob - hydrophobic-hydrophobic contact
DC   - hydrophobic-hydrophilic contact (destabilizing contact)
+/-  - indicates presence/absence of a specific contacts
*    - indicates residues forming contacts  by their side chain
       (including CA atoms)
Residues in contact with ASP 579 (chain A).
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    427A  PRO*     5.6     2.6    -      -       +      +
    430A  ILE*     3.9     7.4    -      -       -      +
    570A  LEU*     2.9    14.2    +      -       -      +
    577A  TYR      3.3     8.6    +      -       -      +
    578A  TYR*     1.3    80.6    -      -       -      +
    580A  LEU*     1.3    58.7    +      -       -      +
    581A  ARG*     2.8    58.5    +      -       -      +
    582A  ASN*     3.0    20.3    +      -       +      +
    583A  ALA      2.9    22.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 580 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    389A  GLN*     3.7    33.7    -      -       +      +
    391A  TYR*     3.7    39.9    -      -       +      -
    571A  GLY*     4.1     5.8    -      -       -      +
    578A  TYR*     3.3    43.7    -      -       +      +
    579A  ASP*     1.3    70.7    +      -       -      +
    581A  ARG*     1.3    53.5    +      -       -      +
    583A  ALA*     3.7     4.3    -      -       +      -
    584A  THR*     2.7    41.7    +      -       +      +
----------------------------------------------------------
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Residues in contact with ARG 581 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    430A  ILE*     3.5    31.3    -      -       -      +
    433A  THR*     5.9     2.8    -      -       -      +
    459A  ASN*     3.0    24.1    +      -       -      +
    461A  MET*     3.7    31.6    -      -       +      +
    463A  TYR*     4.2     0.2    -      -       -      -
    579A  ASP*     2.8    32.5    +      -       -      +
    580A  LEU*     1.3    77.3    -      -       -      +
    582A  ASN*     1.3    61.2    +      -       -      +
    584A  THR*     4.1     3.4    -      -       -      -
    585A  ALA*     3.0    12.1    +      -       -      +
----------------------------------------------------------
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Residues in contact with ASN 582 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    425A  ILE*     3.7    16.4    -      -       +      +
    426A  SER*     3.5    28.0    +      -       -      +
    427A  PRO*     3.7    11.7    -      -       -      +
    430A  ILE*     3.9    14.1    -      -       -      +
    463A  TYR*     2.6    36.6    +      -       -      -
    570A  LEU*     4.2    17.4    -      -       +      +
    577A  TYR      5.3     0.2    +      -       -      -
    579A  ASP*     3.0    21.0    +      -       +      +
    581A  ARG*     1.3    77.3    -      -       -      +
    583A  ALA*     1.3    65.6    +      -       -      +
    585A  ALA*     3.3    10.4    +      -       -      +
    586A  ILE*     3.3    21.0    +      -       -      +
----------------------------------------------------------
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Residues in contact with ALA 583 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    391A  TYR*     4.0    18.2    -      -       +      +
    567A  ALA      4.7     3.5    -      -       -      +
    570A  LEU*     3.9    10.4    -      -       +      +
    571A  GLY*     3.9    29.8    -      -       -      +
    579A  ASP      2.9    14.5    +      -       -      +
    580A  LEU*     4.1     8.1    -      -       +      +
    582A  ASN*     1.3    75.1    -      -       -      +
    584A  THR*     1.3    61.1    +      -       -      +
    586A  ILE*     3.3    17.9    +      -       -      +
    587A  THR*     3.3    17.2    +      -       -      +
----------------------------------------------------------
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Residues in contact with THR 584 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    391A  TYR*     3.8    34.5    -      -       +      -
    392A  PRO*     4.1    13.9    -      -       +      -
    459A  ASN*     3.1    18.9    +      -       -      +
    580A  LEU*     2.7    33.2    +      -       +      +
    581A  ARG*     4.1     1.2    -      -       -      -
    583A  ALA*     1.3    68.1    -      -       -      +
    585A  ALA*     1.3    60.5    +      -       -      +
    586A  ILE      3.1     1.8    -      -       -      -
    587A  THR*     3.5     7.2    -      -       -      +
    588A  THR*     2.7    42.9    +      -       -      -
----------------------------------------------------------
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Residues in contact with ALA 585 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    425A  ILE*     4.0    11.1    -      -       +      +
    457A  SER*     2.7    31.4    +      -       -      +
    459A  ASN*     3.1    17.9    -      -       -      +
    463A  TYR*     3.3    20.2    -      -       +      +
    581A  ARG      3.0    22.2    +      -       -      +
    582A  ASN      3.3     5.6    +      -       -      +
    584A  THR*     1.3    75.8    -      -       -      +
    586A  ILE*     1.3    62.0    -      -       -      +
    589A  PHE*     3.2    13.9    +      -       -      +
----------------------------------------------------------
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Residues in contact with ILE 586 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    416A  TYR*     3.4    48.4    -      -       +      +
    419A  ILE*     3.6    13.4    -      -       +      +
    420A  ILE*     3.5    27.8    -      -       +      -
    425A  ILE*     3.7    17.7    -      -       +      -
    567A  ALA*     4.0    12.6    -      -       +      +
    570A  LEU*     3.7    22.0    -      -       +      -
    582A  ASN      3.5    15.0    -      -       -      +
    583A  ALA      3.3     8.2    +      -       -      +
    584A  THR      3.1     0.2    -      -       -      -
    585A  ALA*     1.3    76.8    -      -       -      +
    587A  THR*     1.3    66.7    +      -       +      +
    589A  PHE*     3.3     4.2    +      -       -      +
    590A  GLY*     3.0    18.7    +      -       -      -
----------------------------------------------------------
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Residues in contact with THR 587 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    391A  TYR*     4.4    10.5    -      -       +      -
    392A  PRO*     2.9    28.4    +      -       -      +
    393A  GLY*     3.6    19.5    -      -       -      +
    394A  ALA*     5.0     0.3    -      -       -      -
    416A  TYR*     3.7    31.8    +      -       +      +
    583A  ALA      3.3    10.9    +      -       -      +
    584A  THR*     3.5    14.4    +      -       -      -
    586A  ILE*     1.3    75.2    -      -       +      +
    588A  THR*     1.3    62.4    +      -       -      +
    590A  GLY*     3.2     2.3    +      -       -      -
    591A  GLN*     3.0    30.8    +      -       -      +
      6T    T      5.8     0.9    -      -       -      -
----------------------------------------------------------
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Residues in contact with THR 588 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    392A  PRO*     5.1     6.6    -      -       -      +
    439A  LEU*     3.8    23.4    -      -       +      +
    458A  PRO*     3.7     8.7    -      -       +      +
    459A  ASN*     3.7    34.7    -      -       +      +
    584A  THR*     2.7    27.8    +      -       -      -
    587A  THR*     1.3    77.6    +      -       -      +
    589A  PHE*     1.3    64.2    +      -       -      +
    591A  GLN*     3.3     9.5    +      -       +      +
    592A  MET*     3.1    17.3    +      -       -      +
----------------------------------------------------------
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Residues in contact with PHE 589 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    419A  ILE*     3.6    27.1    -      -       +      -
    422A  GLN*     3.6     9.6    -      -       -      -
    423A  VAL*     3.6    19.3    -      -       +      -
    456A  CYS      4.0     9.0    -      -       -      -
    457A  SER*     3.8     4.3    +      -       -      +
    458A  PRO*     3.9    22.9    -      -       +      -
    585A  ALA      3.2    21.0    +      -       -      +
    586A  ILE      3.6     3.8    -      -       -      +
    588A  THR*     1.3    77.4    -      -       -      +
    590A  GLY*     1.3    56.1    +      -       -      +
    592A  MET*     3.3    14.5    +      -       +      +
    593A  ALA*     2.9    26.3    +      -       +      +
    670A  MET*     3.5    31.0    -      -       +      -
    674A  MET*     4.1     2.0    -      -       +      -
    676A  ASN*     3.4    26.0    -      -       -      -
    681A  MET*     4.0    20.0    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLY 590 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    394A  ALA*     6.2     1.6    -      -       -      -
    395A  PHE      5.8     0.4    -      -       -      -
    412A  LEU*     6.1     0.2    -      -       -      +
    415A  LEU*     4.3    12.4    -      -       -      +
    416A  TYR*     4.8     4.5    -      -       -      -
    419A  ILE*     3.7    17.2    -      -       -      +
    586A  ILE      3.0    11.8    +      -       -      -
    587A  THR      3.6     4.7    -      -       -      -
    589A  PHE*     1.3    73.4    -      -       -      +
    591A  GLN*     1.3    63.4    +      -       -      +
    593A  ALA*     3.3     4.3    +      -       -      +
    594A  LEU*     3.1    25.1    +      -       -      +
    622A  THR      3.9     8.3    -      -       -      +
----------------------------------------------------------
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Residues in contact with GLN 591 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    392A  PRO*     4.9     8.5    -      -       -      +
    393A  GLY      2.9    25.6    +      -       -      +
    394A  ALA*     3.6    11.2    +      -       -      +
    395A  PHE*     3.6    34.2    -      -       -      +
    439A  LEU*     3.7    21.7    -      -       +      +
    587A  THR      3.0    19.7    +      -       -      +
    588A  THR*     3.3    10.5    +      -       -      +
    590A  GLY*     1.3    74.8    -      -       -      +
    592A  MET*     1.3    62.0    +      -       -      +
    594A  LEU*     3.9     2.1    -      -       -      +
    595A  GLN*     3.0    38.9    +      -       -      +
    622A  THR      5.5     0.2    -      -       -      -
      7T    A      5.5     1.4    +      -       -      -
----------------------------------------------------------
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Residues in contact with MET 592 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    439A  LEU*     4.1     8.8    -      -       +      +
    442A  TYR*     3.8    33.0    -      -       +      +
    443A  ILE*     4.2    18.0    -      -       +      +
    458A  PRO*     3.8    25.1    -      -       +      -
    588A  THR      3.1     9.9    +      -       -      +
    589A  PHE*     3.6    18.2    -      -       +      +
    591A  GLN*     1.3    78.6    -      -       -      +
    593A  ALA*     1.3    55.0    +      -       -      +
    595A  GLN*     3.4     0.7    +      -       -      +
    596A  TRP*     2.8    42.4    +      -       +      +
    670A  MET*     3.9    27.4    -      -       +      +
    673A  TYR*     5.3     0.2    -      -       -      -
    674A  MET*     3.6    36.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with ALA 593 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    412A  LEU*     4.8     6.7    -      -       +      -
    415A  LEU*     5.3     1.8    -      -       +      -
    589A  PHE*     2.9    22.9    +      -       +      +
    590A  GLY*     3.3     8.7    +      -       -      +
    592A  MET*     1.3    76.6    -      -       -      +
    594A  LEU*     1.3    63.4    +      -       -      +
    596A  TRP*     3.6     0.5    -      -       -      +
    597A  ILE*     3.0    26.2    +      -       -      +
    667A  PHE*     3.6    22.1    -      -       +      -
    670A  MET*     3.8    22.0    -      -       +      -
    681A  MET*     4.7     7.6    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 594 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    395A  PHE*     3.6    27.4    -      -       +      +
    397A  LYS*     6.2     0.2    -      -       +      -
    412A  LEU*     5.3     4.4    -      -       -      +
    590A  GLY      3.1    16.1    +      -       -      +
    591A  GLN*     3.9     5.2    -      -       -      +
    593A  ALA*     1.3    77.5    -      -       -      +
    595A  GLN*     1.3    58.4    +      -       +      +
    597A  ILE*     3.4     6.6    -      -       +      +
    598A  GLU*     2.9    26.4    +      -       +      +
    620A  GLY*     4.1     6.1    -      -       -      -
    621A  ASP      3.9     9.4    -      -       -      +
    622A  THR      3.4    39.3    -      -       -      +
    623A  ASP*     4.4     2.2    -      -       -      -
    624A  SER      3.2    29.2    -      -       -      +
    625A  ILE*     3.7    15.7    -      -       +      -
    683A  MET*     5.3     0.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLN 595 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    395A  PHE*     3.4    60.8    -      -       +      +
    439A  LEU*     4.2     2.8    -      -       -      +
    440A  HIS*     3.8    21.5    +      -       -      -
    443A  ILE*     3.6    39.1    -      -       +      +
    591A  GLN*     3.0    31.7    +      -       -      +
    594A  LEU*     1.3    74.8    -      -       +      +
    596A  TRP*     1.3    64.1    +      -       -      +
    598A  GLU*     3.5    17.5    +      -       -      +
    599A  ARG*     3.2    17.8    +      -       -      +
----------------------------------------------------------
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Residues in contact with TRP 596 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    442A  TYR      3.3    28.7    -      -       -      -
    443A  ILE*     3.5    19.9    -      -       -      +
    445A  ALA*     3.8    11.4    -      -       +      -
    592A  MET*     2.8    22.7    +      -       +      +
    593A  ALA      3.6     3.4    -      -       -      +
    595A  GLN*     1.3    76.9    -      -       -      +
    597A  ILE*     1.3    66.7    +      -       +      +
    599A  ARG*     3.2    24.1    +      -       -      +
    600A  LYS*     3.0    38.1    +      -       +      +
    666A  GLY      2.8    23.1    +      -       -      -
    667A  PHE*     4.6     2.2    -      +       -      -
    669A  GLU*     3.3    30.7    -      -       +      -
    670A  MET*     3.6    45.9    -      -       +      +
    673A  TYR*     3.6    26.5    -      +       -      -
----------------------------------------------------------
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Residues in contact with ILE 597 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    593A  ALA      3.0     9.1    +      -       -      +
    594A  LEU*     3.4    13.2    -      -       -      +
    596A  TRP*     1.3    78.4    -      -       +      +
    598A  GLU*     1.3    69.1    +      -       -      +
    600A  LYS*     3.9    19.7    -      -       +      -
    601A  VAL*     2.9    34.9    +      -       +      +
    625A  ILE*     4.3     9.2    -      -       +      -
    663A  ILE*     3.7    38.1    -      -       +      +
    666A  GLY*     4.3     0.4    -      -       -      -
    667A  PHE*     3.4    44.9    -      -       +      +
    683A  MET*     3.9    23.1    -      -       +      -
----------------------------------------------------------
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Residues in contact with GLU 598 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    395A  PHE*     5.1     3.6    -      -       -      -
    397A  LYS*     2.9    45.4    +      -       -      +
    594A  LEU*     2.9    18.8    +      -       +      +
    595A  GLN*     3.6    21.2    -      -       -      +
    596A  TRP      3.3     0.2    -      -       -      -
    597A  ILE*     1.3    77.2    -      -       -      +
    599A  ARG*     1.3    62.0    +      -       -      +
    601A  VAL*     3.9     1.4    -      -       -      +
    602A  ASN*     3.1    34.4    +      -       -      +
    617A  VAL*     3.8    31.5    -      -       +      +
    625A  ILE*     4.7     5.2    -      -       +      -
----------------------------------------------------------
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Residues in contact with ARG 599 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    443A  ILE*     2.9    30.1    +      -       +      +
    444A  ASN*     3.5    30.2    +      -       -      +
    445A  ALA*     4.0     8.9    -      -       -      +
    595A  GLN      3.2     9.0    +      -       -      +
    596A  TRP*     3.2    42.9    +      -       -      +
    598A  GLU*     1.3    80.4    -      -       -      +
    600A  LYS*     1.3    73.5    +      -       -      +
    602A  ASN*     3.4     7.5    +      -       -      +
    603A  GLU*     3.0    70.4    +      -       +      +
    669A  GLU*     4.9     0.6    +      -       -      -
----------------------------------------------------------
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Residues in contact with LYS 600 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    596A  TRP*     3.0    46.3    +      -       +      +
    597A  ILE*     3.3    17.0    +      -       +      +
    599A  ARG*     1.3    94.9    -      -       -      +
    601A  VAL*     1.3    58.0    +      -       +      +
    603A  GLU*     3.4    18.0    +      -       -      +
    604A  TYR*     2.9    31.1    +      -       -      +
    662A  ALA      5.5     3.4    -      -       -      +
    663A  ILE*     6.0     0.2    -      -       -      -
    666A  GLY*     4.1    17.4    -      -       -      -
    669A  GLU*     2.9    36.5    +      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 601 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    597A  ILE*     2.9    22.8    +      -       +      +
    598A  GLU      4.0     2.2    -      -       -      +
    600A  LYS*     1.3    73.3    -      -       +      +
    602A  ASN*     1.3    61.5    +      -       -      +
    604A  TYR*     3.8     5.1    -      -       -      +
    605A  LEU*     2.9    52.1    +      -       +      +
    617A  VAL*     3.8    21.1    -      -       +      -
    625A  ILE*     3.7    18.4    -      -       +      -
    627A  VAL*     4.1     5.8    -      -       +      -
    659A  MET*     4.0    11.9    -      -       +      -
    663A  ILE*     3.7    28.9    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 602 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    598A  GLU*     3.1    38.9    +      -       -      +
    599A  ARG*     3.8     6.5    -      -       -      +
    601A  VAL*     1.3    74.6    -      -       -      +
    603A  GLU*     1.3    64.1    +      -       +      +
    606A  ASN*     2.9    33.8    +      -       -      +
    614A  GLU      4.3     8.7    -      -       -      +
    615A  ALA*     4.6     6.1    -      -       -      +
    616A  PHE*     2.8    35.7    +      -       -      +
    617A  VAL*     3.1    15.4    +      -       -      +
----------------------------------------------------------
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Residues in contact with GLU 603 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    599A  ARG*     3.0    60.3    +      -       +      +
    600A  LYS*     3.6    18.6    +      -       -      +
    602A  ASN*     1.3    78.5    -      -       +      +
    604A  TYR*     1.3    62.5    +      -       -      +
    606A  ASN*     3.9     3.9    -      -       -      +
    607A  GLU*     3.1    24.6    +      -       -      +
----------------------------------------------------------
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Residues in contact with TYR 604 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    600A  LYS      2.9    17.6    +      -       -      +
    601A  VAL*     3.3     6.3    +      -       -      +
    603A  GLU*     1.3    76.9    -      -       -      +
    605A  LEU*     1.3    71.0    +      -       +      +
    607A  GLU*     3.2    18.9    +      -       -      +
    608A  VAL*     3.0    58.9    +      -       +      +
    654A  PHE*     5.1     1.1    -      +       -      -
    658A  ARG*     3.3    48.7    +      -       +      +
    659A  MET*     4.2    15.0    -      -       +      -
    662A  ALA*     3.6    27.1    -      -       +      -
    665A  ARG*     4.4    10.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with LEU 605 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    601A  VAL*     2.9    25.0    +      -       +      +
    604A  TYR*     1.3    88.1    -      -       +      +
    606A  ASN*     1.3    64.2    +      -       -      +
    608A  VAL*     3.8     3.8    -      -       +      -
    609A  CYS*     3.0    30.5    +      -       -      +
    616A  PHE*     3.6    32.3    -      -       +      -
    627A  VAL*     3.5    32.3    -      -       +      -
    632A  ILE*     3.9    11.9    -      -       +      -
    654A  PHE*     3.8    32.1    -      -       +      -
    659A  MET*     3.7    16.6    -      -       +      -
----------------------------------------------------------
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Residues in contact with ASN 606 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    602A  ASN*     2.9    28.2    +      -       -      +
    603A  GLU*     3.9     5.3    -      -       -      +
    605A  LEU*     1.3    75.5    -      -       -      +
    607A  GLU*     1.3    56.7    +      -       -      +
    609A  CYS      3.6     0.2    -      -       -      -
    610A  GLY*     3.0     8.3    +      -       -      -
    611A  THR*     2.8    62.3    +      -       -      +
    612A  GLU*     3.3     7.8    +      -       -      -
    613A  GLY*     3.7     9.4    -      -       -      +
    614A  GLU*     2.8    47.4    +      -       -      +
    616A  PHE*     3.7     7.3    -      -       -      -
----------------------------------------------------------
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Residues in contact with GLU 607 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    603A  GLU      3.1    15.5    +      -       -      +
    604A  TYR*     3.3    20.7    -      -       -      +
    606A  ASN*     1.3    77.0    -      -       -      +
    608A  VAL*     1.3    64.3    +      -       -      +
    610A  GLY*     3.1    17.7    +      -       -      -
    611A  THR      4.8     1.1    -      -       -      -
----------------------------------------------------------
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Residues in contact with VAL 608 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    604A  TYR*     3.0    55.9    +      -       +      +
    605A  LEU*     3.6    25.6    -      -       +      +
    607A  GLU*     1.3    81.6    -      -       +      +
    609A  CYS*     1.3    64.1    +      -       -      +
    610A  GLY      3.3     1.2    +      -       -      -
    635A  LYS*     4.5     5.4    +      -       -      +
    654A  PHE*     4.3    13.7    -      -       +      -
----------------------------------------------------------
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Residues in contact with CYS 609 (chain A). Click here for Legend to table.
----------------------------------------------------------
                                  Specific contacts
                               ---------------------------
     Residue       Dist    Surf   HB    Arom    Phob    DC
----------------------------------------------------------
    605A  LEU      3.0    22.0    +      -       -      +
    606A  ASN      4.2     1.1    -      -       -      +
    608A  VAL*     1.3    80.8    -      -       -      +
    610A  GLY*     1.3    60.0    +      -       -      +
    611A  THR*     3.2    17.2    +      -       +      +
    616A  PHE*     4.0    15.9    -      -       +      -
    631A  LYS*     4.6    10.5    -      -       +      -
    632A  ILE*     3.8    28.9    -      -       -      -
    635A  LYS*     2.7    44.0    +      -       +      +
    654A  PHE*     5.8     0.2    -      -       -      -
----------------------------------------------------------
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A short description of the analytical approach
The contact analysis used in this page is based upon the approach developed in: Sobolev V., Wade R.C., Vriend G. and Edelman M. PROTEINS (1996) 25, 120-129. Contact legitimacy depends on the hydrophobic-hydrophilic properties of the contacting atoms. In order to define it, for each inter-atomic contact, eight atom classes have been introduced:


   I  Hydrophilic      - N and O that can donate and accept hydrogen bonds
                         (e.g., oxygen of hydroxyl group of Ser. or Thr)
  II  Acceptor         - N or O that can only accept a hydrogen bond
 III  Donor            - N that can only donate a hydrogen bond
  IV  Hydrophobic      - Cl, Br, I and all C atoms that are not in
                         aromatic rings and do not have a covalent bond to
                         a N or O atom
   V  Aromatic         - C in aromatic rings irrespective of any other 
                         bonds formed by the atom
  VI  Neutral          - C atoms that have a covalent bond to at least one
                         atom of class I or two or more atoms from class II
                         or III; atoms; S, F, P, and metal atoms in all cases
 VII  Neutral-donor    - C atoms that have a covalent bond with only one
                         atom of class III
VIII  Neutral-acceptor - C atoms that have a covalent bond with only 
                         one atom of class II
For each pair of contacts the state of legitimacy is shown below:

Legend:
+, legitimate
-, illegitimate
------------------------------------------------------------
  Atomic class           I  II  III   IV   V   VI  VII  VIII
------------------------------------------------------------
   I  (Hydrophilic)      +   +    +    -   +   +    +    +
  II  (Acceptor)         +   -    +    -   +   +    +    -
 III  (Donor)            +   +    -    -   +   +    -    +
  IV  (Hydrophobic)      -   -    -    +   +   +    +    +
   V  (Aromatic)         +   +    +    +   +   +    +    +
  VI  (Neutral)          +   +    +    +   +   +    +    +
 VII  (Neutral-donor)    +   +    -    +   +   +    -    +
VIII  (Neutral-acceptor) +   -    +    +   +   +    +    -
------------------------------------------------------------
Warning!
Atom classes for heterogroups are automatically assigned based on the atomic coordinates. However, in three cases (see below) the automatic assignment is currently ambiguous. In these cases, the user is advised to manually analyse the full list of contacts using LPC software.
1. Carbon atoms belonging to a 4-, 5- or 6-member ring are 
   considered "aromatic" (Class V) if the ring is approximately
   planar, and "hydrophobic" (Class IV) or "neutral" (Classes
   VI, VII, VIII) if the ring is non-planar.
2. The oxygen atom of a carbonyl or hydroxy group is considered
   "hydroxy" (Class I) if the CO bond is longer than 1.29 Å, and
   "carbonyl" (Class II) if shorter.
3. All nitrogen atoms are considered "hydrophilic" (Class I).

Please E-mail any questions and/or suggestions concerning this page to Vladimir.Sobolev@weizmann.ac.il